PMC:7067204 / 13199-16947
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
754 | 2212-2215 | Gene | denotes | bat | Gene:570 |
755 | 2192-2195 | Gene | denotes | bat | Gene:570 |
756 | 2508-2511 | Gene | denotes | the | Gene:25085 |
757 | 2490-2493 | Gene | denotes | the | Gene:25085 |
758 | 2465-2468 | Gene | denotes | the | Gene:25085 |
759 | 2446-2449 | Gene | denotes | the | Gene:25085 |
760 | 2420-2423 | Gene | denotes | The | Gene:25085 |
761 | 2073-2078 | Gene | denotes | Spike | Gene:43740568 |
762 | 2027-2032 | Gene | denotes | Spike | Gene:43740568 |
763 | 2505-2507 | Gene | denotes | of | Gene:6688 |
764 | 2103-2105 | Gene | denotes | of | Gene:6688 |
765 | 2070-2072 | Gene | denotes | of | Gene:6688 |
766 | 2024-2026 | Gene | denotes | of | Gene:6688 |
767 | 2003-2005 | Gene | denotes | of | Gene:6688 |
768 | 2106-2115 | Species | denotes | 2019-nCoV | Tax:2697049 |
769 | 2157-2182 | Species | denotes | bat SARS-like coronavirus | Tax:1508227 |
770 | 2297-2313 | Species | denotes | SARS coronavirus | Tax:694009 |
771 | 2146-2154 | CellLine | denotes | MN975262 | CVCL:U508 |
804 | 3242-3245 | Gene | denotes | the | Gene:25085 |
805 | 3023-3026 | Gene | denotes | Tor | Gene:6097 |
806 | 2880-2883 | Gene | denotes | bat | Gene:570 |
807 | 2856-2859 | Gene | denotes | bat | Gene:570 |
808 | 2835-2838 | Gene | denotes | bat | Gene:570 |
809 | 2818-2821 | Gene | denotes | bat | Gene:570 |
810 | 2801-2804 | Gene | denotes | bat | Gene:570 |
811 | 3718-3721 | Gene | denotes | the | Gene:25085 |
812 | 3423-3426 | Gene | denotes | the | Gene:25085 |
813 | 3357-3360 | Gene | denotes | the | Gene:25085 |
814 | 3310-3313 | Gene | denotes | the | Gene:25085 |
815 | 3210-3213 | Gene | denotes | The | Gene:25085 |
816 | 2682-2687 | Gene | denotes | Spike | Gene:43740568 |
817 | 2587-2592 | Gene | denotes | Spike | Gene:43740568 |
818 | 3632-3634 | Gene | denotes | of | Gene:6688 |
819 | 3579-3581 | Gene | denotes | of | Gene:6688 |
820 | 3368-3370 | Gene | denotes | of | Gene:6688 |
821 | 3307-3309 | Gene | denotes | of | Gene:6688 |
822 | 2712-2714 | Gene | denotes | of | Gene:6688 |
823 | 2679-2681 | Gene | denotes | of | Gene:6688 |
824 | 2581-2583 | Gene | denotes | of | Gene:6688 |
825 | 2560-2562 | Gene | denotes | of | Gene:6688 |
826 | 2715-2724 | Species | denotes | 2019-nCoV | Tax:2697049 |
827 | 2766-2791 | Species | denotes | bat SARS-like coronavirus | Tax:1508227 |
828 | 2842-2845 | Species | denotes | CoV | Tax:11118 |
829 | 2863-2866 | Species | denotes | CoV | Tax:11118 |
830 | 2887-2890 | Species | denotes | CoV | Tax:11118 |
831 | 2997-3018 | Species | denotes | SARS coronavirus GZ02 | Tax:256753 |
832 | 3094-3102 | Species | denotes | SARS-CoV | Tax:694009 |
833 | 3582-3591 | Species | denotes | 2019-nCoV | Tax:2697049 |
834 | 2891-2895 | Species | denotes | HKU3 | Tax:290028 |
835 | 2755-2763 | CellLine | denotes | MN975262 | CVCL:U508 |
894 | 58-61 | Gene | denotes | The | Gene:25085 |
895 | 932-934 | Gene | denotes | of | Gene:6688 |
896 | 1535-1538 | Gene | denotes | bat | Gene:570 |
897 | 1247-1250 | Gene | denotes | bat | Gene:570 |
898 | 750-753 | Gene | denotes | bat | Gene:570 |
899 | 427-430 | Gene | denotes | bat | Gene:570 |
900 | 1466-1468 | Gene | denotes | as | Gene:112935892 |
901 | 1409-1411 | Gene | denotes | as | Gene:112935892 |
902 | 1859-1862 | Gene | denotes | the | Gene:25085 |
903 | 1824-1827 | Gene | denotes | The | Gene:25085 |
904 | 1659-1662 | Gene | denotes | the | Gene:25085 |
905 | 1527-1530 | Gene | denotes | the | Gene:25085 |
906 | 1412-1415 | Gene | denotes | the | Gene:25085 |
907 | 1297-1300 | Gene | denotes | the | Gene:25085 |
908 | 1031-1034 | Gene | denotes | the | Gene:25085 |
909 | 1003-1006 | Gene | denotes | the | Gene:25085 |
910 | 954-957 | Gene | denotes | the | Gene:25085 |
911 | 905-908 | Gene | denotes | the | Gene:25085 |
912 | 837-840 | Gene | denotes | the | Gene:25085 |
913 | 803-806 | Gene | denotes | the | Gene:25085 |
914 | 742-745 | Gene | denotes | the | Gene:25085 |
915 | 676-679 | Gene | denotes | the | Gene:25085 |
916 | 506-509 | Gene | denotes | the | Gene:25085 |
917 | 419-422 | Gene | denotes | the | Gene:25085 |
918 | 333-336 | Gene | denotes | the | Gene:25085 |
919 | 180-183 | Gene | denotes | the | Gene:25085 |
920 | 1594-1596 | Gene | denotes | to | Gene:6999 |
921 | 1514-1516 | Gene | denotes | to | Gene:6999 |
922 | 731-733 | Gene | denotes | to | Gene:6999 |
