PMC:7067204 / 4870-8880
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 369 | 2008-2011 | Gene | denotes | Bat | Gene:570 |
| 370 | 1951-1954 | Gene | denotes | Bat | Gene:570 |
| 371 | 1894-1897 | Gene | denotes | Bat | Gene:570 |
| 372 | 1657-1660 | Gene | denotes | Bat | Gene:570 |
| 373 | 1589-1592 | Gene | denotes | Bat | Gene:570 |
| 374 | 1559-1562 | Gene | denotes | bat | Gene:570 |
| 375 | 1503-1506 | Gene | denotes | Bat | Gene:570 |
| 376 | 1474-1477 | Gene | denotes | bat | Gene:570 |
| 377 | 1419-1422 | Gene | denotes | Bat | Gene:570 |
| 378 | 1341-1344 | Gene | denotes | Bat | Gene:570 |
| 379 | 1263-1266 | Gene | denotes | Bat | Gene:570 |
| 380 | 1193-1196 | Gene | denotes | Bat | Gene:570 |
| 381 | 1119-1122 | Gene | denotes | Bat | Gene:570 |
| 382 | 1059-1062 | Gene | denotes | Bat | Gene:570 |
| 383 | 528-531 | Gene | denotes | the | Gene:25085 |
| 384 | 982-986 | Gene | denotes | SARS | Gene:6301 |
| 385 | 584-592 | Species | denotes | SARS-CoV | Tax:694009 |
| 386 | 603-627 | Species | denotes | SARS-related coronavirus | Tax:694009 |
| 387 | 661-669 | Species | denotes | SARS-CoV | Tax:694009 |
| 388 | 680-701 | Species | denotes | SARS coronavirus BJ01 | Tax:228407 |
| 389 | 716-742 | Species | denotes | SARS coronavirus HKU-39849 | Tax:228404 |
| 390 | 748-774 | Species | denotes | SARS coronavirus HKU-39849 | Tax:228404 |
| 391 | 794-799 | Species | denotes | Human | Tax:9606 |
| 392 | 800-808 | Species | denotes | SARS-CoV | Tax:694009 |
| 393 | 819-840 | Species | denotes | SARS coronavirus GZ02 | Tax:256753 |
| 394 | 855-860 | Species | denotes | Human | Tax:9606 |
| 395 | 861-864 | Species | denotes | CoV | Tax:11118 |
| 396 | 875-897 | Species | denotes | Human coronavirus OC43 | Tax:31631 |
| 397 | 945-973 | Species | denotes | SARS coronavirus HC/SZ/61/03 | Tax:260069 |
| 398 | 1002-1014 | Species | denotes | Bat CoV HKU9 | Tax:694006 |
| 399 | 1022-1044 | Species | denotes | Bat coronavirus HKU9-1 | Tax:424367 |
| 400 | 1066-1069 | Species | denotes | CoV | Tax:11118 |
| 401 | 1081-1104 | Species | denotes | Bat SARS CoV Rs672/2006 | Tax:722424 |
| 402 | 1126-1129 | Species | denotes | CoV | Tax:11118 |
| 403 | 1144-1178 | Species | denotes | Bat SARS-like coronavirus RsSHC014 | Tax:1415851 |
| 404 | 1200-1203 | Species | denotes | CoV | Tax:11118 |
| 405 | 1216-1248 | Species | denotes | Bat SARS-like coronavirus Rs3367 | Tax:1415834 |
| 406 | 1270-1273 | Species | denotes | CoV | Tax:11118 |
| 407 | 1286-1311 | Species | denotes | Bat SARS-like coronavirus | Tax:1508227 |
| 408 | 1348-1351 | Species | denotes | CoV | Tax:11118 |
| 409 | 1364-1389 | Species | denotes | Bat SARS-like coronavirus | Tax:1508227 |
| 410 | 1426-1429 | Species | denotes | CoV | Tax:11118 |
| 411 | 1440-1465 | Species | denotes | Bat SARS-like coronavirus | Tax:1508227 |
| 412 | 1510-1513 | Species | denotes | CoV | Tax:11118 |
| 413 | 1525-1550 | Species | denotes | Bat SARS-like coronavirus | Tax:1508227 |
| 414 | 1593-1596 | Species | denotes | CoV | Tax:11118 |
| 415 | 1610-1642 | Species | denotes | Coronavirus BtRs-BetaCoV/YN2018C | Tax:2591236 |
| 416 | 1661-1664 | Species | denotes | CoV | Tax:11118 |
| 417 | 1678-1689 | Species | denotes | Coronavirus | Tax:11118 |
| 418 | 1695-1702 | Species | denotes | BetaCoV | Tax:694002 |
| 419 | 1738-1743 | Species | denotes | Human | Tax:9606 |
| 420 | 1744-1753 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 421 | 1780-1785 | Species | denotes | Human | Tax:9606 |
| 422 | 1786-1789 | Species | denotes | CoV | Tax:11118 |
| 423 | 1800-1822 | Species | denotes | Human coronavirus 229E | Tax:11137 |
| 424 | 1837-1851 | Species | denotes | Human CoV HKU1 | Tax:290028 |
| 425 | 1857-1879 | Species | denotes | Human coronavirus HKU1 | Tax:290028 |
| 426 | 1898-1901 | Species | denotes | CoV | Tax:11118 |
| 427 | 1914-1936 | Species | denotes | Bat coronavirus HKU4-1 | Tax:424359 |
| 428 | 1955-1958 | Species | denotes | CoV | Tax:11118 |
| 429 | 1971-1993 | Species | denotes | Bat coronavirus HKU5-1 | Tax:424363 |
