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PMC:7067204 / 4909-7103 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
369 1969-1972 Gene denotes Bat Gene:570
370 1912-1915 Gene denotes Bat Gene:570
371 1855-1858 Gene denotes Bat Gene:570
372 1618-1621 Gene denotes Bat Gene:570
373 1550-1553 Gene denotes Bat Gene:570
374 1520-1523 Gene denotes bat Gene:570
375 1464-1467 Gene denotes Bat Gene:570
376 1435-1438 Gene denotes bat Gene:570
377 1380-1383 Gene denotes Bat Gene:570
378 1302-1305 Gene denotes Bat Gene:570
379 1224-1227 Gene denotes Bat Gene:570
380 1154-1157 Gene denotes Bat Gene:570
381 1080-1083 Gene denotes Bat Gene:570
382 1020-1023 Gene denotes Bat Gene:570
383 489-492 Gene denotes the Gene:25085
384 943-947 Gene denotes SARS Gene:6301
385 545-553 Species denotes SARS-CoV Tax:694009
386 564-588 Species denotes SARS-related coronavirus Tax:694009
387 622-630 Species denotes SARS-CoV Tax:694009
388 641-662 Species denotes SARS coronavirus BJ01 Tax:228407
389 677-703 Species denotes SARS coronavirus HKU-39849 Tax:228404
390 709-735 Species denotes SARS coronavirus HKU-39849 Tax:228404
391 755-760 Species denotes Human Tax:9606
392 761-769 Species denotes SARS-CoV Tax:694009
393 780-801 Species denotes SARS coronavirus GZ02 Tax:256753
394 816-821 Species denotes Human Tax:9606
395 822-825 Species denotes CoV Tax:11118
396 836-858 Species denotes Human coronavirus OC43 Tax:31631
397 906-934 Species denotes SARS coronavirus HC/SZ/61/03 Tax:260069
398 963-975 Species denotes Bat CoV HKU9 Tax:694006
399 983-1005 Species denotes Bat coronavirus HKU9-1 Tax:424367
400 1027-1030 Species denotes CoV Tax:11118
401 1042-1065 Species denotes Bat SARS CoV Rs672/2006 Tax:722424
402 1087-1090 Species denotes CoV Tax:11118
403 1105-1139 Species denotes Bat SARS-like coronavirus RsSHC014 Tax:1415851
404 1161-1164 Species denotes CoV Tax:11118
405 1177-1209 Species denotes Bat SARS-like coronavirus Rs3367 Tax:1415834
406 1231-1234 Species denotes CoV Tax:11118
407 1247-1272 Species denotes Bat SARS-like coronavirus Tax:1508227
408 1309-1312 Species denotes CoV Tax:11118
409 1325-1350 Species denotes Bat SARS-like coronavirus Tax:1508227
410 1387-1390 Species denotes CoV Tax:11118
411 1401-1426 Species denotes Bat SARS-like coronavirus Tax:1508227
412 1471-1474 Species denotes CoV Tax:11118
413 1486-1511 Species denotes Bat SARS-like coronavirus Tax:1508227
414 1554-1557 Species denotes CoV Tax:11118
415 1571-1603 Species denotes Coronavirus BtRs-BetaCoV/YN2018C Tax:2591236
416 1622-1625 Species denotes CoV Tax:11118
417 1639-1650 Species denotes Coronavirus Tax:11118
418 1656-1663 Species denotes BetaCoV Tax:694002
419 1699-1704 Species denotes Human Tax:9606
420 1705-1714 Species denotes 2019-nCoV Tax:2697049
421 1741-1746 Species denotes Human Tax:9606
422 1747-1750 Species denotes CoV Tax:11118
423 1761-1783 Species denotes Human coronavirus 229E Tax:11137
424 1798-1812 Species denotes Human CoV HKU1 Tax:290028
425 1818-1840 Species denotes Human coronavirus HKU1 Tax:290028
426 1859-1862 Species denotes CoV Tax:11118
427 1875-1897 Species denotes Bat coronavirus HKU4-1 Tax:424359
428 1916-1919 Species denotes CoV Tax:11118
429 1932-1954 Species denotes Bat coronavirus HKU5-1 Tax:424363
430 1973-1989 Species denotes SARS-related CoV Tax:694009
431 2003-2035 Species denotes Bat coronavirus BM48-31/BGR/2008 Tax:864596
432 2050-2055 Species denotes Human Tax:9606
433 2056-2064 Species denotes MERS-CoV Tax:1335626
434 2070-2114 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
435 770-774 Species denotes GZ02 Tax:256753
436 889-900 Species denotes HC/SZ/61/03 Tax:260069
437 1031-1041 Species denotes Rs672 2006 Tax:722424
438 1751-1755 Species denotes 229E Tax:11137
439 1863-1869 Species denotes HKU4-1 Tax:424359
440 1920-1926 Species denotes HKU5-1 Tax:424363
441 1678-1690 CellLine denotes MN975262 HKU CVCL:U508
443 420-433 Species denotes coronaviruses Tax:11118
447 2172-2175 Gene denotes the Gene:25085
448 2160-2162 Gene denotes to Gene:6999
449 2120-2135 Chemical denotes aOne nucleotide
461 386-388 Gene denotes as Gene:112935892
462 389-392 Gene denotes the Gene:25085
463 115-118 Gene denotes The Gene:25085
464 0-3 Gene denotes The Gene:25085
465 151-153 Gene denotes of Gene:6688
466 29-31 Gene denotes of Gene:6688
467 32-41 Species denotes 2019-nCoV Tax:2697049
468 197-202 Species denotes human Tax:9606
469 292-297 Species denotes human Tax:9606
470 365-378 Species denotes E coronavirus Tax:28293
471 94-102 CellLine denotes MN975262 CVCL:U508

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T19 13-19 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T20 143-150 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T21 319-323 Body_part denotes palm http://purl.org/sig/ont/fma/fma24920
T22 518-524 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T23 2125-2135 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T24 2155-2159 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T32 545-553 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 564-568 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 622-630 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 641-645 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 677-681 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 709-713 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 761-769 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 780-784 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 880-884 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 906-910 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 943-947 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 1046-1050 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 1109-1113 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 1181-1185 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 1251-1255 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 1329-1333 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 1405-1409 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 1490-1494 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 1973-1977 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T61 197-205 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human or