923 | 1863-1868 | Gene | denotes | Spike | Gene:43740568 |
924 | 1301-1306 | Gene | denotes | spike | Gene:43740568 |
925 | 6-11 | Gene | denotes | Spike | Gene:43740568 |
926 | 754-758 | Gene | denotes | SARS | Gene:6301 |
927 | 1072-1074 | Gene | denotes | of | Gene:6688 |
928 | 902-904 | Gene | denotes | of | Gene:6688 |
929 | 739-741 | Gene | denotes | of | Gene:6688 |
930 | 691-693 | Gene | denotes | of | Gene:6688 |
931 | 416-418 | Gene | denotes | of | Gene:6688 |
932 | 348-350 | Gene | denotes | of | Gene:6688 |
933 | 35-37 | Gene | denotes | of | Gene:6688 |
934 | 351-360 | Species | denotes | 2019-nCoV | Tax:2697049 |
935 | 441-445 | Species | denotes | CoVs | Tax:11118 |
936 | 450-453 | Species | denotes | CoV | Tax:11118 |
937 | 480-488 | Species | denotes | SARS-CoV | Tax:694009 |
938 | 694-703 | Species | denotes | 2019-nCoV | Tax:2697049 |
939 | 764-768 | Species | denotes | CoVs | Tax:11118 |
940 | 779-787 | Species | denotes | SARS-CoV | Tax:694009 |
941 | 1206-1215 | Species | denotes | 2019-nCoV | Tax:2697049 |
942 | 1226-1234 | Species | denotes | SARS-CoV | Tax:694009 |
943 | 1257-1261 | Species | denotes | CoVs | Tax:11118 |
944 | 1370-1378 | Species | denotes | SARS-CoV | Tax:694009 |
945 | 1455-1460 | Species | denotes | human | Tax:9606 |
946 | 1539-1563 | Species | denotes | SARS-related coronavirus | Tax:694009 |
947 | 1597-1606 | Species | denotes | 2019-nCoV | Tax:2697049 |
948 | 1628-1632 | Species | denotes | rats | Tax:10116 |
949 | 431-435 | Gene | denotes | SARS | Gene:6301 |
950 | 1643-1655 | Disease | denotes | inflammation | MESH:D007249 |
951 | 1780-1782 | CellLine | denotes | E6 | CVCL:4582 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T65 | 12-24 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
T66 | 294-305 | Body_part | denotes | cytoplasmic | http://purl.org/sig/ont/fma/fma66835 |
T67 | 909-919 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T68 | 1663-1668 | Body_part | denotes | brain | http://purl.org/sig/ont/fma/fma50801 |
T69 | 1669-1675 | Body_part | denotes | tissue | http://purl.org/sig/ont/fma/fma9637 |
T70 | 1705-1709 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
T71 | 1712-1721 | Body_part | denotes | intestine | http://purl.org/sig/ont/fma/fma7199 |
T72 | 1783-1788 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
T73 | 2006-2013 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T74 | 2082-2092 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T75 | 2517-2527 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T76 | 2563-2570 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T77 | 2602-2606 | Body_part | denotes | head | http://purl.org/sig/ont/fma/fma7154 |
T78 | 2691-2701 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T79 | 3314-3324 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
T80 | 3635-3645 | Body_part | denotes | amino acid | http://purl.org/sig/ont/fma/fma82739 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T12 | 1663-1668 | Body_part | denotes | brain | http://purl.obolibrary.org/obo/UBERON_0000955 |
T13 | 1669-1675 | Body_part | denotes | tissue | http://purl.obolibrary.org/obo/UBERON_0000479 |
T14 | 1705-1709 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
T15 | 1712-1721 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
T16 | 2602-2606 | Body_part | denotes | head | http://purl.obolibrary.org/obo/UBERON_0000033 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T59 | 134-137 | Disease | denotes | NTD | http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075 |
T61 | 431-435 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T62 | 480-488 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T63 | 754-758 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T64 | 779-787 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T65 | 1226-1234 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T66 | 1370-1378 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T67 | 1539-1543 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T68 | 1643-1668 | Disease | denotes | inflammation in the brain | http://purl.obolibrary.org/obo/MONDO_0015144 |
T69 | 1643-1655 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
