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PMC:7067204 / 2914-4526 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
222 1085-1087 Gene denotes As Gene:112935892
223 629-631 Gene denotes as Gene:112935892
224 1316-1319 Gene denotes The Gene:25085
225 1255-1258 Gene denotes The Gene:25085
226 868-871 Gene denotes the Gene:25085
227 207-210 Gene denotes The Gene:25085
228 1429-1431 Gene denotes to Gene:6999
229 1140-1142 Gene denotes to Gene:6999
230 1335-1337 Gene denotes of Gene:6688
231 1273-1275 Gene denotes of Gene:6688
232 1208-1210 Gene denotes of Gene:6688
233 1088-1090 Gene denotes of Gene:6688
234 939-941 Gene denotes of Gene:6688
235 926-928 Gene denotes of Gene:6688
236 917-919 Gene denotes of Gene:6688
237 809-811 Gene denotes of Gene:6688
238 26-30 Species denotes CoVs Tax:11118
239 52-57 Species denotes human Tax:9606
240 77-86 Species denotes HCoV-229E Tax:11137
241 107-111 Species denotes βCoV Tax:694002
242 113-122 Species denotes HCoV-OC43 Tax:31631
243 136-145 Species denotes HCoV-HKU1 Tax:290028
244 159-167 Species denotes SARS-CoV Tax:694009
245 184-192 Species denotes MERS-CoV Tax:1335626
246 211-215 Species denotes βCoV Tax:694002
247 226-235 Species denotes HCoV-OC43 Tax:31631
248 240-249 Species denotes HCoV-HKU1 Tax:290028
249 441-449 Species denotes SARS-CoV Tax:694009
250 461-465 Species denotes βCoV Tax:694002
251 471-479 Species denotes MERS-CoV Tax:1335626
252 491-495 Species denotes βCoV Tax:694002
253 1043-1052 Species denotes novel CoV Tax:2697049
254 1075-1083 Species denotes patients Tax:9606
255 1111-1119 Species denotes patients Tax:9606
256 1168-1177 Species denotes novel CoV Tax:2697049
257 1344-1352 Species denotes patients Tax:9606
258 1522-1530 Species denotes patients Tax:9606
259 278-306 Disease denotes upper respiratory infections MESH:D012141
260 355-383 Disease denotes respiratory tract infections MESH:D012141
261 520-547 Disease denotes respiratory tract infection MESH:D012141
262 553-588 Disease denotes acute respiratory distress syndrome MESH:D012128
263 632-640 Disease denotes diarrhea MESH:D003967
264 642-653 Disease denotes lymphopenia MESH:D008231
265 700-731 Disease denotes multiorgan dysfunction syndrome MESH:D009102
266 793-802 Disease denotes mortality MESH:D003643
267 929-938 Disease denotes pneumonia MESH:D011014
268 1148-1157 Disease denotes infection MESH:D007239
269 1216-1225 Disease denotes pneumonia MESH:D011014
270 1362-1367 Disease denotes fever MESH:D005334
271 1369-1376 Disease denotes malaise MESH:D005221
272 1378-1387 Disease denotes dry cough MESH:D003371
273 1393-1400 Disease denotes dyspnea MESH:D004417
274 1509-1513 Disease denotes died MESH:D003643
275 1535-1544 Disease denotes pneumonia MESH:D011014

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T13 349-372 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T14 514-537 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T15 664-669 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T16 1571-1576 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 349-372 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T4 355-372 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T5 514-537 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T6 520-537 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 664-669 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T8 1571-1576 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T3 284-306 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T4 349-383 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T5 514-547 Phenotype denotes lower respiratory tract infection http://purl.obolibrary.org/obo/HP_0002783
T6 559-579 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T7 632-640 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T8 642-653 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T9 929-938 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 1216-1225 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1362-1367 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 1369-1376 Phenotype denotes malaise http://purl.obolibrary.org/obo/HP_0012378
T13 1378-1387 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T14 1393-1400 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T15 1535-1544 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T16 159-167 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 278-306 Disease denotes upper respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T18 355-386 Disease denotes respiratory tract infections in http://purl.obolibrary.org/obo/MONDO_0024355
T19 441-449 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 520-547 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T21 538-547 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 553-588 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T23 559-588 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T24 632-640 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T25 642-653 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T26 929-938 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 1148-1157 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 1216-1225 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T29 1535-1544 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T37 52-57 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T38 132-133 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 155-156 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 177-178 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T41 224-225 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T42 349-372 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T43 459-460 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T44 514-537 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T45 664-669 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T46 664-669 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T47 689-694 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T48 822-824 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T49 885-897 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T50 1021-1028 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T51 1041-1042 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 1408-1410 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T53 1432-1433 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 1519-1521 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T55 1571-1576 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-206 Sentence denotes Prior to December 2019, 6 CoVs were known to infect human, including 2 αCoV (HCoV-229E and HKU-NL63) and 4 βCoV (HCoV-OC43 [lineage A], HCoV-HKU1 [lineage A], SARS-CoV [lineage B] and MERS-CoV [lineage C]).
T26 207-427 Sentence denotes The βCoV lineage A HCoV-OC43 and HCoV-HKU1 usually cause self-limiting upper respiratory infections in immunocompetent hosts and occasionally lower respiratory tract infections in immunocompromised hosts and elderly [4].
T27 428-846 Sentence denotes In contrast, SARS-CoV (lineage B βCoV) and MERS-CoV (lineage C βCoV) may cause severe lower respiratory tract infection with acute respiratory distress syndrome and extrapulmonary manifestations, such as diarrhea, lymphopenia, deranged liver and renal function tests, and multiorgan dysfunction syndrome, among both immunocompetent and immunocompromised hosts with mortality rates of ∼10% and ∼35%, respectively [5,6].
T28 847-997 Sentence denotes On 31 December 2019, the World Health Organization (WHO) was informed of cases of pneumonia of unknown cause in Wuhan City, Hubei Province, China [7].
T29 998-1084 Sentence denotes Subsequent virological testing showed that a novel CoV was detected in these patients.
T30 1085-1254 Sentence denotes As of 16 January 2020, 43 patients have been diagnosed to have infection with this novel CoV, including two exported cases of mild pneumonia in Thailand and Japan [8,9].
T31 1255-1315 Sentence denotes The earliest date of symptom onset was 1 December 2019 [10].
T32 1316-1401 Sentence denotes The symptomatology of these patients included fever, malaise, dry cough, and dyspnea.
T33 1402-1514 Sentence denotes Among 41 patients admitted to a designated hospital in Wuhan, 13 (32%) required intensive care and 6 (15%) died.
T34 1515-1612 Sentence denotes All 41 patients had pneumonia with abnormal findings on chest computerized tomography scans [10].

2_test

Id Subject Object Predicate Lexical cue
31987001-15613317-27754478 424-425 15613317 denotes 4
31987001-12711465-27754479 841-842 12711465 denotes 5
31987001-27572168-27754480 843-844 27572168 denotes 6

MyTest

Id Subject Object Predicate Lexical cue
31987001-15613317-27754478 424-425 15613317 denotes 4
31987001-12711465-27754479 841-842 12711465 denotes 5
31987001-27572168-27754480 843-844 27572168 denotes 6