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PMC:7067204 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
6 28-31 Gene denotes the Gene:25085
7 25-27 Gene denotes of Gene:6688
8 43-48 Species denotes human Tax:9606
9 60-71 Species denotes coronavirus Tax:11118
10 88-95 Species denotes patient Tax:9606
11 110-119 Disease denotes pneumonia MESH:D011014
58 877-880 Gene denotes bat Gene:570
59 691-694 Gene denotes bat Gene:570
60 388-390 Gene denotes as Gene:112935892
61 1606-1609 Gene denotes the Gene:25085
62 1573-1576 Gene denotes the Gene:25085
63 1531-1534 Gene denotes the Gene:25085
64 1442-1445 Gene denotes the Gene:25085
65 1345-1348 Gene denotes the Gene:25085
66 1287-1290 Gene denotes the Gene:25085
67 927-930 Gene denotes the Gene:25085
68 873-876 Gene denotes the Gene:25085
69 751-754 Gene denotes The Gene:25085
70 634-637 Gene denotes the Gene:25085
71 443-446 Gene denotes the Gene:25085
72 281-283 Gene denotes to Gene:6999
73 953-958 Gene denotes Spike Gene:43740568
74 792-797 Gene denotes Spike Gene:43740568
75 1309-1313 Gene denotes SARS Gene:6301
76 695-699 Gene denotes SARS Gene:6301
77 1158-1162 Gene denotes orf8 Gene:43740577
78 1617-1619 Gene denotes of Gene:6688
79 1467-1469 Gene denotes of Gene:6688
80 985-987 Gene denotes of Gene:6688
81 950-952 Gene denotes of Gene:6688
82 870-872 Gene denotes of Gene:6688
83 774-776 Gene denotes of Gene:6688
84 732-734 Gene denotes of Gene:6688
85 645-647 Gene denotes of Gene:6688
86 320-322 Gene denotes of Gene:6688
87 235-237 Gene denotes of Gene:6688
88 352-369 Species denotes novel coronavirus Tax:2697049
89 391-413 Species denotes 2019 novel coronavirus Tax:2697049
90 415-424 Species denotes 2019-nCoV Tax:2697049
91 536-543 Species denotes patient Tax:9606
92 604-615 Species denotes coronavirus Tax:11118
93 648-657 Species denotes 2019-nCoV Tax:2697049
94 741-749 Species denotes SARS-CoV Tax:694009
95 898-916 Species denotes SARS coronaviruses Tax:694009
96 988-997 Species denotes 2019-nCoV Tax:2697049
97 1045-1071 Species denotes SARS-related coronaviruses Tax:694009
98 1318-1323 Species denotes camel Tax:9838
99 1366-1375 Species denotes 2019-nCoV Tax:2697049
100 1491-1506 Species denotes betacoronavirus Tax:694002
101 247-256 Disease denotes pneumonia MESH:D011014
102 549-568 Disease denotes 2019-nCoV infection MESH:C000657245
103 1687-1696 Disease denotes infection MESH:D007239
136 2807-2810 Gene denotes the Gene:25085
137 2748-2751 Gene denotes the Gene:25085
138 2574-2577 Gene denotes the Gene:25085
139 2288-2291 Gene denotes The Gene:25085
140 2148-2151 Gene denotes the Gene:25085
141 2082-2085 Gene denotes the Gene:25085
142 1807-1810 Gene denotes the Gene:25085
143 2896-2898 Gene denotes to Gene:6999
144 2405-2407 Gene denotes to Gene:6999
145 2622-2624 Gene denotes of Gene:6688
146 2165-2167 Gene denotes of Gene:6688
147 2099-2101 Gene denotes of Gene:6688
148 1712-1725 Species denotes Coronaviruses Tax:11118
149 1727-1731 Species denotes CoVs Tax:11118
150 1902-1906 Species denotes CoVs Tax:11118
151 1941-1956 Species denotes Betacoronavirus Tax:694002
152 1958-1962 Species denotes βCoV Tax:694002
153 2190-2194 Species denotes CoVs Tax:11118
154 2271-2276 Species denotes human Tax:9606
155 2359-2367 Species denotes SARS-CoV Tax:694009
156 2484-2520 Species denotes Middle East respiratory syndrome CoV Tax:1335626
157 2522-2530 Species denotes MERS-CoV Tax:1335626
158 2732-2741 Species denotes mammalian Tax:9606
159 2774-2788 Species denotes Paguma larvata Tax:9675
160 2794-2802 Species denotes SARS-CoV Tax:694009
161 2811-2820 Species denotes dromedary Tax:9838
162 2821-2826 Species denotes camel Tax:9838
163 2828-2847 Species denotes Camelus dromedarius Tax:9838
164 2853-2861 Species denotes MERS-CoV Tax:1335626
165 2906-2912 Species denotes humans Tax:9606
166 2453-2463 Disease denotes infections MESH:D007239
167 2472-2478 Disease denotes deaths MESH:D003643
222 3999-4001 Gene denotes As Gene:112935892
223 3543-3545 Gene denotes as Gene:112935892
224 4230-4233 Gene denotes The Gene:25085
225 4169-4172 Gene denotes The Gene:25085
226 3782-3785 Gene denotes the Gene:25085
227 3121-3124 Gene denotes The Gene:25085
228 4343-4345 Gene denotes to Gene:6999
229 4054-4056 Gene denotes to Gene:6999
230 4249-4251 Gene denotes of Gene:6688
231 4187-4189 Gene denotes of Gene:6688
232 4122-4124 Gene denotes of Gene:6688
233 4002-4004 Gene denotes of Gene:6688
234 3853-3855 Gene denotes of Gene:6688
235 3840-3842 Gene denotes of Gene:6688
236 3831-3833 Gene denotes of Gene:6688
237 3723-3725 Gene denotes of Gene:6688
238 2940-2944 Species denotes CoVs Tax:11118
239 2966-2971 Species denotes human Tax:9606
240 2991-3000 Species denotes HCoV-229E Tax:11137
241 3021-3025 Species denotes βCoV Tax:694002
242 3027-3036 Species denotes HCoV-OC43 Tax:31631
243 3050-3059 Species denotes HCoV-HKU1 Tax:290028
244 3073-3081 Species denotes SARS-CoV Tax:694009
245 3098-3106 Species denotes MERS-CoV Tax:1335626
246 3125-3129 Species denotes βCoV Tax:694002
247 3140-3149 Species denotes HCoV-OC43 Tax:31631
248 3154-3163 Species denotes HCoV-HKU1 Tax:290028
249 3355-3363 Species denotes SARS-CoV Tax:694009
250 3375-3379 Species denotes βCoV Tax:694002
251 3385-3393 Species denotes MERS-CoV Tax:1335626
252 3405-3409 Species denotes βCoV Tax:694002
253 3957-3966 Species denotes novel CoV Tax:2697049
254 3989-3997 Species denotes patients Tax:9606
255 4025-4033 Species denotes patients Tax:9606
256 4082-4091 Species denotes novel CoV Tax:2697049
257 4258-4266 Species denotes patients Tax:9606
258 4436-4444 Species denotes patients Tax:9606
259 3192-3220 Disease denotes upper respiratory infections MESH:D012141
260 3269-3297 Disease denotes respiratory tract infections MESH:D012141
261 3434-3461 Disease denotes respiratory tract infection MESH:D012141
262 3467-3502 Disease denotes acute respiratory distress syndrome MESH:D012128
263 3546-3554 Disease denotes diarrhea MESH:D003967
264 3556-3567 Disease denotes lymphopenia MESH:D008231
265 3614-3645 Disease denotes multiorgan dysfunction syndrome MESH:D009102
266 3707-3716 Disease denotes mortality MESH:D003643
267 3843-3852 Disease denotes pneumonia MESH:D011014
268 4062-4071 Disease denotes infection MESH:D007239
269 4130-4139 Disease denotes pneumonia MESH:D011014
270 4276-4281 Disease denotes fever MESH:D005334
271 4283-4290 Disease denotes malaise MESH:D005221
272 4292-4301 Disease denotes dry cough MESH:D003371
273 4307-4314 Disease denotes dyspnea MESH:D004417
274 4423-4427 Disease denotes died MESH:D003643
275 4449-4458 Disease denotes pneumonia MESH:D011014
286 4824-4827 Gene denotes the Gene:25085
287 4769-4772 Gene denotes the Gene:25085
288 4649-4652 Gene denotes the Gene:25085
289 4631-4633 Gene denotes to Gene:6999
290 4781-4783 Gene denotes of Gene:6688
291 4567-4569 Gene denotes of Gene:6688
292 4682-4691 Species denotes 2019-nCoV Tax:2697049
293 4715-4722 Species denotes patient Tax:9606
294 4794-4798 Species denotes CoVs Tax:11118
295 4570-4589 Disease denotes 2019-nCoV infection MESH:C000657245
369 6878-6881 Gene denotes Bat Gene:570
370 6821-6824 Gene denotes Bat Gene:570
371 6764-6767 Gene denotes Bat Gene:570
372 6527-6530 Gene denotes Bat Gene:570
373 6459-6462 Gene denotes Bat Gene:570
374 6429-6432 Gene denotes bat Gene:570
375 6373-6376 Gene denotes Bat Gene:570
376 6344-6347 Gene denotes bat Gene:570
377 6289-6292 Gene denotes Bat Gene:570
378 6211-6214 Gene denotes Bat Gene:570
379 6133-6136 Gene denotes Bat Gene:570
380 6063-6066 Gene denotes Bat Gene:570
381 5989-5992 Gene denotes Bat Gene:570
382 5929-5932 Gene denotes Bat Gene:570
383 5398-5401 Gene denotes the Gene:25085
384 5852-5856 Gene denotes SARS Gene:6301
385 5454-5462 Species denotes SARS-CoV Tax:694009
386 5473-5497 Species denotes SARS-related coronavirus Tax:694009
387 5531-5539 Species denotes SARS-CoV Tax:694009
388 5550-5571 Species denotes SARS coronavirus BJ01 Tax:228407
389 5586-5612 Species denotes SARS coronavirus HKU-39849 Tax:228404
390 5618-5644 Species denotes SARS coronavirus HKU-39849 Tax:228404
391 5664-5669 Species denotes Human Tax:9606
392 5670-5678 Species denotes SARS-CoV Tax:694009
393 5689-5710 Species denotes SARS coronavirus GZ02 Tax:256753
394 5725-5730 Species denotes Human Tax:9606
395 5731-5734 Species denotes CoV Tax:11118
396 5745-5767 Species denotes Human coronavirus OC43 Tax:31631
397 5815-5843 Species denotes SARS coronavirus HC/SZ/61/03 Tax:260069
398 5872-5884 Species denotes Bat CoV HKU9 Tax:694006
399 5892-5914 Species denotes Bat coronavirus HKU9-1 Tax:424367
400 5936-5939 Species denotes CoV Tax:11118
401 5951-5974 Species denotes Bat SARS CoV Rs672/2006 Tax:722424
402 5996-5999 Species denotes CoV Tax:11118
403 6014-6048 Species denotes Bat SARS-like coronavirus RsSHC014 Tax:1415851
404 6070-6073 Species denotes CoV Tax:11118
405 6086-6118 Species denotes Bat SARS-like coronavirus Rs3367 Tax:1415834
406 6140-6143 Species denotes CoV Tax:11118
407 6156-6181 Species denotes Bat SARS-like coronavirus Tax:1508227
408 6218-6221 Species denotes CoV Tax:11118
409 6234-6259 Species denotes Bat SARS-like coronavirus Tax:1508227
410 6296-6299 Species denotes CoV Tax:11118
411 6310-6335 Species denotes Bat SARS-like coronavirus Tax:1508227
412 6380-6383 Species denotes CoV Tax:11118
413 6395-6420 Species denotes Bat SARS-like coronavirus Tax:1508227
414 6463-6466 Species denotes CoV Tax:11118
415 6480-6512 Species denotes Coronavirus BtRs-BetaCoV/YN2018C Tax:2591236
416 6531-6534 Species denotes CoV Tax:11118
417 6548-6559 Species denotes Coronavirus Tax:11118
418 6565-6572 Species denotes BetaCoV Tax:694002
419 6608-6613 Species denotes Human Tax:9606
420 6614-6623 Species denotes 2019-nCoV Tax:2697049
421 6650-6655 Species denotes Human Tax:9606
422 6656-6659 Species denotes CoV Tax:11118
423 6670-6692 Species denotes Human coronavirus 229E Tax:11137
424 6707-6721 Species denotes Human CoV HKU1 Tax:290028
425 6727-6749 Species denotes Human coronavirus HKU1 Tax:290028
426 6768-6771 Species denotes CoV Tax:11118
427 6784-6806 Species denotes Bat coronavirus HKU4-1 Tax:424359
428 6825-6828 Species denotes CoV Tax:11118
429 6841-6863 Species denotes Bat coronavirus HKU5-1 Tax:424363
430 6882-6898 Species denotes SARS-related CoV Tax:694009
431 6912-6944 Species denotes Bat coronavirus BM48-31/BGR/2008 Tax:864596
432 6959-6964 Species denotes Human Tax:9606
433 6965-6973 Species denotes MERS-CoV Tax:1335626
434 6979-7023 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
435 5679-5683 Species denotes GZ02 Tax:256753
436 5798-5809 Species denotes HC/SZ/61/03 Tax:260069
437 5940-5950 Species denotes Rs672 2006 Tax:722424
438 6660-6664 Species denotes 229E Tax:11137
439 6772-6778 Species denotes HKU4-1 Tax:424359
440 6829-6835 Species denotes HKU5-1 Tax:424363
441 6587-6599 CellLine denotes MN975262 HKU CVCL:U508
443 5329-5342 Species denotes coronaviruses Tax:11118
447 7081-7084 Gene denotes the Gene:25085
448 7069-7071 Gene denotes to Gene:6999
449 7029-7044 Chemical denotes aOne nucleotide
461 5295-5297 Gene denotes as Gene:112935892
462 5298-5301 Gene denotes the Gene:25085
463 5024-5027 Gene denotes The Gene:25085
464 4909-4912 Gene denotes The Gene:25085
465 5060-5062 Gene denotes of Gene:6688
466 4938-4940 Gene denotes of Gene:6688
467 4941-4950 Species denotes 2019-nCoV Tax:2697049
468 5106-5111 Species denotes human Tax:9606
469 5201-5206 Species denotes human Tax:9606
470 5274-5287 Species denotes E coronavirus Tax:28293
471 5003-5011 CellLine denotes MN975262 CVCL:U508
510 7475-7478 Gene denotes The Gene:25085
511 7707-7710 Gene denotes the Gene:25085
512 8548-8551 Gene denotes the Gene:25085
513 8833-8835 Gene denotes as Gene:112935892
514 7542-7544 Gene denotes as Gene:112935892
515 8857-8860 Gene denotes the Gene:25085
516 8788-8791 Gene denotes The Gene:25085
517 8612-8615 Gene denotes the Gene:25085
518 8452-8455 Gene denotes the Gene:25085
519 8372-8375 Gene denotes the Gene:25085
520 8125-8128 Gene denotes the Gene:25085
521 7720-7723 Gene denotes the Gene:25085
522 7665-7668 Gene denotes the Gene:25085
523 7618-7621 Gene denotes The Gene:25085
524 7595-7598 Gene denotes the Gene:25085
525 7554-7557 Gene denotes the Gene:25085
526 7527-7530 Gene denotes the Gene:25085
527 7456-7459 Gene denotes the Gene:25085
528 7401-7404 Gene denotes the Gene:25085
529 7359-7362 Gene denotes the Gene:25085
530 7316-7319 Gene denotes The Gene:25085
531 7189-7192 Gene denotes the Gene:25085
532 8847-8849 Gene denotes to Gene:6999
533 7586-7588 Gene denotes to Gene:6999
534 7494-7496 Gene denotes to Gene:6999
535 7453-7455 Gene denotes to Gene:6999
536 8033-8037 Gene denotes orf8 Gene:43740577
537 8819-8822 Gene denotes UTR Gene:2837
538 8407-8409 Gene denotes of Gene:6688
539 8140-8142 Gene denotes of Gene:6688
540 8030-8032 Gene denotes of Gene:6688
541 7731-7733 Gene denotes of Gene:6688
542 7717-7719 Gene denotes of Gene:6688
543 7551-7553 Gene denotes of Gene:6688
544 7331-7333 Gene denotes of Gene:6688
545 8798-8806 Species denotes SARS-CoV Tax:694009
546 8587-8591 Gene denotes -UTR Gene:2837
547 8576-8579 Gene denotes UTR Gene:2837
575 10146-10149 Gene denotes bat Gene:570
576 10212-10215 Gene denotes The Gene:25085
577 9936-9939 Gene denotes the Gene:25085
578 9896-9899 Gene denotes the Gene:25085
579 9560-9563 Gene denotes the Gene:25085
580 9520-9523 Gene denotes The Gene:25085
581 9966-9970 Gene denotes -UTR Gene:2837
582 9590-9594 Gene denotes -UTR Gene:2837
583 9996-9998 Gene denotes to Gene:6999
584 9726-9731 Gene denotes spike Gene:43740568
585 10223-10225 Gene denotes of Gene:6688
586 9982-9984 Gene denotes of Gene:6688
587 9557-9559 Gene denotes of Gene:6688
588 9483-9498 Species denotes Betacoronavirus Tax:694002
589 9524-9539 Species denotes betacoronavirus Tax:694002
590 9776-9783 Species denotes red box Tax:1226038
591 9900-9909 Species denotes 2019-nCoV Tax:2697049
592 10001-10018 Species denotes betacoronaviruses Tax:694002
593 10027-10044 Species denotes human coronavirus Tax:694448
594 10046-10056 Species denotes HCoV) HKU1 Tax:290028
595 10070-10079 Species denotes 2019-nCoV Tax:2697049
596 10098-10106 Species denotes SARS-CoV Tax:694009
597 10120-10128 Species denotes MERS-CoV Tax:1335626
598 10150-10153 Species denotes CoV Tax:11118
599 10186-10198 Species denotes bat CoV HKU9 Tax:694006
600 10133-10145 Species denotes Tylonycteris Tax:694007
601 10154-10158 Species denotes HKU4 Tax:694007
620 9315-9316 Gene denotes S Gene:43740568
621 9308-9313 Gene denotes Spike Gene:43740568
622 9328-9329 Gene denotes E Gene:43740570
623 9375-9378 Gene denotes the Gene:25085
624 9251-9254 Gene denotes the Gene:25085
625 9215-9218 Gene denotes The Gene:25085
626 9083-9086 Gene denotes the Gene:25085
627 9032-9035 Gene denotes The Gene:25085
628 8960-8963 Gene denotes the Gene:25085
629 8926-8929 Gene denotes The Gene:25085
630 9067-9069 Gene denotes to Gene:6999
631 9278-9282 Gene denotes orf1 Gene:55354
632 9261-9263 Gene denotes of Gene:6688
633 8957-8959 Gene denotes of Gene:6688
634 8964-8973 Species denotes 2019-nCoV Tax:2697049
635 9087-9096 Species denotes 2019-nCoV Tax:2697049
636 9219-9228 Species denotes 2019-nCoV Tax:2697049
637 9456-9460 Species denotes CoVs Tax:11118
643 12319-12322 Gene denotes the Gene:25085
644 12661-12663 Gene denotes of Gene:6688
645 12355-12357 Gene denotes of Gene:6688
646 12327-12329 Gene denotes of Gene:6688
647 12432-12440 Gene denotes helicase Gene:164045
650 11613-11615 Gene denotes as Gene:112935892
651 11573-11575 Gene denotes of Gene:6688
658 12834-12837 Gene denotes bat Gene:570
659 13047-13052 Gene denotes Spike Gene:43740568
660 13149-13153 Gene denotes Orf8 Gene:43740577
661 12808-12817 Species denotes 2019-nCoV Tax:2697049
662 12818-12827 Species denotes 2019-nCoV Tax:2697049
663 12854-12862 Species denotes SARS-CoV Tax:694009
668 12708-12711 Gene denotes the Gene:25085
669 12712-12734 Species denotes 2019 novel coronavirus Tax:2697049
670 12739-12764 Species denotes bat SARS-like coronavirus Tax:1508227
671 12774-12782 Species denotes SARS-CoV Tax:694009
704 11107-11116 Gene denotes helicase) Gene:164045
705 11282-11284 Gene denotes of Gene:6688
706 11329-11332 Gene denotes The Gene:25085
707 11264-11267 Gene denotes the Gene:25085
708 11199-11202 Gene denotes the Gene:25085
709 11162-11165 Gene denotes the Gene:25085
710 10820-10823 Gene denotes the Gene:25085
711 10799-10802 Gene denotes the Gene:25085
712 10746-10749 Gene denotes the Gene:25085
713 10687-10690 Gene denotes The Gene:25085
714 10570-10573 Gene denotes The Gene:25085
715 10502-10505 Gene denotes The Gene:25085
716 10415-10418 Gene denotes the Gene:25085
717 11483-11485 Gene denotes to Gene:6999
718 10625-10627 Gene denotes to Gene:6999
719 11437-11442 Gene denotes Spike Gene:43740568
720 11395-11400 Gene denotes Spike Gene:43740568
721 11450-11454 Gene denotes orf8 Gene:43740577
722 11405-11409 Gene denotes orf8 Gene:43740577
723 10586-10589 Gene denotes UTR Gene:2837
724 11306-11308 Gene denotes of Gene:6688
725 11196-11198 Gene denotes of Gene:6688
726 10817-10819 Gene denotes of Gene:6688
727 10676-10678 Gene denotes of Gene:6688
728 10634-10636 Gene denotes of Gene:6688
729 10600-10602 Gene denotes of Gene:6688
730 10353-10355 Gene denotes of Gene:6688
731 10603-10612 Species denotes 2019-nCoV Tax:2697049
732 11285-11294 Species denotes 2019-nCoV Tax:2697049
733 11309-11317 Species denotes SARS-CoV Tax:694009
734 11359-11368 Species denotes SARSr-CoV Tax:694009
735 11373-11381 Species denotes SARS-CoV Tax:694009
754 15411-15414 Gene denotes bat Gene:570
755 15391-15394 Gene denotes bat Gene:570
756 15707-15710 Gene denotes the Gene:25085
757 15689-15692 Gene denotes the Gene:25085
758 15664-15667 Gene denotes the Gene:25085
759 15645-15648 Gene denotes the Gene:25085
760 15619-15622 Gene denotes The Gene:25085
761 15272-15277 Gene denotes Spike Gene:43740568
762 15226-15231 Gene denotes Spike Gene:43740568
763 15704-15706 Gene denotes of Gene:6688
764 15302-15304 Gene denotes of Gene:6688
765 15269-15271 Gene denotes of Gene:6688
766 15223-15225 Gene denotes of Gene:6688
767 15202-15204 Gene denotes of Gene:6688
768 15305-15314 Species denotes 2019-nCoV Tax:2697049
769 15356-15381 Species denotes bat SARS-like coronavirus Tax:1508227
770 15496-15512 Species denotes SARS coronavirus Tax:694009
771 15345-15353 CellLine denotes MN975262 CVCL:U508
804 16441-16444 Gene denotes the Gene:25085
805 16222-16225 Gene denotes Tor Gene:6097
806 16079-16082 Gene denotes bat Gene:570