| 430 | 2012-2028 | Species | denotes | SARS-related CoV | Tax:694009 |
| 431 | 2042-2074 | Species | denotes | Bat coronavirus BM48-31/BGR/2008 | Tax:864596 |
| 432 | 2089-2094 | Species | denotes | Human | Tax:9606 |
| 433 | 2095-2103 | Species | denotes | MERS-CoV | Tax:1335626 |
| 434 | 2109-2153 | Species | denotes | Middle East respiratory syndrome coronavirus | Tax:1335626 |
| 435 | 809-813 | Species | denotes | GZ02 | Tax:256753 |
| 436 | 928-939 | Species | denotes | HC/SZ/61/03 | Tax:260069 |
| 437 | 1070-1080 | Species | denotes | Rs672 2006 | Tax:722424 |
| 438 | 1790-1794 | Species | denotes | 229E | Tax:11137 |
| 439 | 1902-1908 | Species | denotes | HKU4-1 | Tax:424359 |
| 440 | 1959-1965 | Species | denotes | HKU5-1 | Tax:424363 |
| 441 | 1717-1729 | CellLine | denotes | MN975262 HKU | CVCL:U508 |
| 443 | 459-472 | Species | denotes | coronaviruses | Tax:11118 |
| 447 | 2211-2214 | Gene | denotes | the | Gene:25085 |
| 448 | 2199-2201 | Gene | denotes | to | Gene:6999 |
| 449 | 2159-2174 | Chemical | denotes | aOne nucleotide | |
| 461 | 425-427 | Gene | denotes | as | Gene:112935892 |
| 462 | 428-431 | Gene | denotes | the | Gene:25085 |
| 463 | 154-157 | Gene | denotes | The | Gene:25085 |
| 464 | 39-42 | Gene | denotes | The | Gene:25085 |
| 465 | 190-192 | Gene | denotes | of | Gene:6688 |
| 466 | 68-70 | Gene | denotes | of | Gene:6688 |
| 467 | 71-80 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 468 | 236-241 | Species | denotes | human | Tax:9606 |
| 469 | 331-336 | Species | denotes | human | Tax:9606 |
| 470 | 404-417 | Species | denotes | E coronavirus | Tax:28293 |
| 471 | 133-141 | CellLine | denotes | MN975262 | CVCL:U508 |
| 510 | 2605-2608 | Gene | denotes | The | Gene:25085 |
| 511 | 2837-2840 | Gene | denotes | the | Gene:25085 |
| 512 | 3678-3681 | Gene | denotes | the | Gene:25085 |
| 513 | 3963-3965 | Gene | denotes | as | Gene:112935892 |
| 514 | 2672-2674 | Gene | denotes | as | Gene:112935892 |
| 515 | 3987-3990 | Gene | denotes | the | Gene:25085 |
| 516 | 3918-3921 | Gene | denotes | The | Gene:25085 |
| 517 | 3742-3745 | Gene | denotes | the | Gene:25085 |
| 518 | 3582-3585 | Gene | denotes | the | Gene:25085 |
| 519 | 3502-3505 | Gene | denotes | the | Gene:25085 |
| 520 | 3255-3258 | Gene | denotes | the | Gene:25085 |
| 521 | 2850-2853 | Gene | denotes | the | Gene:25085 |
| 522 | 2795-2798 | Gene | denotes | the | Gene:25085 |
| 523 | 2748-2751 | Gene | denotes | The | Gene:25085 |
| 524 | 2725-2728 | Gene | denotes | the | Gene:25085 |
| 525 | 2684-2687 | Gene | denotes | the | Gene:25085 |
| 526 | 2657-2660 | Gene | denotes | the | Gene:25085 |
| 527 | 2586-2589 | Gene | denotes | the | Gene:25085 |
| 528 | 2531-2534 | Gene | denotes | the | Gene:25085 |
| 529 | 2489-2492 | Gene | denotes | the | Gene:25085 |
| 530 | 2446-2449 | Gene | denotes | The | Gene:25085 |
| 531 | 2319-2322 | Gene | denotes | the | Gene:25085 |
| 532 | 3977-3979 | Gene | denotes | to | Gene:6999 |
| 533 | 2716-2718 | Gene | denotes | to | Gene:6999 |
| 534 | 2624-2626 | Gene | denotes | to | Gene:6999 |
| 535 | 2583-2585 | Gene | denotes | to | Gene:6999 |
| 536 | 3163-3167 | Gene | denotes | orf8 | Gene:43740577 |
| 537 | 3949-3952 | Gene | denotes | UTR | Gene:2837 |
| 538 | 3537-3539 | Gene | denotes | of | Gene:6688 |
| 539 | 3270-3272 | Gene | denotes | of | Gene:6688 |
| 540 | 3160-3162 | Gene | denotes | of | Gene:6688 |
| 541 | 2861-2863 | Gene | denotes | of | Gene:6688 |
| 542 | 2847-2849 | Gene | denotes | of | Gene:6688 |
| 543 | 2681-2683 | Gene | denotes | of | Gene:6688 |
| 544 | 2461-2463 | Gene | denotes | of | Gene:6688 |
| 545 | 3928-3936 | Species | denotes | SARS-CoV | Tax:694009 |
| 546 | 3717-3721 | Gene | denotes | -UTR | Gene:2837 |
| 547 | 3706-3709 | Gene | denotes | UTR | Gene:2837 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T19 | 52-58 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T20 | 182-189 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T21 | 358-362 | Body_part | denotes | palm | http://purl.org/sig/ont/fma/fma24920 |
