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PMC:7067204 / 20675-21603 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1043 223-226 Gene denotes bat Gene:570
1044 703-706 Gene denotes the Gene:25085
1045 685-688 Gene denotes the Gene:25085
1046 654-657 Gene denotes the Gene:25085
1047 635-638 Gene denotes the Gene:25085
1048 603-606 Gene denotes The Gene:25085
1049 472-475 Gene denotes the Gene:25085
1050 423-426 Gene denotes The Gene:25085
1051 373-376 Gene denotes the Gene:25085
1052 27-29 Gene denotes to Gene:6999
1053 756-760 Gene denotes Orf8 Gene:43740577
1054 88-92 Gene denotes orf8 Gene:43740577
1055 22-26 Gene denotes orf8 Gene:43740577
1056 753-755 Gene denotes of Gene:6688
1057 700-702 Gene denotes of Gene:6688
1058 114-116 Gene denotes of Gene:6688
1059 85-87 Gene denotes of Gene:6688
1060 19-21 Gene denotes of Gene:6688
1061 117-126 Species denotes 2019-nCoV Tax:2697049
1062 168-193 Species denotes bat SARS-like coronavirus Tax:1508227
1063 308-324 Species denotes SARS coronavirus Tax:694009
1064 203-206 Gene denotes bat Gene:570
1065 157-165 CellLine denotes MN975262 CVCL:U508

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T99 50-57 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 93-103 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T101 707-717 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T102 849-854 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 849-854 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T105 172-176 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T106 308-312 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T247 60-61 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T248 168-171 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T249 203-206 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T250 223-226 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T251 302-307 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T252 502-503 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T136 50-57 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T137 93-103 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T138 93-98 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T139 99-103 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T140 207-209 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T141 227-229 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T142 707-717 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T143 707-712 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T144 713-717 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T208 0-9 Sentence denotes Figure 5.
T209 10-422 Sentence denotes Analysis of orf8 to show novel putative protein. (A) Phylogenetic analysis of orf8 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21 and bat-SL-CoVZXC45 (accession number MG772934.1 and MG772933.1, respectively) and human SARS coronavirus (accession number AY274119) was performed using the neighbour-joining method with bootstrap 1000.
T210 423-602 Sentence denotes The evolutionary distances were calculated using the JTT matrix-based method. (B) Multiple alignment was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21, respectively.
T211 603-838 Sentence denotes The black background represents the identity while the grey background represents the similarity of the amino acid sequences. (C) Structural analysis of Orf8 was performed using PSI-blast-based secondary structure PREDiction (PSIPRED).
T212 839-928 Sentence denotes Predicted helix structure (h) and strand (s) were boxed with red and yellow respectively.