807 16055-16058 Gene denotes bat Gene:570
808 16034-16037 Gene denotes bat Gene:570
809 16017-16020 Gene denotes bat Gene:570
810 16000-16003 Gene denotes bat Gene:570
811 16917-16920 Gene denotes the Gene:25085
812 16622-16625 Gene denotes the Gene:25085
813 16556-16559 Gene denotes the Gene:25085
814 16509-16512 Gene denotes the Gene:25085
815 16409-16412 Gene denotes The Gene:25085
816 15881-15886 Gene denotes Spike Gene:43740568
817 15786-15791 Gene denotes Spike Gene:43740568
818 16831-16833 Gene denotes of Gene:6688
819 16778-16780 Gene denotes of Gene:6688
820 16567-16569 Gene denotes of Gene:6688
821 16506-16508 Gene denotes of Gene:6688
822 15911-15913 Gene denotes of Gene:6688
823 15878-15880 Gene denotes of Gene:6688
824 15780-15782 Gene denotes of Gene:6688
825 15759-15761 Gene denotes of Gene:6688
826 15914-15923 Species denotes 2019-nCoV Tax:2697049
827 15965-15990 Species denotes bat SARS-like coronavirus Tax:1508227
828 16041-16044 Species denotes CoV Tax:11118
829 16062-16065 Species denotes CoV Tax:11118
830 16086-16089 Species denotes CoV Tax:11118
831 16196-16217 Species denotes SARS coronavirus GZ02 Tax:256753
832 16293-16301 Species denotes SARS-CoV Tax:694009
833 16781-16790 Species denotes 2019-nCoV Tax:2697049
834 16090-16094 Species denotes HKU3 Tax:290028
835 15954-15962 CellLine denotes MN975262 CVCL:U508
894 13257-13260 Gene denotes The Gene:25085
895 14131-14133 Gene denotes of Gene:6688
896 14734-14737 Gene denotes bat Gene:570
897 14446-14449 Gene denotes bat Gene:570
898 13949-13952 Gene denotes bat Gene:570
899 13626-13629 Gene denotes bat Gene:570
900 14665-14667 Gene denotes as Gene:112935892
901 14608-14610 Gene denotes as Gene:112935892
902 15058-15061 Gene denotes the Gene:25085
903 15023-15026 Gene denotes The Gene:25085
904 14858-14861 Gene denotes the Gene:25085
905 14726-14729 Gene denotes the Gene:25085
906 14611-14614 Gene denotes the Gene:25085
907 14496-14499 Gene denotes the Gene:25085
908 14230-14233 Gene denotes the Gene:25085
909 14202-14205 Gene denotes the Gene:25085
910 14153-14156 Gene denotes the Gene:25085
911 14104-14107 Gene denotes the Gene:25085
912 14036-14039 Gene denotes the Gene:25085
913 14002-14005 Gene denotes the Gene:25085
914 13941-13944 Gene denotes the Gene:25085
915 13875-13878 Gene denotes the Gene:25085
916 13705-13708 Gene denotes the Gene:25085
917 13618-13621 Gene denotes the Gene:25085
918 13532-13535 Gene denotes the Gene:25085
919 13379-13382 Gene denotes the Gene:25085
920 14793-14795 Gene denotes to Gene:6999
921 14713-14715 Gene denotes to Gene:6999
922 13930-13932 Gene denotes to Gene:6999
923 15062-15067 Gene denotes Spike Gene:43740568
924 14500-14505 Gene denotes spike Gene:43740568
925 13205-13210 Gene denotes Spike Gene:43740568
926 13953-13957 Gene denotes SARS Gene:6301
927 14271-14273 Gene denotes of Gene:6688
928 14101-14103 Gene denotes of Gene:6688
929 13938-13940 Gene denotes of Gene:6688
930 13890-13892 Gene denotes of Gene:6688
931 13615-13617 Gene denotes of Gene:6688
932 13547-13549 Gene denotes of Gene:6688
933 13234-13236 Gene denotes of Gene:6688
934 13550-13559 Species denotes 2019-nCoV Tax:2697049
935 13640-13644 Species denotes CoVs Tax:11118
936 13649-13652 Species denotes CoV Tax:11118
937 13679-13687 Species denotes SARS-CoV Tax:694009
938 13893-13902 Species denotes 2019-nCoV Tax:2697049
939 13963-13967 Species denotes CoVs Tax:11118
940 13978-13986 Species denotes SARS-CoV Tax:694009
941 14405-14414 Species denotes 2019-nCoV Tax:2697049
942 14425-14433 Species denotes SARS-CoV Tax:694009
943 14456-14460 Species denotes CoVs Tax:11118
944 14569-14577 Species denotes SARS-CoV Tax:694009
945 14654-14659 Species denotes human Tax:9606
946 14738-14762 Species denotes SARS-related coronavirus Tax:694009
947 14796-14805 Species denotes 2019-nCoV Tax:2697049
948 14827-14831 Species denotes rats Tax:10116
949 13630-13634 Gene denotes SARS Gene:6301
950 14842-14854 Disease denotes inflammation MESH:D007249
951 14979-14981 CellLine denotes E6 CVCL:4582
957 18374-18376 Gene denotes of Gene:6688
958 18342-18344 Gene denotes of Gene:6688
959 18408-18417 Species denotes 2019-nCoV Tax:2697049
960 18433-18441 Species denotes SARS-CoV Tax:694009
961 18446-18462 Species denotes SARS-related CoV Tax:694009
991 17460-17462 Gene denotes as Gene:112935892
992 18103-18105 Gene denotes of Gene:6688
993 18178-18181 Gene denotes bat Gene:570
994 17702-17705 Gene denotes bat Gene:570
995 17451-17453 Gene denotes as Gene:112935892
996 18232-18235 Gene denotes The Gene:25085
997 18106-18109 Gene denotes the Gene:25085
998 17770-17773 Gene denotes the Gene:25085
999 17584-17586 Gene denotes to Gene:6999
1000 17182-17184 Gene denotes to Gene:6999
1001 17164-17166 Gene denotes to Gene:6999
1002 17017-17019 Gene denotes to Gene:6999
1003 17041-17045 Gene denotes SARS Gene:6301
1004 18247-18249 Gene denotes of Gene:6688
1005 17813-17815 Gene denotes of Gene:6688
1006 17606-17608 Gene denotes of Gene:6688
1007 17191-17193 Gene denotes of Gene:6688
1008 17029-17037 Species denotes SARS-CoV Tax:694009
1009 17048-17051 Species denotes CoV Tax:11118
1010 17114-17122 Species denotes SARS-CoV Tax:694009
1011 17706-17722 Species denotes SARS-related-CoV Tax:694009
1012 17816-17824 Species denotes SARS-CoV Tax:694009
1013 17886-17902 Species denotes SARS-related-CoV Tax:694009
1014 18182-18198 Species denotes SARS-related-CoV Tax:694009
1015 18270-18279 Species denotes 2019-nCoV Tax:2697049
1016 17442-17450 Disease denotes necrosis MESH:D009336
1017 17513-17521 Disease denotes necrosis MESH:D009336
1018 17364-17366 CellLine denotes E6 CVCL:4582
1019 17375-17379 CellLine denotes 293T CVCL:0063
1043 20898-20901 Gene denotes bat Gene:570
1044 21378-21381 Gene denotes the Gene:25085
1045 21360-21363 Gene denotes the Gene:25085
1046 21329-21332 Gene denotes the Gene:25085
1047 21310-21313 Gene denotes the Gene:25085
1048 21278-21281 Gene denotes The Gene:25085
1049 21147-21150 Gene denotes the Gene:25085
1050 21098-21101 Gene denotes The Gene:25085
1051 21048-21051 Gene denotes the Gene:25085
1052 20702-20704 Gene denotes to Gene:6999
1053 21431-21435 Gene denotes Orf8 Gene:43740577
1054 20763-20767 Gene denotes orf8 Gene:43740577
1055 20697-20701 Gene denotes orf8 Gene:43740577
1056 21428-21430 Gene denotes of Gene:6688
1057 21375-21377 Gene denotes of Gene:6688
1058 20789-20791 Gene denotes of Gene:6688
1059 20760-20762 Gene denotes of Gene:6688
1060 20694-20696 Gene denotes of Gene:6688
1061 20792-20801 Species denotes 2019-nCoV Tax:2697049
1062 20843-20868 Species denotes bat SARS-like coronavirus Tax:1508227
1063 20983-20999 Species denotes SARS coronavirus Tax:694009
1064 20878-20881 Gene denotes bat Gene:570
1065 20832-20840 CellLine denotes MN975262 CVCL:U508
1159 19056-19059 Gene denotes the Gene:25085
1160 19333-19337 Gene denotes orf8 Gene:43740577
1161 20133-20136 Gene denotes bat Gene:570
1162 20128-20131 Gene denotes bat Gene:570
1163 19917-19920 Gene denotes bat Gene:570
1164 19766-19769 Gene denotes bat Gene:570
1165 19704-19707 Gene denotes bat Gene:570
1166 19639-19642 Gene denotes bat Gene:570
1167 19589-19592 Gene denotes bat Gene:570
1168 19122-19125 Gene denotes bat Gene:570
1169 19007-19010 Gene denotes Bat Gene:570
1170 18985-18988 Gene denotes bat Gene:570
1171 18686-18689 Gene denotes bat Gene:570
1172 19809-19811 Gene denotes As Gene:112935892
1173 20008-20011 Gene denotes the Gene:25085
1174 19969-19972 Gene denotes the Gene:25085
1175 19885-19888 Gene denotes the Gene:25085
1176 19861-19864 Gene denotes the Gene:25085
1177 19682-19685 Gene denotes the Gene:25085
1178 19512-19515 Gene denotes the Gene:25085
1179 19465-19468 Gene denotes the Gene:25085
1180 19364-19367 Gene denotes the Gene:25085
1181 19329-19332 Gene denotes The Gene:25085
1182 19298-19301 Gene denotes the Gene:25085
1183 19209-19212 Gene denotes the Gene:25085
1184 19171-19174 Gene denotes the Gene:25085
1185 19155-19158 Gene denotes the Gene:25085
1186 18787-18790 Gene denotes the Gene:25085
1187 18558-18561 Gene denotes the Gene:25085
1188 20567-20569 Gene denotes to Gene:6999
1189 20352-20354 Gene denotes to Gene:6999
1190 19858-19860 Gene denotes to Gene:6999
1191 19725-19727 Gene denotes to Gene:6999
1192 19283-19285 Gene denotes to Gene:6999
1193 19206-19208 Gene denotes to Gene:6999
1194 20539-20543 Gene denotes orf8 Gene:43740577
1195 20466-20470 Gene denotes orf8 Gene:43740577
1196 20022-20026 Gene denotes orf8 Gene:43740577
1197 19987-19991 Gene denotes orf8 Gene:43740577
1198 19822-19826 Gene denotes orf8 Gene:43740577
1199 19633-19637 Gene denotes orf8 Gene:43740577
1200 19437-19441 Gene denotes orf8 Gene:43740577
1201 19302-19306 Gene denotes orf8 Gene:43740577
1202 19090-19094 Gene denotes orf8 Gene:43740577
1203 18815-18819 Gene denotes orf8 Gene:43740577
1204 18728-18732 Gene denotes orf8 Gene:43740577
1205 18520-18524 Gene denotes orf8 Gene:43740577
1206 20471-20473 Gene denotes of Gene:6688
1207 20179-20181 Gene denotes of Gene:6688
1208 19914-19916 Gene denotes of Gene:6688
1209 18812-18814 Gene denotes of Gene:6688
1210 18562-18577 Species denotes Betacoronavirus Tax:694002
1211 18588-18601 Species denotes coronaviruses Tax:11118
1212 18609-18618 Species denotes SARS-CoVs Tax:694009
1213 18645-18653 Species denotes patients Tax:9606
1214 18665-18674 Species denotes SARS-CoVs Tax:694009
1215 18690-18707 Species denotes SARS-related CoVs Tax:694009
1216 18873-18881 Species denotes SARS-CoV Tax:694009
1217 18917-18922 Species denotes human Tax:9606
1218 18923-18931 Species denotes patients Tax:9606
1219 18989-19005 Species denotes SARS-related-CoV Tax:694009
1220 19011-19014 Species denotes CoV Tax:11118
1221 19069-19077 Species denotes SARS-CoV Tax:694009
1222 19126-19142 Species denotes SARS-related-CoV Tax:694009
1223 19159-19167 Species denotes SARS-CoV Tax:694009
1224 19183-19188 Species denotes human Tax:9606
1225 19213-19222 Species denotes 2019-nCoV Tax:2697049
1226 19402-19410 Species denotes SARS-CoV Tax:694009
1227 19449-19457 Species denotes SARS-CoV Tax:694009
1228 19489-19497 Species denotes SARS-CoV Tax:694009
1229 19529-19534 Species denotes human Tax:9606
1230 19535-19543 Species denotes SARS-CoV Tax:694009
1231 19557-19565 Species denotes SARS-CoV Tax:694009
1232 19574-19582 Species denotes SARS-CoV Tax:694009
1233 19593-19609 Species denotes SARS-related-CoV Tax:694009
1234 19643-19646 Species denotes CoV Tax:11118
1235 19671-19680 Species denotes 2019-nCoV Tax:2697049
1236 19708-19724 Species denotes SARS-related-CoV Tax:694009
1237 19728-19737 Species denotes 2019-nCoV Tax:2697049
1238 19741-19744 Species denotes CoV Tax:11118
1239 19770-19786 Species denotes SARS-related-CoV Tax:694009
1240 19840-19849 Species denotes 2019-nCoV Tax:2697049
1241 19921-19937 Species denotes SARS-related-CoV Tax:694009
1242 19977-19986 Species denotes 2019-nCoV Tax:2697049
1243 20055-20063 Species denotes SARS-CoV Tax:694009
1244 20114-20122 Species denotes SARS-CoV Tax:694009
1245 20137-20140 Species denotes CoV Tax:11118
1246 20182-20191 Species denotes 2019-nCoV Tax:2697049
1247 20307-20315 Species denotes SARS-CoV Tax:694009
1248 20474-20483 Species denotes 2019-nCoV Tax:2697049
1249 19458-19462 Species denotes GZ02 Tax:256753
1250 19787-19791 Species denotes HKU3 Tax:290028
1251 20174-20178 Gene denotes orf8 Gene:43740577
1253 21637-21646 Species denotes 2019-nCoV Tax:2697049
1257 23338-23343 Gene denotes Spike Gene:43740568
1258 23159-23162 Gene denotes the Gene:25085
1259 23307-23309 Gene denotes of Gene:6688
1305 23075-23078 Gene denotes the Gene:25085
1306 22749-22752 Gene denotes bat Gene:570
1307 22694-22697 Gene denotes bat Gene:570
1308 22506-22509 Gene denotes bat Gene:570
1309 22117-22120 Gene denotes bat Gene:570
1310 21728-21731 Gene denotes bat Gene:570
1311 23069-23071 Gene denotes as Gene:112935892
1312 23036-23039 Gene denotes the Gene:25085
1313 22862-22865 Gene denotes the Gene:25085
1314 22521-22524 Gene denotes the Gene:25085
1315 22330-22333 Gene denotes the Gene:25085
1316 22113-22116 Gene denotes the Gene:25085
1317 22032-22035 Gene denotes the Gene:25085
1318 21941-21944 Gene denotes the Gene:25085
1319 21901-21904 Gene denotes the Gene:25085
1320 21860-21863 Gene denotes The Gene:25085
1321 21663-21666 Gene denotes The Gene:25085
1322 22327-22329 Gene denotes to Gene:6999
1323 22110-22112 Gene denotes to Gene:6999
1324 23084-23086 Gene denotes of Gene:6688
1325 22401-22403 Gene denotes of Gene:6688
1326 21926-21928 Gene denotes of Gene:6688
1327 21674-21676 Gene denotes of Gene:6688
1328 21677-21686 Species denotes 2019-nCoV Tax:2697049
1329 21732-21748 Species denotes SARS-related-CoV Tax:694009
1330 21794-21802 Species denotes SARS-CoV Tax:694009
1331 21834-21842 Species denotes SARS-CoV Tax:694009
1332 22036-22045 Species denotes 2019-nCoV Tax:2697049
1333 22121-22138 Species denotes SARS-related CoVs Tax:694009
1334 22171-22185 Species denotes horseshoe bats Tax:49442
1335 22295-22312 Species denotes novel coronavirus Tax:2697049
1336 22340-22355 Species denotes Betacoronavirus Tax:694002
1337 22412-22423 Species denotes coronavirus Tax:11118
1338 22426-22452 Species denotes SARS-related coronaviruses Tax:694009
1339 22576-22600 Species denotes SARS-related coronavirus Tax:694009
1340 22650-22658 Species denotes SARS-CoV Tax:694009
1341 22669-22685 Species denotes SARS coronavirus Tax:694009
1342 22698-22724 Species denotes SARS-related coronaviruses Tax:694009
1343 22866-22875 Species denotes 2019-nCoV Tax:2697049
1344 23008-23017 Species denotes 2019-nCoV Tax:2697049
1345 23105-23113 Species denotes SARS-CoV Tax:694009
1346 22496-22505 Species denotes horseshoe Tax:49442
1347 21814-21822 Chemical denotes AY278488
1348 21849-21857 Chemical denotes AY274119
1349 22996-23004 Disease denotes infected MESH:D007239
1370 24941-24943 Gene denotes to Gene:6999
1371 25116-25120 Gene denotes -UTR Gene:2837
1372 24773-24776 Gene denotes UTR Gene:2837
1373 24926-24928 Gene denotes as Gene:112935892
1374 24951-24954 Gene denotes the Gene:25085
1375 24892-24895 Gene denotes The Gene:25085
1376 24783-24786 Gene denotes the Gene:25085
1377 24733-24736 Gene denotes the Gene:25085
1378 25099-25103 Gene denotes -UTR Gene:2837
1379 25042-25046 Gene denotes -UTR Gene:2837
1380 24896-24900 Gene denotes SARS Gene:6301
1381 24913-24916 Gene denotes UTR Gene:2837
1382 24978-24986 Species denotes SARS-CoV Tax:694009
1383 24999-25008 Species denotes 2019-nCoV Tax:2697049
1384 25052-25060 Species denotes SARS-CoV Tax:694009
1385 25073-25082 Species denotes 2019-nCoV Tax:2697049
1386 25063-25067 Gene denotes -UTR Gene:2837
1387 25025-25029 Gene denotes -UTR Gene:2837
1388 24989-24993 Gene denotes -UTR Gene:2837
1389 24761-24764 Gene denotes UTR Gene:2837
1455 23503-23506 Gene denotes SL1 Gene:9014
1456 23938-23941 Gene denotes the Gene:25085
1457 24341-24344 Gene denotes bat Gene:570
1458 24185-24188 Gene denotes bat Gene:570
1459 24007-24010 Gene denotes Bat Gene:570
1460 23856-23859 Gene denotes bat Gene:570
1461 23720-23723 Gene denotes bat Gene:570
1462 23965-23967 Gene denotes as Gene:112935892
1463 23447-23449 Gene denotes As Gene:112935892
1464 24589-24592 Gene denotes The Gene:25085
1465 24476-24479 Gene denotes The Gene:25085
1466 24422-24425 Gene denotes the Gene:25085
1467 24369-24372 Gene denotes The Gene:25085
1468 24337-24340 Gene denotes the Gene:25085
1469 24271-24274 Gene denotes the Gene:25085
1470 24181-24184 Gene denotes The Gene:25085
1471 24046-24049 Gene denotes the Gene:25085
1472 23920-23923 Gene denotes The Gene:25085
1473 23883-23886 Gene denotes the Gene:25085
1474 23793-23796 Gene denotes the Gene:25085
1475 23769-23772 Gene denotes the Gene:25085
1476 23746-23749 Gene denotes the Gene:25085
1477 23716-23719 Gene denotes the Gene:25085
1478 23682-23685 Gene denotes the Gene:25085
1479 23603-23606 Gene denotes The Gene:25085
1480 23564-23567 Gene denotes The Gene:25085
1481 23474-23477 Gene denotes the Gene:25085
1482 24595-24599 Gene denotes -UTR Gene:2837
1483 24504-24508 Gene denotes -UTR Gene:2837
1484 24428-24432 Gene denotes -UTR Gene:2837
1485 24277-24281 Gene denotes -UTR Gene:2837
1486 24312-24314 Gene denotes to Gene:6999
1487 23840-23842 Gene denotes to Gene:6999
1488 23617-23620 Gene denotes SL3 Gene:4320
1489 23612-23615 Gene denotes SL2 Gene:4319
1490 23607-23610 Gene denotes SL1 Gene:9014
1491 23568-23571 Gene denotes SL3 Gene:4320
1492 23513-23516 Gene denotes SL3 Gene:4320
1493 23508-23511 Gene denotes SL2 Gene:4319
1494 24189-24193 Gene denotes SARS Gene:6301
1495 23724-23728 Gene denotes SARS Gene:6301
1496 24419-24421 Gene denotes of Gene:6688
1497 24406-24408 Gene denotes of Gene:6688
1498 24320-24322 Gene denotes of Gene:6688
1499 24282-24284 Gene denotes of Gene:6688
1500 23766-23768 Gene denotes of Gene:6688
1501 23478-23486 Species denotes SARS-CoV Tax:694009
1502 23686-23695 Species denotes 2019-nCoV Tax:2697049
1503 23703-23711 Species denotes SARS-CoV Tax:694009
1504 23750-23759 Species denotes 2019-nCoV Tax:2697049
1505 23843-23851 Species denotes SARS-CoV Tax:694009
1506 23860-23876 Species denotes SARS-related CoV Tax:694009
1507 23924-23933 Species denotes 2019-nCoV Tax:2697049
1508 23968-23976 Species denotes SARS-CoV Tax:694009
1509 24011-24027 Species denotes SARS-related CoV Tax:694009
1510 24050-24058 Species denotes SARS-COV Tax:694009
1511 24199-24202 Species denotes CoV Tax:11118
1512 24285-24294 Species denotes 2019-nCoV Tax:2697049
1513 24323-24331 Species denotes SARS-CoV Tax:694009
1514 24345-24361 Species denotes SARS-related CoV Tax:694009
1515 24480-24489 Species denotes 2019-nCoV Tax:2697049
1516 24620-24629 Species denotes 2019-nCoV Tax:2697049
1517 24637-24645 Species denotes SARS-CoV Tax:694009
1518 24650-24667 Species denotes SARS-related CoVs Tax:694009
1519 23489-23493 Gene denotes -UTR Gene:2837
1535 25200-25203 Gene denotes bat Gene:570
1536 25607-25610 Gene denotes the Gene:25085
1537 25519-25522 Gene denotes the Gene:25085
1538 25470-25473 Gene denotes the Gene:25085
1539 25396-25398 Gene denotes to Gene:6999
1540 25305-25307 Gene denotes to Gene:6999
1541 25197-25199 Gene denotes to Gene:6999
1542 25134-25143 Species denotes 2019-nCoV Tax:2697049
1543 25165-25180 Species denotes Betacoronavirus Tax:694002
1544 25204-25230 Species denotes SARS-related coronaviruses Tax:694009
1545 25561-25572 Species denotes coronavirus Tax:11118
1546 25595-25600 Species denotes human Tax:9606
1547 25649-25657 Species denotes SARS-CoV Tax:694009
1548 25662-25670 Species denotes MERS-CoV Tax:1335626