| T22 | 557-563 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T23 | 2164-2174 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T24 | 2194-2198 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T25 | 2235-2241 | Body_part | denotes | Genome | http://purl.org/sig/ont/fma/fma84116 |
| T26 | 2864-2874 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T27 | 3273-3280 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T28 | 3329-3334 | Body_part | denotes | helix | http://purl.org/sig/ont/fma/fma60992 |
| T29 | 3354-3364 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
| T30 | 3405-3422 | Body_part | denotes | neural networking | http://purl.org/sig/ont/fma/fma74616 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T9 | 2627-2632 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
| T10 | 3329-3334 | Body_part | denotes | helix | http://purl.obolibrary.org/obo/UBERON_0002488 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T32 | 584-592 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T33 | 603-607 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T34 | 661-669 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 680-684 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T36 | 716-720 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T37 | 748-752 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T38 | 800-808 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T39 | 819-823 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T40 | 919-923 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T41 | 945-949 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T42 | 982-986 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T43 | 1085-1089 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 1148-1152 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 1220-1224 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T46 | 1290-1294 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T47 | 1368-1372 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T48 | 1444-1448 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T49 | 1529-1533 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T50 | 2012-2016 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T51 | 3928-3936 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 236-244 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human or |
| T62 | 331-336 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T63 | 338-342 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
| T64 | 386-390 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T65 | 578-583 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T66 | 655-660 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T67 | 794-799 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T68 | 855-860 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T69 | 875-880 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T70 | 988-992 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T71 | 1435-1439 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T72 | 1474-1477 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T73 | 1489-1493 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T74 | 1520-1524 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T75 | 1559-1562 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
| T76 | 1575-1579 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T77 | 1605-1609 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T78 | 1643-1647 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T79 | 1673-1677 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T80 | 1712-1716 | http://purl.obolibrary.org/obo/CLO_0001185 | denotes | 2018 |
| T81 | 1738-1743 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T82 | 1780-1785 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T83 | 1800-1805 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T84 | 1837-1842 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T85 | 1857-1862 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T86 | 2066-2069 | http://purl.obolibrary.org/obo/PR_000001807 | denotes | BGR |
