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PMC:7067204 / 21605-23420 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1253 32-41 Species denotes 2019-nCoV Tax:2697049
1257 1733-1738 Gene denotes Spike Gene:43740568
1258 1554-1557 Gene denotes the Gene:25085
1259 1702-1704 Gene denotes of Gene:6688
1305 1470-1473 Gene denotes the Gene:25085
1306 1144-1147 Gene denotes bat Gene:570
1307 1089-1092 Gene denotes bat Gene:570
1308 901-904 Gene denotes bat Gene:570
1309 512-515 Gene denotes bat Gene:570
1310 123-126 Gene denotes bat Gene:570
1311 1464-1466 Gene denotes as Gene:112935892
1312 1431-1434 Gene denotes the Gene:25085
1313 1257-1260 Gene denotes the Gene:25085
1314 916-919 Gene denotes the Gene:25085
1315 725-728 Gene denotes the Gene:25085
1316 508-511 Gene denotes the Gene:25085
1317 427-430 Gene denotes the Gene:25085
1318 336-339 Gene denotes the Gene:25085
1319 296-299 Gene denotes the Gene:25085
1320 255-258 Gene denotes The Gene:25085
1321 58-61 Gene denotes The Gene:25085
1322 722-724 Gene denotes to Gene:6999
1323 505-507 Gene denotes to Gene:6999
1324 1479-1481 Gene denotes of Gene:6688
1325 796-798 Gene denotes of Gene:6688
1326 321-323 Gene denotes of Gene:6688
1327 69-71 Gene denotes of Gene:6688
1328 72-81 Species denotes 2019-nCoV Tax:2697049
1329 127-143 Species denotes SARS-related-CoV Tax:694009
1330 189-197 Species denotes SARS-CoV Tax:694009
1331 229-237 Species denotes SARS-CoV Tax:694009
1332 431-440 Species denotes 2019-nCoV Tax:2697049
1333 516-533 Species denotes SARS-related CoVs Tax:694009
1334 566-580 Species denotes horseshoe bats Tax:49442
1335 690-707 Species denotes novel coronavirus Tax:2697049
1336 735-750 Species denotes Betacoronavirus Tax:694002
1337 807-818 Species denotes coronavirus Tax:11118
1338 821-847 Species denotes SARS-related coronaviruses Tax:694009
1339 971-995 Species denotes SARS-related coronavirus Tax:694009
1340 1045-1053 Species denotes SARS-CoV Tax:694009
1341 1064-1080 Species denotes SARS coronavirus Tax:694009
1342 1093-1119 Species denotes SARS-related coronaviruses Tax:694009
1343 1261-1270 Species denotes 2019-nCoV Tax:2697049
1344 1403-1412 Species denotes 2019-nCoV Tax:2697049
1345 1500-1508 Species denotes SARS-CoV Tax:694009
1346 891-900 Species denotes horseshoe Tax:49442
1347 209-217 Chemical denotes AY278488
1348 244-252 Chemical denotes AY274119
1349 1391-1399 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T103 62-68 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T104 98-108 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T105 300-310 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T106 342-358 Body_part denotes structural genes http://purl.org/sig/ont/fma/fma74402
T107 996-1003 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T108 1681-1691 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T109 1739-1751 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T110 1766-1773 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T111 1788-1795 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T107 127-131 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T108 189-197 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 229-237 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T110 516-520 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T111 821-825 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 971-975 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T113 1045-1053 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 1064-1068 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 1093-1097 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T116 1500-1508 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T253 82-85 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T254 123-126 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T255 183-188 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T256 223-228 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T257 330-331 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T258 353-358 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T259 397-400 http://purl.obolibrary.org/obo/CLO_0051456 denotes A–E
T260 420-430 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes, the
T261 468-469 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T262 512-515 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T263 576-580 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T264 901-904 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T265 952-956 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T266 1039-1044 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T267 1055-1057 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T268 1089-1092 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T269 1144-1147 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T270 1179-1180 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T271 1219-1220 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T272 1303-1307 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T273 1379-1385 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T274 1706-1707 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T275 1730-1731 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T276 1779-1787 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T145 98-108 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T146 144-146 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T147 300-310 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T148 300-305 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T149 306-310 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T150 1603-1607 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T151 1681-1691 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T152 1681-1686 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T153 1687-1691 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T154 1716-1727 Chemical denotes polypeptide http://purl.obolibrary.org/obo/CHEBI_15841
T155 1739-1751 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T156 1766-1773 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T157 1788-1795 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T213 0-57 Sentence denotes Phylogenetic relationship among 2019-nCoV and other βCoVs
T214 58-254 Sentence denotes The genome of 2019-nCoV has overall 89% nucleotide identity with bat SARS-related-CoV SL-CoVZXC21 (MG772934.1), and 82% with human SARS-CoV BJ01 2003 (AY278488) and human SARS-CoV Tor2 (AY274119).
T215 255-403 Sentence denotes The phylogenetic trees constructed using the amino acid sequences of orf1a/b and the 4 structural genes (S, E, M, and N) were shown (Figure 6(A–E)).
T216 404-476 Sentence denotes For all these 5 genes, the 2019-nCoV was clustered with lineage B βCoVs.
T217 477-679 Sentence denotes It was most closely related to the bat SARS-related CoVs ZXC21 and ZC45 found in Chinese horseshoe bats (Rhinolopus sinicus) collected from Zhoushan city, Zhejiang province, China between 2015 and 2017.
T218 680-820 Sentence denotes Thus this novel coronavirus should belong to the genus Betacoronavirus, subgenus Sabecovirus (previously lineage 2b of Group 2 coronavirus).
T219 821-934 Sentence denotes SARS-related coronaviruses have been found continuously especially in horseshoe bat species in the last 13 years.
T220 935-1156 Sentence denotes Between 2003 and 2018, 339 complete SARS-related coronavirus genomes have been sequenced, including 274 human SARS-CoV, 18 civet SARS coronavirus, and 47 bat SARS-related coronaviruses mainly from Rhinolophus bat species.
T221 1157-1227 Sentence denotes Together, they formed a distinct subclade among other lineage B βCoVs.
T222 1228-1308 Sentence denotes These results suggested that the 2019-nCoV might have also originated from bats.
T223 1309-1509 Sentence denotes But we cannot ascertain whether another intermediate or amplification animal host infected by 2019-nCoV could be found in the epidemiological market, just as in the case of Paguma civets for SARS-CoV.
T224 1510-1519 Sentence denotes Figure 6.
T225 1520-1815 Sentence denotes Phylogenetic tree construction by the neighbour joining method was performed using MEGA X software, with bootstrap values being calculated from 1000 trees using amino acid sequences of (A) orf1ab polypeptide; (B) Spike glycoprotein; (C) Envelope protein; (D) Membrane protein; (E) Nucleoprotein.