1549 25621-25629 Disease denotes zoonotic MESH:D015047
1554 25800-25803 Gene denotes the Gene:25085
1555 25725-25728 Gene denotes the Gene:25085
1556 25690-25693 Gene denotes The Gene:25085
1557 25797-25799 Gene denotes of Gene:6688
1560 25884-25887 Gene denotes the Gene:25085
1561 25856-25858 Gene denotes of Gene:6688

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 522-528 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T2 616-623 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T3 638-644 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 666-676 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T5 1014-1024 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T6 1128-1135 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T7 1189-1196 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T8 1211-1216 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T9 1780-1783 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 2086-2090 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T11 2152-2156 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T12 2762-2766 Body_part denotes palm http://purl.org/sig/ont/fma/fma24920
T13 3263-3286 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T14 3428-3451 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T15 3578-3583 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T16 4485-4490 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T17 4701-4707 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T18 4773-4780 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T19 4922-4928 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T20 5052-5059 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T21 5228-5232 Body_part denotes palm http://purl.org/sig/ont/fma/fma24920
T22 5427-5433 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T23 7034-7044 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T24 7064-7068 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T25 7105-7111 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T26 7734-7744 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T27 8143-8150 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T28 8199-8204 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T29 8224-8234 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T30 8275-8292 Body_part denotes neural networking http://purl.org/sig/ont/fma/fma74616
T31 8906-8912 Body_part denotes Genome http://purl.org/sig/ont/fma/fma84116
T32 8946-8949 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T33 8950-8956 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T34 8984-8995 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T35 9019-9030 Body_part denotes amino acids http://purl.org/sig/ont/fma/fma82739
T36 9097-9103 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T37 9229-9235 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T38 9298-9306 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T39 9402-9406 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T40 9499-9505 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T41 9540-9546 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T42 9664-9672 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T43 9707-9715 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T44 9814-9822 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T45 9834-9842 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T46 9924-9930 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T47 10419-10425 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T48 10538-10549 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740
T49 10654-10664 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T50 10824-10830 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T51 10886-10894 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T52 10942-10950 Body_part denotes cysteine http://purl.org/sig/ont/fma/fma82751
T53 11062-11065 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T54 11076-11079 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T55 11593-11601 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T56 11674-11684 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T57 11826-11828 Body_part denotes PL http://purl.org/sig/ont/fma/fma273007
T58 12172-12175 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T59 12176-12179 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T60 12371-12374 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T61 12385-12388 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T62 12473-12477 Body_part denotes ExoN http://purl.org/sig/ont/fma/fma84120
T63 12680-12690 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T64 12784-12794 Body_part denotes Amino acid http://purl.org/sig/ont/fma/fma82739
T65 13211-13223 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T66 13493-13504 Body_part denotes cytoplasmic http://purl.org/sig/ont/fma/fma66835
T67 14108-14118 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T68 14862-14867 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T69 14868-14874 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T70 14904-14908 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T71 14911-14920 Body_part denotes intestine http://purl.org/sig/ont/fma/fma7199
T72 14982-14987 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T73 15205-15212 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T74 15281-15291 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T75 15716-15726 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T76 15762-15769 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T77 15801-15805 Body_part denotes head http://purl.org/sig/ont/fma/fma7154
T78 15890-15900 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T79 16513-16523 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T80 16834-16844 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T81 16978-16985 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T82 17052-17059 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T83 17221-17225 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T84 17380-17385 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T85 17776-17792 Body_part denotes terminal nucleus http://purl.org/sig/ont/fma/fma54529
T86 18017-18025 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T87 18110-18119 Body_part denotes protein's http://purl.org/sig/ont/fma/fma67257
T88 18259-18266 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T89 18383-18390 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T90 18490-18497 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T91 18541-18548 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T92 18753-18763 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T93 19307-19317 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T94 19338-19345 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T95 19897-19903 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T96 20271-20281 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T97 20577-20584 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T98 20599-20604 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T99 20725-20732 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T100 20768-20778 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T101 21382-21392 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T102 21524-21529 Body_part denotes helix http://purl.org/sig/ont/fma/fma60992
T103 21667-21673 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T104 21703-21713 Body_part denotes nucleotide http://purl.org/sig/ont/fma/fma82740
T105 21905-21915 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T106 21947-21963 Body_part denotes structural genes http://purl.org/sig/ont/fma/fma74402
T107 22601-22608 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T108 23286-23296 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T109 23344-23356 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T110 23371-23378 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T111 23393-23400 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T112 23422-23425 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1211-1216 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T2 2422-2427 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T3 3263-3286 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T4 3269-3286 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T5 3428-3451 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T6 3434-3451 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T7 3578-3583 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T8 4485-4490 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 7497-7502 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T10 8199-8204 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T11 10257-10262 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T12 14862-14867 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T13 14868-14874 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T14 14904-14908 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 14911-14920 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T16 15801-15805 Body_part denotes head http://purl.obolibrary.org/obo/UBERON_0000033
T17 20599-20604 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488
T18 21524-21529 Body_part denotes helix http://purl.obolibrary.org/obo/UBERON_0002488

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 110-119 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 247-256 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 3198-3220 Phenotype denotes respiratory infections http://purl.obolibrary.org/obo/HP_0011947
T4 3263-3297 Phenotype denotes lower respiratory tract infections http://purl.obolibrary.org/obo/HP_0002783
T5 3428-3461 Phenotype denotes lower respiratory tract infection http://purl.obolibrary.org/obo/HP_0002783
T6 3473-3493 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T7 3546-3554 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T8 3556-3567 Phenotype denotes lymphopenia http://purl.obolibrary.org/obo/HP_0001888
T9 3843-3852 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 4130-4139 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 4276-4281 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T12 4283-4290 Phenotype denotes malaise http://purl.obolibrary.org/obo/HP_0012378
T13 4292-4301 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T14 4307-4314 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T15 4449-4458 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p12744s11 17154-17163 CPA denotes replicate
p12770s30 20355-20362 PosReg denotes trigger
p12770s31 20363-20376 CPA denotes intracellular
p12770s35 20397-20406 PosReg denotes activates
p12770s37 20413-20426 MPA denotes inflammasomes

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 110-119 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 187-189 Disease denotes ET http://purl.obolibrary.org/obo/MONDO_0005029
T3 247-256 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 549-568 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T5 559-568 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T6 695-699 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T7 741-749 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 898-902 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 1045-1049 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 1309-1313 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T11 1687-1696 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 2320-2353 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T13 2359-2367 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 2453-2463 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T15 2794-2802 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T16 3073-3081 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 3192-3220 Disease denotes upper respiratory infections http://purl.obolibrary.org/obo/MONDO_0024355
T18 3269-3300 Disease denotes respiratory tract infections in http://purl.obolibrary.org/obo/MONDO_0024355
T19 3355-3363 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 3434-3461 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T21 3452-3461 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 3467-3502 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T23 3473-3502 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T24 3546-3554 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T25 3556-3567 Disease denotes lymphopenia http://purl.obolibrary.org/obo/MONDO_0003783
T26 3843-3852 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 4062-4071 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 4130-4139 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T29 4449-4458 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 4570-4589 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T31 4580-4589 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 5454-5462 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 5473-5477 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T34 5531-5539 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 5550-5554 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T36 5586-5590 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T37 5618-5622 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T38 5670-5678 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T39 5689-5693 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T40 5789-5793 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 5815-5819 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T42 5852-5856 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 5955-5959 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T44 6018-6022 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 6090-6094 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T46 6160-6164 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 6238-6242 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T48 6314-6318 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T49 6399-6403 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T50 6882-6886 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T51 8798-8806 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T52 10098-10106 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T53 11309-11317 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T54 11373-11381 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T55 12743-12747 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T56 12774-12782 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T57 12813-12822 Disease denotes nCoV 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T58 12854-12862 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T59 13333-13336 Disease denotes NTD http://purl.obolibrary.org/obo/MONDO_0008449|http://purl.obolibrary.org/obo/MONDO_0018075
T61 13630-13634 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T62 13679-13687 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T63 13953-13957 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T64 13978-13986 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T65 14425-14433 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T66 14569-14577 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T67 14738-14742 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T68 14842-14867 Disease denotes inflammation in the brain http://purl.obolibrary.org/obo/MONDO_0015144
T69 14842-14854 Disease denotes inflammation http://purl.obolibrary.org/obo/MONDO_0021166
T70 15360-15364 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T71 15496-15500 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T72 15969-15973 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T73 16196-16200 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T74 16293-16301 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T75 17029-17037 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T76 17041-17045 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T77 17114-17122 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T78 17706-17710 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T79 17816-17824 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T80 17886-17890 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T81 18182-18186 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T82 18433-18441 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T83 18446-18450 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T84 18609-18613 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T85 18665-18669 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T86 18690-18694 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T87 18873-18881 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T88 18989-18993 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T89 19069-19077 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T90 19126-19130 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T91 19159-19167 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T92 19402-19410 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T93 19449-19457 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T94 19489-19497 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T95 19535-19543 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T96 19557-19565 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T97 19574-19582 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T98 19593-19597 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T99 19708-19712 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T100 19770-19774 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T101 19921-19925 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T102 20055-20063 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T103 20114-20122 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T104 20307-20315 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T105 20847-20851 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T106 20983-20987 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T107 21732-21736 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T108 21794-21802 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T109 21834-21842 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T110 22121-22125 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T111 22426-22430 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T112 22576-22580 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T113 22650-22658 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 22669-22673 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T115 22698-22702 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T116 23105-23113 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T117 23478-23486 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T118 23703-23711 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T119 23724-23728 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T120 23843-23851 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T121 23860-23864 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T122 23968-23976 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T123 24011-24015 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T124 24050-24054 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T125 24189-24193 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T126 24323-24331 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T127 24345-24349 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T128 24568-24571 Disease denotes HVR http://purl.obolibrary.org/obo/MONDO_0008641