| T87 | 2089-2094 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Human |
| T88 | 2194-2198 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T89 | 2545-2549 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T90 | 3037-3042 | http://purl.obolibrary.org/obo/CLO_0009640 | denotes | X [15 |
| T91 | 3922-3927 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T12 | 1063-1065 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T13 | 1123-1125 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T14 | 1197-1199 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T15 | 1267-1269 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T16 | 1345-1347 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T17 | 1423-1425 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T18 | 1478-1480 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T19 | 1507-1509 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T20 | 1563-1565 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
| T21 | 2164-2174 | Chemical | denotes | nucleotide | http://purl.obolibrary.org/obo/CHEBI_36976 |
| T22 | 2368-2372 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T23 | 2864-2874 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T24 | 2864-2869 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T25 | 2870-2874 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T26 | 3032-3036 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
| T27 | 3273-3280 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T28 | 3311-3315 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
| T29 | 3323-3328 | Chemical | denotes | alpha | http://purl.obolibrary.org/obo/CHEBI_30216 |
| T30 | 3354-3364 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
| T31 | 3354-3359 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
| T32 | 3360-3364 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T37 | 0-21 | Sentence | denotes | Materials and methods |
| T38 | 23-38 | Sentence | denotes | Viral sequences |
| T39 | 39-132 | Sentence | denotes | The complete genome sequence of 2019-nCoV HKU-SZ-005b was available at GenBank (accession no. |
| T40 | 133-153 | Sentence | denotes | MN975262) (Table 1). |
| T41 | 154-292 | Sentence | denotes | The representative complete genomes of other related βCoVs strains collected from human or mammals were included for comparative analysis. |
| T42 | 293-441 | Sentence | denotes | These included strains collected from human, bats, and Himalayan palm civet between 2003 and 2018, with one 229E coronavirus strain as the outgroup. |
| T43 | 442-450 | Sentence | denotes | Table 1. |
| T44 | 451-492 | Sentence | denotes | List of coronaviruses used in this study. |
| T45 | 493-568 | Sentence | denotes | Accession number Name displayed on the tree Name of full-length genome Year |
| T46 | 569-645 | Sentence | denotes | AY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003 |
| T47 | 646-706 | Sentence | denotes | AY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003 |
| T48 | 707-784 | Sentence | denotes | AY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003 |
| T49 | 785-845 | Sentence | denotes | AY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003 |
| T50 | 846-902 | Sentence | denotes | AY391777 Human CoV OC43 2003 Human coronavirus OC43 2003 |
| T51 | 903-992 | Sentence | denotes | AY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018 |
| T52 | 993-1049 | Sentence | denotes | EF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006 |
| T53 | 1050-1109 | Sentence | denotes | FJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006 |
| T54 | 1110-1183 | Sentence | denotes | KC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013 |
| T55 | 1184-1253 | Sentence | denotes | KC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013 |
| T56 | 1254-1331 | Sentence | denotes | KY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016 |
| T57 | 1332-1409 | Sentence | denotes | KY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016 |