T62 292-297 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T63 299-303 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T64 347-351 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T65 539-544 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T66 616-621 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T67 755-760 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T68 816-821 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T69 836-841 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T70 949-953 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T71 1396-1400 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T72 1435-1438 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T73 1450-1454 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T74 1481-1485 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T75 1520-1523 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T76 1536-1540 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T77 1566-1570 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T78 1604-1608 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T79 1634-1638 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T80 1673-1677 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T81 1699-1704 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T82 1741-1746 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T83 1761-1766 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T84 1798-1803 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T85 1818-1823 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T86 2027-2030 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T87 2050-2055 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T88 2155-2159 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 1024-1026 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T13 1084-1086 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T14 1158-1160 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T15 1228-1230 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T16 1306-1308 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T17 1384-1386 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T18 1439-1441 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T19 1468-1470 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T20 1524-1526 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T21 2125-2135 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T39 0-93 Sentence denotes The complete genome sequence of 2019-nCoV HKU-SZ-005b was available at GenBank (accession no.
T40 94-114 Sentence denotes MN975262) (Table 1).
T41 115-253 Sentence denotes The representative complete genomes of other related βCoVs strains collected from human or mammals were included for comparative analysis.
T42 254-402 Sentence denotes These included strains collected from human, bats, and Himalayan palm civet between 2003 and 2018, with one 229E coronavirus strain as the outgroup.
T43 403-411 Sentence denotes Table 1.
T44 412-453 Sentence denotes List of coronaviruses used in this study.
T45 454-529 Sentence denotes Accession number Name displayed on the tree Name of full-length genome Year
T46 530-606 Sentence denotes AY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003
T47 607-667 Sentence denotes AY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003
T48 668-745 Sentence denotes AY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003
T49 746-806 Sentence denotes AY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003
T50 807-863 Sentence denotes AY391777 Human CoV OC43 2003 Human coronavirus OC43 2003
T51 864-953 Sentence denotes AY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018
T52 954-1010 Sentence denotes EF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006
T53 1011-1070 Sentence denotes FJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006
T54 1071-1144 Sentence denotes KC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013
T55 1145-1214 Sentence denotes KC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013
T56 1215-1292 Sentence denotes KY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016
T57 1293-1370 Sentence denotes KY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016
T58 1371-1454 Sentence denotes MG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018
T59 1455-1540 Sentence denotes MG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018
T60 1541-1608 Sentence denotes MK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018
T61 1609-1677 Sentence denotes MK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018
T62 1678-1731 Sentence denotes MN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020
T63 1732-1788 Sentence denotes NC002645 Human CoV 229E 2000 Human coronavirus 229E 2000
T64 1789-1845 Sentence denotes NC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004
T65 1846-1902 Sentence denotes NC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006
T66 1903-1959 Sentence denotes NC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006
T67 1960-2040 Sentence denotes NC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008
T68 2041-2119 Sentence denotes NC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012
T69 2120-2194 Sentence denotes aOne nucleotide was added within M gene to maintain the sequence in-frame.