T129 24637-24645 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T130 24650-24654 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T131 24896-24900 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T132 24978-24986 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T133 25052-25060 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T134 25204-25208 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T135 25649-25657 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 43-48 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T2 86-87 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 213-214 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T4 284-285 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 337-338 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 350-351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 460-472 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T8 514-515 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 516-521 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T10 534-535 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 658-661 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 691-694 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T13 735-740 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 789-790 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T15 809-817 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T16 877-880 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T17 892-897 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T18 1103-1104 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1178-1179 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1233-1234 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 1318-1323 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camel
T22 1349-1355 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T23 1399-1404 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 1489-1490 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T25 1784-1791 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T26 2061-2065 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T27 2086-2090 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T28 2152-2156 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T29 2271-2276 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T30 2414-2415 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 2538-2541 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T32 2549-2550 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 2648-2655 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T34 2684-2688 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T35 2821-2826 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camel
T36 2906-2912 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T37 2966-2971 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T38 3046-3047 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T39 3069-3070 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T40 3091-3092 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T41 3138-3139 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T42 3263-3286 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T43 3373-3374 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T44 3428-3451 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T45 3578-3583 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T46 3578-3583 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T47 3603-3608 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T48 3736-3738 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T49 3799-3811 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T50 3935-3942 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T51 3955-3956 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 4322-4324 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T53 4346-4347 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 4433-4435 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T55 4485-4490 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T56 4548-4549 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T57 4593-4594 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 4641-4643 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T59 4680-4681 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 4713-4714 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 5106-5114 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human or
T62 5201-5206 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T63 5208-5212 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T64 5256-5260 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T65 5448-5453 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T66 5525-5530 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T67 5664-5669 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T68 5725-5730 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T69 5745-5750 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T70 5858-5862 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T71 6305-6309 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T72 6344-6347 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T73 6359-6363 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T74 6390-6394 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T75 6429-6432 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T76 6445-6449 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T77 6475-6479 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T78 6513-6517 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T79 6543-6547 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T80 6582-6586 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T81 6608-6613 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T82 6650-6655 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T83 6670-6675 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T84 6707-6712 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T85 6727-6732 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T86 6936-6939 http://purl.obolibrary.org/obo/PR_000001807 denotes BGR
T87 6959-6964 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T88 7064-7068 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T89 7415-7419 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T90 7907-7912 http://purl.obolibrary.org/obo/CLO_0009640 denotes X [15
T91 8792-8797 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T92 8913-8925 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T93 9158-9159 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 9200-9201 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 9331-9339 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T96 9402-9406 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T97 9452-9453 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T98 9506-9518 http://purl.obolibrary.org/obo/OBI_0000245 denotes organization
T99 9625-9626 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T100 9766-9774 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T101 9870-9874 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3, 6
T102 9994-9995 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T103 10027-10032 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T104 10066-10067 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T105 10116-10117 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T106 10146-10149 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T107 10186-10189 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T108 10340-10341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 10384-10385 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 10790-10791 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T111 11203-11208 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T112 11443-11445 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T113 11611-11612 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T114 11753-11755 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T115 11753-11755 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T116 12188-12196 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T117 12308-12315 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T118 12479-12483 http://purl.obolibrary.org/obo/CLO_0001000 denotes 3′–5
T119 12608-12613 http://purl.obolibrary.org/obo/CLO_0007888 denotes MT: 2
T120 12739-12742 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T121 12768-12773 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T122 12834-12837 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T123 13099-13107 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T124 13119-13121 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T125 13160-13162 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T126 13180-13182 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T127 13183-13185 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T128 13237-13239 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T129 13244-13246 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T130 13244-13246 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T131 13261-13263 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T132 13281-13282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 13283-13289 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T134 13290-13297 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T135 13383-13385 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T136 13383-13385 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T137 13420-13427 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T138 13513-13515 http://purl.obolibrary.org/obo/PR_000005794 denotes CP
T139 13536-13538 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T140 13536-13538 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T141 13626-13629 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T142 13673-13678 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T143 13734-13742 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T144 13751-13753 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T145 13751-13753 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T146 13814-13821 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T147 13825-13831 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T148 13863-13865 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T149 13879-13881 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T150 13949-13952 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T151 13972-13977 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T152 13997-13998 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T153 14091-14092 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T154 14419-14424 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T155 14446-14449 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T156 14563-14568 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T157 14654-14659 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T158 14668-14669 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T159 14734-14737 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T160 14862-14867 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T161 14862-14867 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T162 14904-14908 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T163 14904-14908 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T164 14911-14920 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestine
T165 14911-14920 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestine
T166 14941-14948 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T167 14974-14987 http://purl.obolibrary.org/obo/CLO_0051719 denotes Vero E6 cells
T168 15068-15073 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T169 15238-15240 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T170 15238-15240 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T171 15278-15280 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T172 15278-15280 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T173 15356-15359 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T174 15391-15394 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T175 15411-15414 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T176 15490-15495 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T177 15783-15784 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T178 15801-15805 http://purl.obolibrary.org/obo/UBERON_0000033 denotes head
T179 15801-15805 http://www.ebi.ac.uk/efo/EFO_0000964 denotes head
T180 15806-15808 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T181 15814-15815 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T182 15817-15819 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T183 15887-15889 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T184 15965-15968 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T185 16000-16003 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T186 16017-16020 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T187 16034-16037 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T188 16055-16058 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T189 16079-16082 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T190 16190-16195 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T191 16570-16576 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T192 16577-16584 http://purl.obolibrary.org/obo/PR_000018263 denotes peptide
T193 16714-16715 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T194 16955-16956 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T195 17204-17209 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T196 17221-17231 http://purl.obolibrary.org/obo/CL_0000000 denotes cell types
T197 17326-17327 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T198 17359-17363 http://purl.obolibrary.org/obo/CLO_0009524 denotes Vero
T199 17359-17363 http://purl.obolibrary.org/obo/CLO_0050515 denotes Vero
T200 17375-17379 http://purl.obolibrary.org/obo/CLO_0050894 denotes 293T
T201 17375-17379 http://purl.obolibrary.org/obo/CLO_0051650 denotes 293T
T202 17375-17379 http://purl.obolibrary.org/obo/CLO_0052052 denotes 293T
T203 17380-17385 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T204 17403-17404 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T205 17632-17642 http://purl.obolibrary.org/obo/SO_0000418 denotes signalling
T206 17702-17705 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T207 17806-17812 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T208 17826-17828 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T209 17846-17854 http://purl.obolibrary.org/obo/CLO_0001658 denotes activity
T210 17960-17970 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T211 18059-18069 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T212 18153-18154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T213 18178-18181 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T214 18352-18353 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T215 18464-18465 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T216 18467-18468 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T217 18586-18587 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T218 18603-18608 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T219 18686-18689 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T220 18748-18749 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T221 18851-18854 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T222 18917-18922 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T223 18985-18988 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T224 19122-19125 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T225 19183-19188 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T226 19200-19205 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T227 19443-19448 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T228 19529-19534 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T229 19589-19592 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T230 19639-19642 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T231 19704-19707 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T232 19766-19769 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T233 19804-19805 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T234 19917-19920 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T235 20049-20054 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T236 20079-20086 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T237 20128-20131 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T238 20133-20136 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T239 20289-20292 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T240 20332-20333 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T241 20397-20406 http://purl.obolibrary.org/obo/CLO_0001658 denotes activates