T70 | 2161-2165 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T71 | 2297-2301 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T72 | 2770-2774 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T73 | 2997-3001 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T74 | 3094-3102 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T128 | 38-40 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T129 | 45-47 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T130 | 45-47 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T131 | 62-64 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T132 | 82-83 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T133 | 84-90 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
T134 | 91-98 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
T135 | 184-186 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T136 | 184-186 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T137 | 221-228 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
T138 | 314-316 | http://purl.obolibrary.org/obo/PR_000005794 | denotes | CP |
T139 | 337-339 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T140 | 337-339 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T141 | 427-430 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T142 | 474-479 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T143 | 535-543 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptides |
T144 | 552-554 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T145 | 552-554 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T146 | 615-622 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
T147 | 626-632 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animal |
T148 | 664-666 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T149 | 680-682 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T150 | 750-753 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T151 | 773-778 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T152 | 798-799 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T153 | 892-893 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T154 | 1220-1225 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T155 | 1247-1250 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T156 | 1364-1369 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T157 | 1455-1460 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T158 | 1469-1470 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T159 | 1535-1538 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T160 | 1663-1668 | http://purl.obolibrary.org/obo/UBERON_0000955 | denotes | brain |
T161 | 1663-1668 | http://www.ebi.ac.uk/efo/EFO_0000302 | denotes | brain |
T162 | 1705-1709 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T163 | 1705-1709 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T164 | 1712-1721 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestine |
T165 | 1712-1721 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestine |
T166 | 1742-1749 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T167 | 1775-1788 | http://purl.obolibrary.org/obo/CLO_0051719 | denotes | Vero E6 cells |
T168 | 1869-1874 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
T169 | 2039-2041 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T170 | 2039-2041 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T171 | 2079-2081 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T172 | 2079-2081 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T173 | 2157-2160 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T174 | 2192-2195 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T175 | 2212-2215 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T176 | 2291-2296 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T177 | 2584-2585 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T178 | 2602-2606 | http://purl.obolibrary.org/obo/UBERON_0000033 | denotes | head |
T179 | 2602-2606 | http://www.ebi.ac.uk/efo/EFO_0000964 | denotes | head |
T180 | 2607-2609 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T181 | 2615-2616 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T182 | 2618-2620 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T183 | 2688-2690 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T184 | 2766-2769 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T185 | 2801-2804 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T186 | 2818-2821 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T187 | 2835-2838 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T188 | 2856-2859 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T189 | 2880-2883 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T190 | 2991-2996 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T191 | 3371-3377 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