| T58 | 1410-1493 | Sentence | denotes | MG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018 |
| T59 | 1494-1579 | Sentence | denotes | MG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018 |
| T60 | 1580-1647 | Sentence | denotes | MK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018 |
| T61 | 1648-1716 | Sentence | denotes | MK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018 |
| T62 | 1717-1770 | Sentence | denotes | MN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020 |
| T63 | 1771-1827 | Sentence | denotes | NC002645 Human CoV 229E 2000 Human coronavirus 229E 2000 |
| T64 | 1828-1884 | Sentence | denotes | NC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004 |
| T65 | 1885-1941 | Sentence | denotes | NC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006 |
| T66 | 1942-1998 | Sentence | denotes | NC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006 |
| T67 | 1999-2079 | Sentence | denotes | NC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008 |
| T68 | 2080-2158 | Sentence | denotes | NC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012 |
| T69 | 2159-2233 | Sentence | denotes | aOne nucleotide was added within M gene to maintain the sequence in-frame. |
| T70 | 2235-2284 | Sentence | denotes | Genome characterization and phylogenetic analysis |
| T71 | 2285-2445 | Sentence | denotes | Phylogenetic tree construction by the neighbour joining method was performed using MEGA X software, with bootstrap values being calculated from 1000 trees [12]. |
| T72 | 2446-2604 | Sentence | denotes | The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) was shown next to the branches [13]. |
| T73 | 2605-2747 | Sentence | denotes | The tree was drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree. |
| T74 | 2748-2903 | Sentence | denotes | The evolutionary distances were computed using the Poisson correction method and were in the units of the number of amino acid substitutions per site [14]. |
| T75 | 2904-2991 | Sentence | denotes | All ambiguous positions were removed for each sequence pair (pairwise deletion option). |
| T76 | 2992-3044 | Sentence | denotes | Evolutionary analyses were conducted in MEGA X [15]. |
| T77 | 3045-3139 | Sentence | denotes | Multiple alignment was performed using CLUSTAL 2.1 and further visualized using BOXSHADE 3.21. |
| T78 | 3140-3250 | Sentence | denotes | Structural analysis of orf8 was performed using PSI-blast-based secondary structure PREDiction (PSIPRED) [16]. |
| T79 | 3251-3445 | Sentence | denotes | For the prediction of protein secondary structure including beta sheet, alpha helix, and coil, initial amino acid sequences were input and analysed using neural networking and its own algorithm. |
| T80 | 3446-3525 | Sentence | denotes | Predicted structures were visualized and highlighted on the BOXSHADE alignment. |
| T81 | 3526-3643 | Sentence | denotes | Prediction of transmembrane domains was performed using the TMHMM 2.0 server (http://www.cbs.dtu.dk/services/TMHMM/). |
| T82 | 3644-3917 | Sentence | denotes | Secondary structure prediction in the 5′-untranslated region (UTR) and 3′-UTR was performed using the RNAfold WebServer (http://rna.tbi.univie.ac.at/cgi-bin/RNAWebSuite/RNAfold.cgi) with minimum free energy (MFE) and partition function in Fold algorithms and basic options. |
| T83 | 3918-4010 | Sentence | denotes | The human SARS-CoV 5′- and 3′- UTR were used as references to adjust the prediction results. |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 31987001-3447015-27754481 | 2441-2443 | 3447015 | denotes | 12 |
| 31987001-28561359-27754482 | 2600-2602 | 28561359 | denotes | 13 |
| 31987001-29722887-27754483 | 3040-3042 | 29722887 | denotes | 15 |
| 31987001-31251384-27754484 | 3246-3248 | 31251384 | denotes | 16 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 31987001-3447015-27754481 | 2441-2443 | 3447015 | denotes | 12 |
| 31987001-28561359-27754482 | 2600-2602 | 28561359 | denotes | 13 |
| 31987001-29722887-27754483 | 3040-3042 | 29722887 | denotes | 15 |
| 31987001-31251384-27754484 | 3246-3248 | 31251384 | denotes | 16 |