T242 20494-20495 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T243 20544-20547 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T244 20548-20549 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T245 20575-20576 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T246 20621-20622 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T247 20735-20736 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T248 20843-20846 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T249 20878-20881 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T250 20898-20901 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T251 20977-20982 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T252 21177-21178 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T253 21687-21690 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T254 21728-21731 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T255 21788-21793 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T256 21828-21833 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T257 21935-21936 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T258 21958-21963 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T259 22002-22005 http://purl.obolibrary.org/obo/CLO_0051456 denotes A–E
T260 22025-22035 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes, the
T261 22073-22074 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T262 22117-22120 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T263 22181-22185 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T264 22506-22509 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T265 22557-22561 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T266 22644-22649 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T267 22660-22662 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T268 22694-22697 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T269 22749-22752 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T270 22784-22785 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T271 22824-22825 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T272 22908-22912 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T273 22984-22990 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T274 23311-23312 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T275 23335-23336 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T276 23384-23392 http://purl.obolibrary.org/obo/UBERON_0000158 denotes Membrane
T277 23468-23469 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T278 23513-23516 http://purl.obolibrary.org/obo/CLO_0053106 denotes SL3
T279 23523-23525 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T280 23568-23571 http://purl.obolibrary.org/obo/CLO_0053106 denotes SL3
T281 23598-23600 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T282 23617-23620 http://purl.obolibrary.org/obo/CLO_0053106 denotes SL3
T283 23627-23629 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T284 23697-23702 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T285 23720-23723 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T286 23773-23775 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T287 23803-23804 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T288 23856-23859 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T289 23887-23889 http://purl.obolibrary.org/obo/CLO_0008933 denotes S5
T290 23917-23918 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T291 24185-24188 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T292 24341-24344 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T293 24365-24367 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T294 24536-24538 http://purl.obolibrary.org/obo/CLO_0050050 denotes S1
T295 24540-24542 http://purl.obolibrary.org/obo/CLO_0008922 denotes S2
T296 24540-24542 http://purl.obolibrary.org/obo/CLO_0050052 denotes S2
T297 24556-24558 http://purl.obolibrary.org/obo/CLO_0007170 denotes L2
T298 24582-24585 http://purl.obolibrary.org/obo/CLO_0002755 denotes D–F
T299 24631-24636 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T300 24669-24671 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T301 24929-24930 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T302 24975-24976 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T303 24996-24997 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T304 25147-25148 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T305 25163-25164 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T306 25200-25203 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T307 25240-25243 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T308 25380-25386 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T309 25421-25427 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T310 25455-25461 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T311 25579-25582 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T312 25595-25600 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 187-189 Chemical denotes ET http://purl.obolibrary.org/obo/CHEBI_73510
T2 190-192 Chemical denotes AL http://purl.obolibrary.org/obo/CHEBI_73770
T3 666-676 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T4 1014-1024 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T5 1014-1019 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T6 1020-1024 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T7 1128-1135 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T8 1189-1196 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 1205-1210 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T10 1235-1239 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T11 1632-1641 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T12 5933-5935 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T13 5993-5995 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T14 6067-6069 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T15 6137-6139 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T16 6215-6217 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T17 6293-6295 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T18 6348-6350 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T19 6377-6379 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T20 6433-6435 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T21 7034-7044 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T22 7238-7242 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T23 7734-7744 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T24 7734-7739 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T25 7740-7744 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T26 7902-7906 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T27 8143-8150 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T28 8181-8185 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T29 8193-8198 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T30 8224-8234 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T31 8224-8229 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T32 8230-8234 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T33 8984-8995 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
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T36 9025-9030 Chemical denotes acids http://purl.obolibrary.org/obo/CHEBI_37527
T37 9298-9306 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T38 9664-9672 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T39 9707-9715 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T40 9814-9822 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T41 9834-9842 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T42 10538-10549 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976
T43 10654-10664 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T44 10886-10894 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T45 10942-10950 Chemical denotes cysteine http://purl.obolibrary.org/obo/CHEBI_15356
T46 11593-11601 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T47 11674-11684 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T48 11680-11684 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T49 11729-11738 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T50 11753-11755 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T54 11826-11828 Chemical denotes PL http://purl.obolibrary.org/obo/CHEBI_74791|http://purl.obolibrary.org/obo/CHEBI_81588
T56 12176-12179 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991
T57 12308-12315 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T58 12537-12544 Chemical denotes poly(U) http://purl.obolibrary.org/obo/CHEBI_73279
T59 12608-12610 Chemical denotes MT http://purl.obolibrary.org/obo/CHEBI_73614
T60 12617-12623 Chemical denotes ribose http://purl.obolibrary.org/obo/CHEBI_33942|http://purl.obolibrary.org/obo/CHEBI_47013
T62 12680-12690 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T63 12686-12690 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T64 12784-12794 Chemical denotes Amino acid http://purl.obolibrary.org/obo/CHEBI_33704
T65 12790-12794 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T66 12838-12840 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T67 13211-13223 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T68 13244-13246 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T69 13290-13297 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T70 13383-13385 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T71 13420-13427 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
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T73 13484-13486 Chemical denotes TM http://purl.obolibrary.org/obo/CHEBI_55460|http://purl.obolibrary.org/obo/CHEBI_74861
T75 13513-13515 Chemical denotes CP http://purl.obolibrary.org/obo/CHEBI_3380|http://purl.obolibrary.org/obo/CHEBI_73461
T77 13536-13538 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T78 13646-13648 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T79 13724-13733 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T80 13734-13742 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T81 13751-13753 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T82 14108-14118 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
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T84 14114-14118 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T85 15205-15212 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T86 15238-15240 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T87 15278-15280 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
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T89 15281-15286 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T90 15287-15291 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T91 15395-15397 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T92 15415-15417 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T93 15716-15726 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
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T95 15722-15726 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T96 15762-15769 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T97 15890-15900 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T98 15890-15895 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T99 15896-15900 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T100 16004-16006 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T101 16021-16023 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T102 16038-16040 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T103 16059-16061 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T104 16083-16085 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T105 16513-16523 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T106 16513-16518 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T107 16519-16523 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T108 16577-16584 Chemical denotes peptide http://purl.obolibrary.org/obo/CHEBI_16670
T109 16834-16844 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T110 16834-16839 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T111 16840-16844 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T112 16978-16985 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T113 17052-17059 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T114 17785-17792 Chemical denotes nucleus http://purl.obolibrary.org/obo/CHEBI_33252
T115 17835-17845 Chemical denotes antagonist http://purl.obolibrary.org/obo/CHEBI_48706
T116 17929-17939 Chemical denotes antagonist http://purl.obolibrary.org/obo/CHEBI_48706
T117 18017-18025 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T118 18048-18058 Chemical denotes antagonist http://purl.obolibrary.org/obo/CHEBI_48706
T119 18259-18266 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T120 18383-18390 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
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T122 18541-18548 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T123 18753-18763 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T124 19307-19317 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
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T126 19313-19317 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T127 19338-19345 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T128 19738-19740 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T129 19865-19870 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T130 20271-20281 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T131 20271-20276 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T132 20277-20281 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T133 20577-20584 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T134 20593-20598 Chemical denotes alpha http://purl.obolibrary.org/obo/CHEBI_30216
T135 20623-20627 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T136 20725-20732 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T137 20768-20778 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T138 20768-20773 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T139 20774-20778 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T140 20882-20884 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T141 20902-20904 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T142 21382-21392 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T143 21382-21387 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T144 21388-21392 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T145 21703-21713 Chemical denotes nucleotide http://purl.obolibrary.org/obo/CHEBI_36976
T146 21749-21751 Chemical denotes SL http://purl.obolibrary.org/obo/CHEBI_74815
T147 21905-21915 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T148 21905-21910 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T149 21911-21915 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T150 23208-23212 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T151 23286-23296 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T152 23286-23291 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T153 23292-23296 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T154 23321-23332 Chemical denotes polypeptide http://purl.obolibrary.org/obo/CHEBI_15841
T155 23344-23356 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T156 23371-23378 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T157 23393-23400 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T158 23523-23525 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T159 23627-23629 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T160 23773-23775 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T161 23887-23889 Chemical denotes S5 http://purl.obolibrary.org/obo/CHEBI_29386
T162 24540-24542 Chemical denotes S2 http://purl.obolibrary.org/obo/CHEBI_29387
T163 24544-24546 Chemical denotes S3 http://purl.obolibrary.org/obo/CHEBI_29388
T164 24548-24550 Chemical denotes S4 http://purl.obolibrary.org/obo/CHEBI_29401

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1273-1281 http://purl.obolibrary.org/obo/GO_0007612 denotes Learning
T2 1577-1589 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T3 10429-10442 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T4 11166-11179 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T5 11899-11908 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T6 12015-12024 http://purl.obolibrary.org/obo/GO_0009058 denotes formation
T7 14213-14238 http://purl.obolibrary.org/obo/GO_0051701 denotes interaction with the host
T8 14384-14396 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T9 14842-14854 http://purl.obolibrary.org/obo/GO_0006954 denotes inflammation
T10 17279-17296 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T11 17279-17296 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T12 17442-17450 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T13 17442-17450 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T14 17442-17450 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T15 17442-17450 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T16 17513-17521 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T17 17513-17521 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T18 17513-17521 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T19 17513-17521 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis
T20 17526-17535 http://purl.obolibrary.org/obo/GO_0097194 denotes apoptosis
T21 17526-17535 http://purl.obolibrary.org/obo/GO_0006915 denotes apoptosis
T22 17618-17627 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis
T23 17632-17642 http://purl.obolibrary.org/obo/GO_0023052 denotes signalling
T24 17785-17805 http://purl.obolibrary.org/obo/GO_0051647 denotes nucleus localization
T25 17793-17805 http://purl.obolibrary.org/obo/GO_0051179 denotes localization
T26 18128-18140 http://purl.obolibrary.org/obo/GO_0051179 denotes localization
T27 18218-18230 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis
T28 24409-24418 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T29 24409-24418 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T30 25333-25350 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T31 25333-25350 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication
T32 25361-25373 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-140 Sentence denotes Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan
T2 141-173 Sentence denotes EMERGING MICROBES AND INFECTIONS
T3 174-176 Sentence denotes J.
