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PMC:7067204 / 21663-23420 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1257 1675-1680 Gene denotes Spike Gene:43740568
1258 1496-1499 Gene denotes the Gene:25085
1259 1644-1646 Gene denotes of Gene:6688
1305 1412-1415 Gene denotes the Gene:25085
1306 1086-1089 Gene denotes bat Gene:570
1307 1031-1034 Gene denotes bat Gene:570
1308 843-846 Gene denotes bat Gene:570
1309 454-457 Gene denotes bat Gene:570
1310 65-68 Gene denotes bat Gene:570
1311 1406-1408 Gene denotes as Gene:112935892
1312 1373-1376 Gene denotes the Gene:25085
1313 1199-1202 Gene denotes the Gene:25085
1314 858-861 Gene denotes the Gene:25085
1315 667-670 Gene denotes the Gene:25085
1316 450-453 Gene denotes the Gene:25085
1317 369-372 Gene denotes the Gene:25085
1318 278-281 Gene denotes the Gene:25085
1319 238-241 Gene denotes the Gene:25085
1320 197-200 Gene denotes The Gene:25085
1321 0-3 Gene denotes The Gene:25085
1322 664-666 Gene denotes to Gene:6999
1323 447-449 Gene denotes to Gene:6999
1324 1421-1423 Gene denotes of Gene:6688
1325 738-740 Gene denotes of Gene:6688
1326 263-265 Gene denotes of Gene:6688
1327 11-13 Gene denotes of Gene:6688
1328 14-23 Species denotes 2019-nCoV Tax:2697049
1329 69-85 Species denotes SARS-related-CoV Tax:694009
1330 131-139 Species denotes SARS-CoV Tax:694009
1331 171-179 Species denotes SARS-CoV Tax:694009
1332 373-382 Species denotes 2019-nCoV Tax:2697049
1333 458-475 Species denotes SARS-related CoVs Tax:694009
1334 508-522 Species denotes horseshoe bats Tax:49442
1335 632-649 Species denotes novel coronavirus Tax:2697049
1336 677-692 Species denotes Betacoronavirus Tax:694002
1337 749-760 Species denotes coronavirus Tax:11118
1338 763-789 Species denotes SARS-related coronaviruses Tax:694009
1339 913-937 Species denotes SARS-related coronavirus Tax:694009
1340 987-995 Species denotes SARS-CoV Tax:694009
1341 1006-1022 Species denotes SARS coronavirus Tax:694009
1342 1035-1061 Species denotes SARS-related coronaviruses Tax:694009
1343 1203-1212 Species denotes 2019-nCoV Tax:2697049
1344 1345-1354 Species denotes 2019-nCoV Tax:2697049
1345 1442-1450 Species denotes SARS-CoV Tax:694009
1346 833-842 Species denotes horseshoe Tax:49442
1347 151-159 Chemical denotes AY278488
1348 186-194 Chemical denotes AY274119
1349 1333-1341 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T103 4-10 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T104 40-50 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T105 242-252 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T106 284-300 Body_part denotes structural genes http://purl.org/sig/ont/fma/fma74402
T107 938-945 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T108 1623-1633 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T109 1681-1693 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T110 1708-1715 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T111 1730-1737 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T107 69-73 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T108 131-139 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 171-179 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T110 458-462 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T111 763-767 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 913-917 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T113 987-995 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 1006-1010 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 1035-1039 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T116 1442-1450 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T253 24-27 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T254 65-68 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T255 125-130 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T256 165-170 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T257 272-273 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T258 295-300 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T259 339-342 http://purl.obolibrary.org/obo/CLO_0051456 denotes A–E
T260 362-372 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes, the
T261 410-411 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T262 454-457 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T263 518-522 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T264 843-846 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T265 894-898 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T266 981-986 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T267 997-999 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T268 1031-1034 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T269 1086-1089 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T270 1121-1122 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T271 1161-1162 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T272 1245-1249 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T273 1321-1327 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T274 1648-1649 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T275 1672-1673 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T276 1721-1729 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T145 40-50 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T146 86-88 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T147 242-252 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T148 242-247 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T149 248-252 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T150 1545-1549 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T151 1623-1633 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T152 1623-1628 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T153 1629-1633 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T154 1658-1669 Chemical denotes polypeptide http://purl.obolibrary.org/obo/CHEBI_15841
T155 1681-1693 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T156 1708-1715 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T157 1730-1737 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T214 0-196 Sentence denotes The genome of 2019-nCoV has overall 89% nucleotide identity with bat SARS-related-CoV SL-CoVZXC21 (MG772934.1), and 82% with human SARS-CoV BJ01 2003 (AY278488) and human SARS-CoV Tor2 (AY274119).
T215 197-345 Sentence denotes The phylogenetic trees constructed using the amino acid sequences of orf1a/b and the 4 structural genes (S, E, M, and N) were shown (Figure 6(A–E)).
T216 346-418 Sentence denotes For all these 5 genes, the 2019-nCoV was clustered with lineage B βCoVs.
T217 419-621 Sentence denotes It was most closely related to the bat SARS-related CoVs ZXC21 and ZC45 found in Chinese horseshoe bats (Rhinolopus sinicus) collected from Zhoushan city, Zhejiang province, China between 2015 and 2017.
T218 622-762 Sentence denotes Thus this novel coronavirus should belong to the genus Betacoronavirus, subgenus Sabecovirus (previously lineage 2b of Group 2 coronavirus).
T219 763-876 Sentence denotes SARS-related coronaviruses have been found continuously especially in horseshoe bat species in the last 13 years.
T220 877-1098 Sentence denotes Between 2003 and 2018, 339 complete SARS-related coronavirus genomes have been sequenced, including 274 human SARS-CoV, 18 civet SARS coronavirus, and 47 bat SARS-related coronaviruses mainly from Rhinolophus bat species.
T221 1099-1169 Sentence denotes Together, they formed a distinct subclade among other lineage B βCoVs.
T222 1170-1250 Sentence denotes These results suggested that the 2019-nCoV might have also originated from bats.
T223 1251-1451 Sentence denotes But we cannot ascertain whether another intermediate or amplification animal host infected by 2019-nCoV could be found in the epidemiological market, just as in the case of Paguma civets for SARS-CoV.
T224 1452-1461 Sentence denotes Figure 6.
T225 1462-1757 Sentence denotes Phylogenetic tree construction by the neighbour joining method was performed using MEGA X software, with bootstrap values being calculated from 1000 trees using amino acid sequences of (A) orf1ab polypeptide; (B) Spike glycoprotein; (C) Envelope protein; (D) Membrane protein; (E) Nucleoprotein.