T192 | 3378-3385 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
T193 | 3515-3516 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T67 | 12-24 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
T68 | 45-47 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T69 | 91-98 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T70 | 184-186 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T71 | 221-228 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T72 | 230-232 | Chemical | denotes | FP | http://purl.obolibrary.org/obo/CHEBI_74750 |
T73 | 285-287 | Chemical | denotes | TM | http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861 |
T75 | 314-316 | Chemical | denotes | CP | http://purl.obolibrary.org/obo/CHEBI_3380|http://purl.obolibrary.org/obo/CHEBI_73461 |
T77 | 337-339 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T78 | 447-449 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T79 | 525-534 | Chemical | denotes | antiviral | http://purl.obolibrary.org/obo/CHEBI_22587 |
T80 | 535-543 | Chemical | denotes | peptides | http://purl.obolibrary.org/obo/CHEBI_16670 |
T81 | 552-554 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T82 | 909-919 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T83 | 909-914 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T84 | 915-919 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T85 | 2006-2013 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T86 | 2039-2041 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T87 | 2079-2081 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T88 | 2082-2092 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T89 | 2082-2087 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T90 | 2088-2092 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T91 | 2196-2198 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T92 | 2216-2218 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T93 | 2517-2527 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T94 | 2517-2522 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T95 | 2523-2527 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T96 | 2563-2570 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T97 | 2691-2701 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T98 | 2691-2696 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T99 | 2697-2701 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T100 | 2805-2807 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T101 | 2822-2824 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T102 | 2839-2841 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T103 | 2860-2862 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T104 | 2884-2886 | Chemical | denotes | SL | http://purl.obolibrary.org/obo/CHEBI_74815 |
T105 | 3314-3324 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T106 | 3314-3319 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T107 | 3320-3324 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
T108 | 3378-3385 | Chemical | denotes | peptide | http://purl.obolibrary.org/obo/CHEBI_16670 |
T109 | 3635-3645 | Chemical | denotes | amino acid | http://purl.obolibrary.org/obo/CHEBI_33709 |
T110 | 3635-3640 | Chemical | denotes | amino | http://purl.obolibrary.org/obo/CHEBI_46882 |
T111 | 3641-3645 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T7 | 1014-1039 | http://purl.obolibrary.org/obo/GO_0051701 | denotes | interaction with the host |
T8 | 1185-1197 | http://purl.obolibrary.org/obo/GO_0009405 | denotes | pathogenesis |
T9 | 1643-1655 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T154 | 0-5 | Sentence | denotes | Spike |
T155 | 6-57 | Sentence | denotes | Spike glycoprotein comprised of S1 and S2 subunits. |
T156 | 58-318 | Sentence | denotes | The S1 subunit contains a signal peptide, followed by an N-terminal domain (NTD) and receptor-binding domain (RBD), while the S2 subunit contains conserved fusion peptide (FP), heptad repeat (HR) 1 and 2, transmembrane domain (TM), and cytoplasmic domain (CP). |
T157 | 319-500 | Sentence | denotes | We found that the S2 subunit of 2019-nCoV is highly conserved and shares 99% identity with those of the two bat SARS-like CoVs (SL-CoV ZXC21 and ZC45) and human SARS-CoV (Figure 2). |