T4 177-181 Sentence denotes F-W.
T5 182-193 Sentence denotes CHAN ET AL.
T6 195-203 Sentence denotes Abstract
T7 204-212 Sentence denotes ABSTRACT
T8 213-329 Sentence denotes A mysterious outbreak of atypical pneumonia in late 2019 was traced to a seafood wholesale market in Wuhan of China.
T9 330-473 Sentence denotes Within a few weeks, a novel coronavirus tentatively named as 2019 novel coronavirus (2019-nCoV) was announced by the World Health Organization.
T10 474-624 Sentence denotes We performed bioinformatics analysis on a virus genome from a patient with 2019-nCoV infection and compared it with other related coronavirus genomes.
T11 625-750 Sentence denotes Overall, the genome of 2019-nCoV has 89% nucleotide identity with bat SARS-like-CoVZXC21 and 82% with that of human SARS-CoV.
T12 751-917 Sentence denotes The phylogenetic trees of their orf1a/b, Spike, Envelope, Membrane and Nucleoprotein also clustered closely with those of the bat, civet and human SARS coronaviruses.
T13 918-1072 Sentence denotes However, the external subdomain of Spike’s receptor binding domain of 2019-nCoV shares only 40% amino acid identity with other SARS-related coronaviruses.
T14 1073-1136 Sentence denotes Remarkably, its orf3b encodes a completely novel short protein.
T15 1137-1272 Sentence denotes Furthermore, its new orf8 likely encodes a secreted protein with an alpha-helix, following with a beta-sheet(s) containing six strands.
T16 1273-1507 Sentence denotes Learning from the roles of civet in SARS and camel in MERS, hunting for the animal source of 2019-nCoV and its more ancestral virus would be important for understanding the origin and evolution of this novel lineage B betacoronavirus.
T17 1508-1697 Sentence denotes These findings provide the basis for starting further studies on the pathogenesis, and optimizing the design of diagnostic, antiviral and vaccination strategies for this emerging infection.
T18 1699-1711 Sentence denotes Introduction
T19 1712-1876 Sentence denotes Coronaviruses (CoVs) are enveloped, positive-sense, single-stranded RNA viruses that belong to the subfamily Coronavirinae, family Coronavirdiae, order Nidovirales.
T20 1877-2022 Sentence denotes There are four genera of CoVs, namely, Alphacoronavirus (αCoV), Betacoronavirus (βCoV), Deltacoronavirus (δCoV), and Gammacoronavirus (γCoV) [1].
T21 2023-2189 Sentence denotes Evolutionary analyses have shown that bats and rodents are the gene sources of most αCoVs and βCoVs, while avian species are the gene sources of most δCoVs and γCoVs.
T22 2190-2287 Sentence denotes CoVs have repeatedly crossed species barriers and some have emerged as important human pathogens.
T23 2288-2613 Sentence denotes The best-known examples include severe acute respiratory syndrome CoV (SARS-CoV) which emerged in China in 2002–2003 to cause a large-scale epidemic with about 8000 infections and 800 deaths, and Middle East respiratory syndrome CoV (MERS-CoV) which has caused a persistent epidemic in the Arabian Peninsula since 2012 [2,3].
T24 2614-2913 Sentence denotes In both of these epidemics, these viruses have likely originated from bats and then jumped into another amplification mammalian host [the Himalayan palm civet (Paguma larvata) for SARS-CoV and the dromedary camel (Camelus dromedarius) for MERS-CoV] before crossing species barriers to infect humans.
T25 2914-3120 Sentence denotes Prior to December 2019, 6 CoVs were known to infect human, including 2 αCoV (HCoV-229E and HKU-NL63) and 4 βCoV (HCoV-OC43 [lineage A], HCoV-HKU1 [lineage A], SARS-CoV [lineage B] and MERS-CoV [lineage C]).
T26 3121-3341 Sentence denotes The βCoV lineage A HCoV-OC43 and HCoV-HKU1 usually cause self-limiting upper respiratory infections in immunocompetent hosts and occasionally lower respiratory tract infections in immunocompromised hosts and elderly [4].
T27 3342-3760 Sentence denotes In contrast, SARS-CoV (lineage B βCoV) and MERS-CoV (lineage C βCoV) may cause severe lower respiratory tract infection with acute respiratory distress syndrome and extrapulmonary manifestations, such as diarrhea, lymphopenia, deranged liver and renal function tests, and multiorgan dysfunction syndrome, among both immunocompetent and immunocompromised hosts with mortality rates of ∼10% and ∼35%, respectively [5,6].
T28 3761-3911 Sentence denotes On 31 December 2019, the World Health Organization (WHO) was informed of cases of pneumonia of unknown cause in Wuhan City, Hubei Province, China [7].
T29 3912-3998 Sentence denotes Subsequent virological testing showed that a novel CoV was detected in these patients.
T30 3999-4168 Sentence denotes As of 16 January 2020, 43 patients have been diagnosed to have infection with this novel CoV, including two exported cases of mild pneumonia in Thailand and Japan [8,9].
T31 4169-4229 Sentence denotes The earliest date of symptom onset was 1 December 2019 [10].
T32 4230-4315 Sentence denotes The symptomatology of these patients included fever, malaise, dry cough, and dyspnea.
T33 4316-4428 Sentence denotes Among 41 patients admitted to a designated hospital in Wuhan, 13 (32%) required intensive care and 6 (15%) died.
T34 4429-4526 Sentence denotes All 41 patients had pneumonia with abnormal findings on chest computerized tomography scans [10].
T35 4527-4645 Sentence denotes We recently reported a familial cluster of 2019-nCoV infection in a Shenzhen family with travel history to Wuhan [11].
T36 4646-4868 Sentence denotes In the present study, we analyzed a 2019-nCoV complete genome from a patient in this familial cluster and compared it with the genomes of related β CoVs to provide insights into the potential source and control strategies.
T37 4870-4891 Sentence denotes Materials and methods
T38 4893-4908 Sentence denotes Viral sequences
T39 4909-5002 Sentence denotes The complete genome sequence of 2019-nCoV HKU-SZ-005b was available at GenBank (accession no.
T40 5003-5023 Sentence denotes MN975262) (Table 1).
T41 5024-5162 Sentence denotes The representative complete genomes of other related βCoVs strains collected from human or mammals were included for comparative analysis.
T42 5163-5311 Sentence denotes These included strains collected from human, bats, and Himalayan palm civet between 2003 and 2018, with one 229E coronavirus strain as the outgroup.
T43 5312-5320 Sentence denotes Table 1.
T44 5321-5362 Sentence denotes List of coronaviruses used in this study.
T45 5363-5438 Sentence denotes Accession number Name displayed on the tree Name of full-length genome Year
T46 5439-5515 Sentence denotes AY274119 Human SARS-CoV Tor2 2003 SARS-related coronavirus isolate Tor2 2003
T47 5516-5576 Sentence denotes AY278488 Human SARS-CoV BJ01 2003 SARS coronavirus BJ01 2003
T48 5577-5654 Sentence denotes AY278491 SARS coronavirus HKU-39849 2003 SARS coronavirus HKU-39849 2003 2003
T49 5655-5715 Sentence denotes AY390556 Human SARS-CoV GZ02 2003 SARS coronavirus GZ02 2003
T50 5716-5772 Sentence denotes AY391777 Human CoV OC43 2003 Human coronavirus OC43 2003
T51 5773-5862 Sentence denotes AY515512 Paguma SARS CoV HC/SZ/61/03 2003 SARS coronavirus HC/SZ/61/03 (paguma SARS) 2018
T52 5863-5919 Sentence denotes EF065513 Bat CoV HKU9-1 2006 Bat coronavirus HKU9-1 2006
T53 5920-5979 Sentence denotes FJ588686 Bat SL-CoV Rs672 2006 Bat SARS CoV Rs672/2006 2006
T54 5980-6053 Sentence denotes KC881005 Bat SL-CoV RsSHC014 2013 Bat SARS-like coronavirus RsSHC014 2013
T55 6054-6123 Sentence denotes KC881006 Bat SL-CoV Rs3367 2013 Bat SARS-like coronavirus Rs3367 2013
T56 6124-6201 Sentence denotes KY417146 Bat SL-CoV Rs4231 2016 Bat SARS-like coronavirus isolate Rs4231 2016
T57 6202-6279 Sentence denotes KY417149 Bat SL-CoV Rs4255 2016 Bat SARS-like coronavirus isolate Rs4255 2016
T58 6280-6363 Sentence denotes MG772933 Bat SL-CoV ZC45 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZC45 2018
T59 6364-6449 Sentence denotes MG772934 Bat SL-CoV ZXC21 2018 Bat SARS-like coronavirus isolate bat-SL-CoVZXC21 2018
T60 6450-6517 Sentence denotes MK211377 Bat CoV YN2018C 2018 Coronavirus BtRs-BetaCoV/YN2018C 2018
T61 6518-6586 Sentence denotes MK211378 Bat CoV YN2018D 2018 Coronavirus BtRs-BetaCoV/YN2018Da 2018
T62 6587-6640 Sentence denotes MN975262 HKU-SZ-005b Human 2019-nCoV HKU-SZ-005b 2020
T63 6641-6697 Sentence denotes NC002645 Human CoV 229E 2000 Human coronavirus 229E 2000
T64 6698-6754 Sentence denotes NC006577 Human CoV HKU1 2004 Human coronavirus HKU1 2004
T65 6755-6811 Sentence denotes NC009019 Bat CoV HKU4-1 2006 Bat coronavirus HKU4-1 2006
T66 6812-6868 Sentence denotes NC009020 Bat CoV HKU5-1 2006 Bat coronavirus HKU5-1 2006
T67 6869-6949 Sentence denotes NC014470 Bat SARS-related CoV BM48-31 2009 Bat coronavirus BM48-31/BGR/2008 2008
T68 6950-7028 Sentence denotes NC019843 Human MERS-CoV 2012 Middle East respiratory syndrome coronavirus 2012
T69 7029-7103 Sentence denotes aOne nucleotide was added within M gene to maintain the sequence in-frame.
T70 7105-7154 Sentence denotes Genome characterization and phylogenetic analysis
T71 7155-7315 Sentence denotes Phylogenetic tree construction by the neighbour joining method was performed using MEGA X software, with bootstrap values being calculated from 1000 trees [12].
T72 7316-7474 Sentence denotes The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) was shown next to the branches [13].
T73 7475-7617 Sentence denotes The tree was drawn to scale, with branch lengths in the same units as those of the evolutionary distances used to infer the phylogenetic tree.
T74 7618-7773 Sentence denotes The evolutionary distances were computed using the Poisson correction method and were in the units of the number of amino acid substitutions per site [14].
T75 7774-7861 Sentence denotes All ambiguous positions were removed for each sequence pair (pairwise deletion option).
T76 7862-7914 Sentence denotes Evolutionary analyses were conducted in MEGA X [15].
T77 7915-8009 Sentence denotes Multiple alignment was performed using CLUSTAL 2.1 and further visualized using BOXSHADE 3.21.
T78 8010-8120 Sentence denotes Structural analysis of orf8 was performed using PSI-blast-based secondary structure PREDiction (PSIPRED) [16].
T79 8121-8315 Sentence denotes For the prediction of protein secondary structure including beta sheet, alpha helix, and coil, initial amino acid sequences were input and analysed using neural networking and its own algorithm.
T80 8316-8395 Sentence denotes Predicted structures were visualized and highlighted on the BOXSHADE alignment.
T81 8396-8513 Sentence denotes Prediction of transmembrane domains was performed using the TMHMM 2.0 server (http://www.cbs.dtu.dk/services/TMHMM/).
T82 8514-8787 Sentence denotes Secondary structure prediction in the 5′-untranslated region (UTR) and 3′-UTR was performed using the RNAfold WebServer (http://rna.tbi.univie.ac.at/cgi-bin/RNAWebSuite/RNAfold.cgi) with minimum free energy (MFE) and partition function in Fold algorithms and basic options.
T83 8788-8880 Sentence denotes The human SARS-CoV 5′- and 3′- UTR were used as references to adjust the prediction results.
T84 8882-8904 Sentence denotes Results and discussion
T85 8906-8925 Sentence denotes Genome organization
T86 8926-9031 Sentence denotes The single-stranded RNA genome of the 2019-nCoV was 29891 nucleotides in size, encoding 9860 amino acids.
T87 9032-9058 Sentence denotes The G + C content was 38%.
T88 9059-9214 Sentence denotes Similar to other βCoVs, the 2019-nCoV genome contains two flanking untranslated regions (UTRs) and a single long open reading frame encoding a polyprotein.
T89 9215-9472 Sentence denotes The 2019-nCoV genome is arranged in the order of 5′-replicase (orf1/ab)-structural proteins [Spike (S)-Envelope (E)-Membrane (M)-Nucleocapsid (N)]−3′ and lacks the hemagglutinin-esterase gene which is characteristically found in lineage A β-CoVs (Figure 1).
T90 9473-9482 Sentence denotes Figure 1.
T91 9483-9519 Sentence denotes Betacoronavirus genome organization.
T92 9520-9972 Sentence denotes The betacoronavirus genome comprises of the 5'-untranslated region (5'-UTR), open reading frame (orf) 1a/b (yellow box) encoding non-structural proteins (nsp) for replication, structural proteins including spike (blue box), envelop (orange box), membrane (red box), and nucleocapsid (cyan box) proteins, accessory proteins (purple boxes) such as orf 3, 6, 7a, 7b, 8 and 9b in the 2019-nCoV (HKU-SZ-005b) genome, and the 3'-untranslated region (3'-UTR).
T93 9973-10211 Sentence denotes Examples of lineages A to D betacoronaviruses include human coronavirus (HCoV) HKU1 (lineage A), 2019-nCoV (HKU-SZ-005b) and SARS-CoV (lineage B), MERS-CoV and Tylonycteris bat CoV HKU4 (lineage C), and Rousettus bat CoV HKU9 (lineage D).
T94 10212-10263 Sentence denotes The length of nsps and orfs are not drawn in scale.
T95 10264-10501 Sentence denotes There are 12 putative, functional open reading frames (orfs) expressed from a nested set of 9 subgenomic mRNAs carrying a conserved leader sequence in the genome, 9 transcription-regulatory sequences, and 2 terminal untranslated regions.
T96 10502-10569 Sentence denotes The 5′- and 3′-UTRs are 265 and 358 nucleotides long, respectively.
T97 10570-10686 Sentence denotes The 5′- and 3 ′-UTR sequences of 2019-nCoV are similar to those of other βCoVs with nucleotide identities of ⩾83.6%.
T98 10687-10902 Sentence denotes The large replicase polyproteins pp1a and pp1ab encoded by the partially overlapping 5′-terminal orf1a/b within the 5′ two-thirds of the genome is proteolytic cleaved into 16 putative non-structural proteins (nsps).
T99 10903-11219 Sentence denotes These putative nsps included two viral cysteine proteases, namely, nsp3 (papain-like protease) and nsp5 (chymotrypsin-like, 3C-like, or main protease), nsp12 (RNA-dependent RNA polymerase [RdRp]), nsp13 (helicase), and other nsps which are likely involved in the transcription and replication of the virus (Table 2).
T100 11220-11328 Sentence denotes There are no remarkable differences between the orfs and nsps of 2019-nCoV with those of SARS-CoV (Table 3).
T101 11329-11513 Sentence denotes The major distinction between SARSr-CoV and SARS-CoV is in orf3b, Spike and orf8 but especially variable in Spike S1 and orf8 which were previously shown to be recombination hot spots.
T102 11514-11522 Sentence denotes Table 2.
T103 11523-11644 Sentence denotes Putative functions and proteolytic cleavage sites of 16 nonstructural proteins in orf1a/b as predicted by bioinformatics.
T104 11645-11714 Sentence denotes NSP Putative function/domain Amino acid position Putative cleave site
T105 11715-11774 Sentence denotes nsp1 suppress antiviral host response M1 – G180 (LNGG'AYTR)
T106 11775-11811 Sentence denotes nsp2 unknown A181 – G818 (LKGG'APTK)
T107 11812-11864 Sentence denotes nsp3 putative PL-pro domain A819 – G2763 (LKGG'KIVN)
T108 11865-11934 Sentence denotes nsp4 complex with nsp3 and 6: DMV formation K2764 – Q3263 (AVLQ'SGFR)
T109 11935-11980 Sentence denotes nsp5 3CL-pro domain S3264 – Q3569 (VTFQ'SAVK)
T110 11981-12050 Sentence denotes nsp6 complex with nsp3 and 4: DMV formation S3570 – Q3859 (ATVQ'SKMS)
T111 12051-12108 Sentence denotes nsp7 complex with nsp8: primase S3860 – Q3942 (ATLQ'AIAS)
T112 12109-12166 Sentence denotes nsp8 complex with nsp7: primase A3943 – Q4140 (VKLQ'NNEL)
T113 12167-12222 Sentence denotes nsp9 RNA/DNA binding activity N4141 – Q4253 (VRLQ'AGNA)
T114 12223-12295 Sentence denotes nsp10 complex with nsp14: replication fidelity A4254 – Q4392 (PMLQ'SADA)
T115 12296-12364 Sentence denotes nsp11 short peptide at the end of orf1a S4393 – V4405 (end of orf1a)
T116 12365-12425 Sentence denotes nsp12 RNA-dependent RNA polymerase S4393 – Q5324 (TVLQ'AVGA)
T117 12426-12466 Sentence denotes nsp13 helicase A5325 – Q5925 (ATLQ'AENV)
T118 12467-12478 Sentence denotes nsp14 ExoN:
T119 12479-12522 Sentence denotes 3′–5′ exonuclease A5926 – Q6452 (TRLQ'SLEN)
T120 12523-12596 Sentence denotes nsp15 XendoU: poly(U)-specific endoribonuclease S6453 – Q6798 (PKLQ'SSQA)
T121 12597-12611 Sentence denotes nsp16 2'-O-MT:
T122 12612-12670 Sentence denotes 2'-O-ribose methyltransferase S6799 – N7096 (end of orf1b)
T123 12671-12679 Sentence denotes Table 3.
T124 12680-12783 Sentence denotes Amino acid identity between the 2019 novel coronavirus and bat SARS-like coronavirus or human SARS-CoV.
T125 12784-12827 Sentence denotes Amino acid identity (%) 2019-nCoV 2019-nCoV
T126 12828-12862 Sentence denotes   vs. bat-SL-CoVZXC21 vs. SARS-CoV
T127 12863-12873 Sentence denotes NSP1 96 84
T128 12874-12884 Sentence denotes NSP2 96 68
T129 12885-12895 Sentence denotes NSP3 93 76
T130 12896-12906 Sentence denotes NSP4 96 80
T131 12907-12917 Sentence denotes NSP5 99 96
T132 12918-12928 Sentence denotes NSP6 98 88
T133 12929-12939 Sentence denotes NSP7 99 99
T134 12940-12950 Sentence denotes NSP8 96 97
T135 12951-12961 Sentence denotes NSP9 96 97
T136 12962-12973 Sentence denotes NSP10 98 97
T137 12974-12985 Sentence denotes NSP11 85 85
T138 12986-12997 Sentence denotes NSP12 96 96
T139 12998-13010 Sentence denotes NSP13 99 100
T140 13011-13022 Sentence denotes NSP14 95 95
T141 13023-13034 Sentence denotes NSP15 88 89
T142 13035-13046 Sentence denotes NSP16 98 93
T143 13047-13058 Sentence denotes Spike 80 76
T144 13059-13070 Sentence denotes Orf3a 92 72
T145 13071-13082 Sentence denotes Orf3b 32 32
T146 13083-13098 Sentence denotes Envelope 100 95
T147 13099-13113 Sentence denotes Membrane 99 91
T148 13114-13124 Sentence denotes Orf6 94 69
T149 13125-13136 Sentence denotes Orf7a 89 85
T150 13137-13148 Sentence denotes Orf7b 93 81
T151 13149-13165 Sentence denotes Orf8/Orf8b 94 40
T152 13166-13185 Sentence denotes Nucleoprotein 94 94
T153 13186-13197 Sentence denotes Orf9b 73 73
T154 13199-13204 Sentence denotes Spike
T155 13205-13256 Sentence denotes Spike glycoprotein comprised of S1 and S2 subunits.
T156 13257-13517 Sentence denotes The S1 subunit contains a signal peptide, followed by an N-terminal domain (NTD) and receptor-binding domain (RBD), while the S2 subunit contains conserved fusion peptide (FP), heptad repeat (HR) 1 and 2, transmembrane domain (TM), and cytoplasmic domain (CP).
T157 13518-13699 Sentence denotes We found that the S2 subunit of 2019-nCoV is highly conserved and shares 99% identity with those of the two bat SARS-like CoVs (SL-CoV ZXC21 and ZC45) and human SARS-CoV (Figure 2).
T158 13700-13867 Sentence denotes Thus the broad spectrum antiviral peptides against S2 would be an important preventive and treatment modality for testing in animal models before clinical trials [18].
T159 13868-14095 Sentence denotes Though the S1 subunit of 2019-nCoV shares around 70% identity to that of the two bat SARS-like CoVs and human SARS-CoV (Figure 3(A)), the core domain of RBD (excluding the external subdomain) are highly conserved (Figure 3(B)).
T160 14096-14248 Sentence denotes Most of the amino acid differences of RBD are located in the external subdomain, which is responsible for the direct interaction with the host receptor.
T161 14249-14397 Sentence denotes Further investigation of this soluble variable external subdomain region will reveal its receptor usage, interspecies transmission and pathogenesis.
T162 14398-14578 Sentence denotes Unlike 2019-nCoV and human SARS-CoV, most known bat SARSr-CoVs have two stretches of deletions in the spike receptor binding domain (RBD) when compared with that of human SARS-CoV.
T163 14579-14694 Sentence denotes But some Yunnan strains such as the WIV1 had no such deletions and can use human ACE2 as a cellular entry receptor.
T164 14695-14921 Sentence denotes It is interesting to note that the two bat SARS-related coronavirus ZXC21 and ZC45, being closest to 2019-nCoV, can infect suckling rats and cause inflammation in the brain tissue, and pathological changes in lung & intestine.
T165 14922-15022 Sentence denotes However, these two viruses could not be isolated in Vero E6 cells and were not investigated further.
T166 15023-15180 Sentence denotes The two retained deletion sites in the Spike genes of ZXC21 and ZC45 may lessen their likelihood of jumping species barriers imposed by receptor specificity.
T167 15181-15190 Sentence denotes Figure 2.
T168 15191-15249 Sentence denotes Comparison of protein sequences of Spike stalk S2 subunit.
T169 15250-15618 Sentence denotes Multiple alignment of Spike S2 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21 and bat-SL-CoVZXC45 (accession number MG772934.1 and MG772933.1, respectively) and human SARS coronavirus (accession number NC004718) was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21 respectively.
T170 15619-15737 Sentence denotes The black boxes represent the identity while the grey boxes represent the similarity of the four amino acid sequences.
T171 15738-15747 Sentence denotes Figure 3.
T172 15748-15785 Sentence denotes Comparison of protein sequences of A.
T173 15786-15816 Sentence denotes Spike globular head S1, and B.
T174 15817-15858 Sentence denotes S1 receptor-binding domain (RBD) subunit.
T175 15859-16408 Sentence denotes Multiple alignment of Spike S1 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21, bat-SL-CoVZXC45, bat-SL-CoV-YNLF_31C, bat-SL-CoV-YNLF_34C and bat SL-CoV HKU3-1 (accession number MG772934.1 and MG772933.1, KP886808, KP886809 and DQ022305, respectively), human SARS coronavirus GZ02 and Tor2 (accession number AY390556 and AY274119, respectively) and Paguma SARS-CoV (accession number AY515512) was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21, respectively.
T176 16409-16534 Sentence denotes The black background represents the identity while the grey background represents the similarity of the amino acid sequences.
T177 16535-16679 Sentence denotes Orange box indicates the region of signal peptide, while green and blue boxes indicate the core domain and receptor binding domain respectively.
T178 16680-16742 Sentence denotes Sequences of RBD, highlighted in (A) were used for comparison.
T179 16743-16895 Sentence denotes External subdomain variable region of 2019-nCoV HKU-SZ-005b was predicted by comparison of amino acid similarity and published structural analysis [17].
T180 16896-16947 Sentence denotes Purple box indicates the external subdomain region.
T181 16949-16954 Sentence denotes Orf3b
T182 16955-17094 Sentence denotes A novel short putative protein with 4 helices and no homology to existing SARS-CoV or SARS-r-CoV protein was found within Orf3b (Figure 4).
T183 17095-17306 Sentence denotes It is notable that SARS-CoV deletion mutants lacking orf3b replicate to levels similar to those of wild-type virus in several cell types [19], suggesting that orf3b is dispensable for viral replication in vitro.
T184 17307-17562 Sentence denotes But orf3b may have a role in viral pathogenicity as Vero E6 but not 293T cells transfected with a construct expressing Orf3b underwent necrosis as early as 6 h after transfection and underwent simultaneous necrosis and apoptosis at later time points [20].
T185 17563-17648 Sentence denotes Orf3b was also shown to inhibit expression of IFN-β at synthesis and signalling [21].
T186 17649-17830 Sentence denotes Subsequently, orf3b homologues identified from three bat SARS-related-CoV strains were C-terminally truncated and lacked the C-terminal nucleus localization signal of SARS-CoV [22].