T158 | 501-668 | Sentence | denotes | Thus the broad spectrum antiviral peptides against S2 would be an important preventive and treatment modality for testing in animal models before clinical trials [18]. |
T159 | 669-896 | Sentence | denotes | Though the S1 subunit of 2019-nCoV shares around 70% identity to that of the two bat SARS-like CoVs and human SARS-CoV (Figure 3(A)), the core domain of RBD (excluding the external subdomain) are highly conserved (Figure 3(B)). |
T160 | 897-1049 | Sentence | denotes | Most of the amino acid differences of RBD are located in the external subdomain, which is responsible for the direct interaction with the host receptor. |
T161 | 1050-1198 | Sentence | denotes | Further investigation of this soluble variable external subdomain region will reveal its receptor usage, interspecies transmission and pathogenesis. |
T162 | 1199-1379 | Sentence | denotes | Unlike 2019-nCoV and human SARS-CoV, most known bat SARSr-CoVs have two stretches of deletions in the spike receptor binding domain (RBD) when compared with that of human SARS-CoV. |
T163 | 1380-1495 | Sentence | denotes | But some Yunnan strains such as the WIV1 had no such deletions and can use human ACE2 as a cellular entry receptor. |
T164 | 1496-1722 | Sentence | denotes | It is interesting to note that the two bat SARS-related coronavirus ZXC21 and ZC45, being closest to 2019-nCoV, can infect suckling rats and cause inflammation in the brain tissue, and pathological changes in lung & intestine. |
T165 | 1723-1823 | Sentence | denotes | However, these two viruses could not be isolated in Vero E6 cells and were not investigated further. |
T166 | 1824-1981 | Sentence | denotes | The two retained deletion sites in the Spike genes of ZXC21 and ZC45 may lessen their likelihood of jumping species barriers imposed by receptor specificity. |
T167 | 1982-1991 | Sentence | denotes | Figure 2. |
T168 | 1992-2050 | Sentence | denotes | Comparison of protein sequences of Spike stalk S2 subunit. |
T169 | 2051-2419 | Sentence | denotes | Multiple alignment of Spike S2 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21 and bat-SL-CoVZXC45 (accession number MG772934.1 and MG772933.1, respectively) and human SARS coronavirus (accession number NC004718) was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21 respectively. |
T170 | 2420-2538 | Sentence | denotes | The black boxes represent the identity while the grey boxes represent the similarity of the four amino acid sequences. |
T171 | 2539-2548 | Sentence | denotes | Figure 3. |
T172 | 2549-2586 | Sentence | denotes | Comparison of protein sequences of A. |
T173 | 2587-2617 | Sentence | denotes | Spike globular head S1, and B. |
T174 | 2618-2659 | Sentence | denotes | S1 receptor-binding domain (RBD) subunit. |
T175 | 2660-3209 | Sentence | denotes | Multiple alignment of Spike S1 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21, bat-SL-CoVZXC45, bat-SL-CoV-YNLF_31C, bat-SL-CoV-YNLF_34C and bat SL-CoV HKU3-1 (accession number MG772934.1 and MG772933.1, KP886808, KP886809 and DQ022305, respectively), human SARS coronavirus GZ02 and Tor2 (accession number AY390556 and AY274119, respectively) and Paguma SARS-CoV (accession number AY515512) was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21, respectively. |
T176 | 3210-3335 | Sentence | denotes | The black background represents the identity while the grey background represents the similarity of the amino acid sequences. |
T177 | 3336-3480 | Sentence | denotes | Orange box indicates the region of signal peptide, while green and blue boxes indicate the core domain and receptor binding domain respectively. |
T178 | 3481-3543 | Sentence | denotes | Sequences of RBD, highlighted in (A) were used for comparison. |
T179 | 3544-3696 | Sentence | denotes | External subdomain variable region of 2019-nCoV HKU-SZ-005b was predicted by comparison of amino acid similarity and published structural analysis [17]. |
T180 | 3697-3748 | Sentence | denotes | Purple box indicates the external subdomain region. |
2_test
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
31987001-30989115-27754485 | 664-666 | 30989115 | denotes | 18 |
31987001-25211075-27754486 | 3692-3694 | 25211075 | denotes | 17 |
MyTest
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
31987001-30989115-27754485 | 664-666 | 30989115 | denotes | 18 |
31987001-25211075-27754486 | 3692-3694 | 25211075 | denotes | 17 |