T187 17831-17971 Sentence denotes IFN antagonist activity analysis demonstrated that one SARS-related-CoV orf3b still possessed IFN antagonist and IRF3-modulating activities.
T188 17972-18231 Sentence denotes These results indicated that different orf3b proteins display different IFN antagonist activities and this function is independent of the protein's nuclear localization, suggesting a potential link between bat SARS-related-CoV orf3b function and pathogenesis.
T189 18232-18322 Sentence denotes The importance of this new protein in 2019-nCoV will require further validation and study.
T190 18323-18332 Sentence denotes Figure 4.
T191 18333-18351 Sentence denotes Analysis of orf3b.
T192 18352-18354 Sentence denotes A.
T193 18355-18463 Sentence denotes Multiple alignment of orf3b protein sequence between 2019-nCoV (HKU-SZ-005b), SARS-CoV and SARS-related CoV.
T194 18464-18466 Sentence denotes B.
T195 18467-18513 Sentence denotes A novel putative short protein found in orf3b.
T196 18515-18519 Sentence denotes Orf8
T197 18520-18602 Sentence denotes orf8 is an accessory protein found in the Betacoronavirus lineage B coronaviruses.
T198 18603-18738 Sentence denotes Human SARS-CoVs isolated from early-phase patients, all civet SARS-CoVs, and other bat SARS-related CoVs contain full-length orf8 [23].
T199 18739-18937 Sentence denotes However, a 29-nucleotide deletion, which causes the split of full length of orf8 into putative orf8a and orf8b, has been found in all SARS-CoV isolated from mid- and late- phase human patients [24].
T200 18938-19148 Sentence denotes In addition, we have previously identified two bat SARS-related-CoV (Bat-CoV YNLF_31C and YNLF_34C) and proposed that the original SARS-CoV full-length orf8 is acquired from these two bat SARS-related-CoV [25].
T201 19149-19328 Sentence denotes Since the SARS-CoV is the closest human pathogenic virus to the 2019-nCoV, we performed phylogenetic analysis and multiple alignments to investigate the orf8 amino acid sequences.
T202 19329-19808 Sentence denotes The orf8 protein sequences used in the analysis derived from early phase SARS-CoV that includes full-length orf8 (human SARS-CoV GZ02), the mid- and late-phase SARS-CoV that includes the split orf8b (human SARS-CoV Tor2), civet SARS-CoV (paguma SARS-CoV), two bat SARS-related-CoV containing full-length orf8 (bat-CoV YNLF_31C and YNLF_34C), 2019-nCoV, the other two closest bat SARS-related-CoV to 2019-nCoV SL-CoV ZXC21 and ZC45), and bat SARS-related-CoV HKU3-1 (Figure 5(A)).
T203 19809-19953 Sentence denotes As expected, orf8 derived from 2019-nCoV belongs to the group that includes the closest genome sequences of bat SARS-related-CoV ZXC21 and ZC45.
T204 19954-20164 Sentence denotes Interestingly, the new 2019-nCoV orf8 is distant from the conserved orf8 or orf8b derived from human SARS-CoV or its related viruses derived from civet (paguma SARS-CoV) and bat (bat-CoV YNLF_31C and YNLF_34C).
T205 20165-20242 Sentence denotes This new orf8 of 2019-nCoV does not contain known functional domain or motif.
T206 20243-20484 Sentence denotes An aggregation motif VLVVL (amino acid 75–79) has been found in SARS-CoV orf8b (Figure 5(B)) which was shown to trigger intracellular stress pathways and activates NLRP3 inflammasomes [26], but this is absent in this novel orf8 of 2019-nCoV.
T207 20485-20674 Sentence denotes Based on a secondary structure prediction, this novel orf8 has a high possibility to form a protein with an alpha-helix, following with a beta-sheet(s) containing six strands (Figure 5(C)).
T208 20675-20684 Sentence denotes Figure 5.
T209 20685-21097 Sentence denotes Analysis of orf8 to show novel putative protein. (A) Phylogenetic analysis of orf8 amino acid sequences of 2019-nCoV HKU-SZ-005b (accession number MN975262), bat SARS-like coronavirus isolates bat-SL-CoVZXC21 and bat-SL-CoVZXC45 (accession number MG772934.1 and MG772933.1, respectively) and human SARS coronavirus (accession number AY274119) was performed using the neighbour-joining method with bootstrap 1000.
T210 21098-21277 Sentence denotes The evolutionary distances were calculated using the JTT matrix-based method. (B) Multiple alignment was performed and displayed using CLUSTAL 2.1 and BOXSHADE 3.21, respectively.
T211 21278-21513 Sentence denotes The black background represents the identity while the grey background represents the similarity of the amino acid sequences. (C) Structural analysis of Orf8 was performed using PSI-blast-based secondary structure PREDiction (PSIPRED).
T212 21514-21603 Sentence denotes Predicted helix structure (h) and strand (s) were boxed with red and yellow respectively.
T213 21605-21662 Sentence denotes Phylogenetic relationship among 2019-nCoV and other βCoVs
T214 21663-21859 Sentence denotes The genome of 2019-nCoV has overall 89% nucleotide identity with bat SARS-related-CoV SL-CoVZXC21 (MG772934.1), and 82% with human SARS-CoV BJ01 2003 (AY278488) and human SARS-CoV Tor2 (AY274119).
T215 21860-22008 Sentence denotes The phylogenetic trees constructed using the amino acid sequences of orf1a/b and the 4 structural genes (S, E, M, and N) were shown (Figure 6(A–E)).
T216 22009-22081 Sentence denotes For all these 5 genes, the 2019-nCoV was clustered with lineage B βCoVs.
T217 22082-22284 Sentence denotes It was most closely related to the bat SARS-related CoVs ZXC21 and ZC45 found in Chinese horseshoe bats (Rhinolopus sinicus) collected from Zhoushan city, Zhejiang province, China between 2015 and 2017.
T218 22285-22425 Sentence denotes Thus this novel coronavirus should belong to the genus Betacoronavirus, subgenus Sabecovirus (previously lineage 2b of Group 2 coronavirus).
T219 22426-22539 Sentence denotes SARS-related coronaviruses have been found continuously especially in horseshoe bat species in the last 13 years.
T220 22540-22761 Sentence denotes Between 2003 and 2018, 339 complete SARS-related coronavirus genomes have been sequenced, including 274 human SARS-CoV, 18 civet SARS coronavirus, and 47 bat SARS-related coronaviruses mainly from Rhinolophus bat species.
T221 22762-22832 Sentence denotes Together, they formed a distinct subclade among other lineage B βCoVs.
T222 22833-22913 Sentence denotes These results suggested that the 2019-nCoV might have also originated from bats.
T223 22914-23114 Sentence denotes But we cannot ascertain whether another intermediate or amplification animal host infected by 2019-nCoV could be found in the epidemiological market, just as in the case of Paguma civets for SARS-CoV.
T224 23115-23124 Sentence denotes Figure 6.
T225 23125-23420 Sentence denotes Phylogenetic tree construction by the neighbour joining method was performed using MEGA X software, with bootstrap values being calculated from 1000 trees using amino acid sequences of (A) orf1ab polypeptide; (B) Spike glycoprotein; (C) Envelope protein; (D) Membrane protein; (E) Nucleoprotein.
T226 23422-23446 Sentence denotes RNA secondary structures
T227 23447-23563 Sentence denotes As shown in Figure 7(A–C), the SARS-CoV 5′-UTR contains SL1, SL2, SL3, SL4, S5, SL5A, SL5B, SL5C, SL6, SL7, and SL8.
T228 23564-23602 Sentence denotes The SL3 contains trans–cis motif [27].
T229 23603-23742 Sentence denotes The SL1, SL2, SL3, SL4, S5, SL5A, SL5B, and SL5C structures were similar among the 2019-nCoV, human SARS-CoV and the bat SARS-related ZC45.
T230 23743-23852 Sentence denotes In the 2019-nCoV, part of the S5 found was inside the orf1a/b (marked in red), which was similar to SARS-CoV.
T231 23853-23919 Sentence denotes In bat SARS-related CoV ZC45, the S5 was not found inside orf1a/b.
T232 23920-24006 Sentence denotes The 2019-nCoV had the same SL6, SL7, and SL8 as SARS-CoV, and an additional stem loop.
T233 24007-24078 Sentence denotes Bat SARS-related CoV ZC45 did not have the SARS-COV SL6-like stem loop.
T234 24079-24137 Sentence denotes Instead, it possessed two other stem loops in this region.
T235 24138-24180 Sentence denotes All three strains had similar SL7 and SL8.
T236 24181-24261 Sentence denotes The bat SARS-like CoV ZC45 also had an additional stem loop between SL7 and SL8.
T237 24262-24368 Sentence denotes Overall, the 5′-UTR of 2019-nCoV was more similar to that of SARS-CoV than the bat SARS-related CoV ZC 45.
T238 24369-24475 Sentence denotes The biological relevance and effects of virulence of the 5′-UTR structures should be investigated further.
T239 24476-24588 Sentence denotes The 2019-nCoV had various 3′-UTR structures, including BSL, S1, S2, S3, S4, L1, L2, L3, and HVR (Figure 7(D–F)).
T240 24589-24673 Sentence denotes The 3′-UTR was conserved among 2019-nCoV, human SARS-CoV and SARS-related CoVs [27].
T241 24674-24683 Sentence denotes Figure 7.
T242 24684-24891 Sentence denotes Secondary structure prediction and comparison in the 5′-untranslated region (UTR) and 3′-UTR using the RNAfold WebServer (with minimum free energy and partition function in Fold algorithms and basic options.
T243 24892-25121 Sentence denotes The SARS 5′- and 3′- UTR was used as a reference to adjust the prediction results.(A) SARS-CoV 5'-UTR; (B) 2019-nCoV (HKU-SZ-005b) 5'-UTR; (C) ZC45 5'-UTR; (D) SARS-CoV 3'-UTR; (E) 2019-nCoV (HKU-SZ-005b) 3'-UTR; (F) ZC45 3'-UTR.
T244 25122-25231 Sentence denotes In summary, 2019-nCoV is a novel lineage B Betacoronavirus closely related to bat SARS-related coronaviruses.
T245 25232-25374 Sentence denotes It also has unique genomic features which deserves further investigation to ascertain their roles in viral replication cycle and pathogenesis.
T246 25375-25494 Sentence denotes More animal sampling to determine its natural animal reservoir and intermediate animal host in the market is important.
T247 25495-25671 Sentence denotes This will shed light on the evolutionary history of this emerging coronavirus which has jumped into human after the other two zoonotic Betacoroanviruses, SARS-CoV and MERS-CoV.
T248 25673-25689 Sentence denotes Acknowledgements
T249 25690-25811 Sentence denotes The funding sources had no role in the study design, data collection, analysis, interpretation, or writing of the report.
T250 25813-25833 Sentence denotes Disclosure statement
T251 25834-25898 Sentence denotes No potential conflict of interest was reported by the author(s).
T252 25900-25905 Sentence denotes ORCID
T253 25906-25962 Sentence denotes Jasper Fuk-Woo Chan http://orcid.org/0000-0001-6336-6657
T254 25963-26012 Sentence denotes Kin-Hang Kok http://orcid.org/0000-0003-3426-332X

2_test

Id Subject Object Predicate Lexical cue
31987001-23770275-27754475 2019-2020 23770275 denotes 1
31987001-17934078-27754476 2608-2609 17934078 denotes 2
31987001-25810418-27754477 2610-2611 25810418 denotes 3
31987001-15613317-27754478 3338-3339 15613317 denotes 4
31987001-12711465-27754479 3755-3756 12711465 denotes 5
31987001-27572168-27754480 3757-3758 27572168 denotes 6
31987001-3447015-27754481 7311-7313 3447015 denotes 12
31987001-28561359-27754482 7470-7472 28561359 denotes 13
31987001-29722887-27754483 7910-7912 29722887 denotes 15
31987001-31251384-27754484 8116-8118 31251384 denotes 16
31987001-30989115-27754485 13863-13865 30989115 denotes 18
31987001-25211075-27754486 16891-16893 25211075 denotes 17
31987001-16282490-27754487 17233-17235 16282490 denotes 19
31987001-16965829-27754488 17558-17560 16965829 denotes 20
31987001-17108024-27754489 17644-17646 17108024 denotes 21
31987001-22012463-27754490 17826-17828 22012463 denotes 22
31987001-15695582-27754491 18734-18736 15695582 denotes 23
31987001-17928347-27754492 18933-18935 17928347 denotes 24
31987001-26269185-27754493 19144-19146 26269185 denotes 25
31987001-31231549-27754494 20428-20430 31231549 denotes 26
31987001-25736566-27754495 23598-23600 25736566 denotes 27
31987001-25736566-27754496 24669-24671 25736566 denotes 27

MyTest

Id Subject Object Predicate Lexical cue
31987001-23770275-27754475 2019-2020 23770275 denotes 1
31987001-17934078-27754476 2608-2609 17934078 denotes 2
31987001-25810418-27754477 2610-2611 25810418 denotes 3
31987001-15613317-27754478 3338-3339 15613317 denotes 4
31987001-12711465-27754479 3755-3756 12711465 denotes 5
31987001-27572168-27754480 3757-3758 27572168 denotes 6
31987001-3447015-27754481 7311-7313 3447015 denotes 12
31987001-28561359-27754482 7470-7472 28561359 denotes 13
31987001-29722887-27754483 7910-7912 29722887 denotes 15
31987001-31251384-27754484 8116-8118 31251384 denotes 16
31987001-30989115-27754485 13863-13865 30989115 denotes 18
31987001-25211075-27754486 16891-16893 25211075 denotes 17
31987001-16282490-27754487 17233-17235 16282490 denotes 19
31987001-16965829-27754488 17558-17560 16965829 denotes 20
31987001-17108024-27754489 17644-17646 17108024 denotes 21
31987001-22012463-27754490 17826-17828 22012463 denotes 22
31987001-15695582-27754491 18734-18736 15695582 denotes 23
31987001-17928347-27754492 18933-18935 17928347 denotes 24
31987001-26269185-27754493 19144-19146 26269185 denotes 25
31987001-31231549-27754494 20428-20430 31231549 denotes 26
31987001-25736566-27754495 23598-23600 25736566 denotes 27
31987001-25736566-27754496 24669-24671 25736566 denotes 27