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PMC:7062829 / 8745-13679 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
135 54-60 Species denotes people Tax:9606
136 110-120 Species denotes MERS virus Tax:1335626
137 92-100 Disease denotes infected MESH:D007239
138 350-359 Disease denotes infection MESH:D007239
139 394-398 Disease denotes MERS MESH:D018352
140 488-492 Disease denotes MERS MESH:D018352
141 1103-1111 Disease denotes infected MESH:D007239
142 1146-1150 Disease denotes MERS MESH:D018352
143 1151-1160 Disease denotes infection MESH:D007239
144 1215-1224 Disease denotes infection MESH:D007239
145 1240-1260 Disease denotes nosocomial infection MESH:D003428
146 1287-1295 Disease denotes infected MESH:D007239
147 1366-1370 Disease denotes MERS MESH:D018352
162 1966-1974 Species denotes patients Tax:9606
163 2003-2010 Species denotes patient Tax:9606
164 2057-2064 Species denotes patient Tax:9606
165 1766-1774 Disease denotes infected MESH:D007239
166 1889-1898 Disease denotes infection MESH:D007239
167 1998-2002 Disease denotes MERS MESH:D018352
168 2052-2056 Disease denotes MERS MESH:D018352
169 2181-2185 Disease denotes MERS MESH:D018352
170 2334-2338 Disease denotes MERS MESH:D018352
171 2339-2349 Disease denotes infections MESH:D007239
172 2472-2481 Disease denotes infection MESH:D007239
173 3124-3133 Disease denotes infection MESH:D007239
174 3327-3336 Disease denotes infection MESH:D007239
175 3478-3504 Disease denotes visual displays of disease MESH:C531604
183 3635-3639 Disease denotes MERS MESH:D018352
184 4247-4251 Disease denotes MERS MESH:D018352
185 4252-4261 Disease denotes infection MESH:D007239
186 4346-4355 Disease denotes infection MESH:D007239
187 4657-4666 Disease denotes infection MESH:D007239
188 4799-4820 Disease denotes nosocomial infections MESH:D003428
189 4881-4900 Disease denotes infectious diseases MESH:D003141

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 350-359 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 977-987 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T33 1151-1160 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 1197-1224 Disease denotes hospital-acquired infection http://purl.obolibrary.org/obo/MONDO_0043544
T35 1215-1224 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 1240-1260 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T37 1251-1260 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 1889-1898 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 2339-2349 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T40 2472-2481 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 2587-2597 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T42 3106-3133 Disease denotes hospital-acquired infection http://purl.obolibrary.org/obo/MONDO_0043544
T43 3124-3133 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T44 3327-3336 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 4346-4355 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 4657-4666 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 4799-4820 Disease denotes nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T48 4881-4891 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T48 115-120 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T49 815-816 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 891-892 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 913-914 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 1009-1010 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 1032-1033 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 1162-1163 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T55 1195-1196 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 1262-1263 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57 1340-1341 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 1571-1572 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 2498-2499 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 2523-2524 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 2762-2763 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 2949-2950 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 3446-3448 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T64 3869-3870 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 4311-4312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 4453-4454 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 4600-4601 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 4730-4731 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 4908-4909 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 3446-3448 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T56 0-7 Sentence denotes Methods
T57 9-13 Sentence denotes Data
T58 14-162 Sentence denotes The dataset contains records of all 186 people, across 43 hospitals, who were infected with the MERS virus between May 20 and July 4, 2015 in Korea.
T59 163-268 Sentence denotes The data is publicly available on press mentions from the Korea Centers for Disease Control & Prevention.
T60 269-399 Sentence denotes The data includes diagnosis and reporting date, sex, age at diagnosis, source of infection, transmission route, and stage of MERS.
T61 400-499 Sentence denotes Scholarly papers in various journals and news media also provided current issues of the MERS event.
T62 500-584 Sentence denotes The use of multiple sources of evidence allows us to validate the research findings.
T63 585-733 Sentence denotes In this study, the contact patterns coming from Marquetoux et al.25 are established by tracing the relationship matrix of individuals and hospitals.
T64 734-814 Sentence denotes The data for the analysis contains two types of contacts: personal and hospital.
T65 815-875 Sentence denotes A personal contact is defined as the person-to-person route.
T66 876-928 Sentence denotes The format for a personal contact is a daily record.
T67 929-1161 Sentence denotes For every pair of individual hosts between whom infectious contacts occurred on a given date, there is a daily record including the source (infector) and target individuals (infected) presented with the spread of the MERS infection.
T68 1162-1261 Sentence denotes A hospital contact is defined as a hospital-acquired infection, also known as nosocomial infection.
T69 1262-1421 Sentence denotes A contact occurs when an infected individual visits healthcare facilities for a limited time period for MERS diagnosis, treatment, and follow-up visit records.
T70 1422-1557 Sentence denotes Each hospital contact corresponds to an actual visit of the individual hosts and includes the date on which the contact event occurred.
T71 1558-1629 Sentence denotes We construct a matrix of contact patterns of individuals and hospitals.
T72 1630-1804 Sentence denotes The number of observations for the personal contacts are 161(source: n) and 31(target: k), and those for the hospital contacts are 186 (infected host: n) and 43(hospital: k).
T73 1805-1931 Sentence denotes Among the 186 confirmed cases (including one case confirmed by China), the rates of infection were confirmed to be as follows:
T74 1932-2206 Sentence denotes 44.1% (82 cases) among in- or out-patients sharing wards with the MERS patient; 34.4% (64 cases) among the hospitalised MERS patient’s cohabiting family members or visitors; and 21.0% (39 cases) among the healthcare workers or staff employed at the MERS-affected hospital26.
T75 2207-2372 Sentence denotes Based on this data, we use an adjacency matrix to construct contact networks consisting of all recorded transmission routes of MERS infections from May 20 to July 4.
T76 2373-2545 Sentence denotes In the personal contact network, each pair of individuals, p, is examined to determine whether the infection was passed from a source individual i to a target individual j.
T77 2546-2678 Sentence denotes Thus, Rij:p is equal to 1 if there is an infectious contact between individuals i and j; the personal contact network is as follows:
T78 2679-2715 Sentence denotes Rp = 1 if Rij:p = 1 and 0 otherwise.
T79 2716-2929 Sentence denotes In the hospital contact network, we first use a two-mode incidence matrix to form individual host-by-hospital contact relations, in which Rij:h = 1 if individual host i visited hospital j, and Rij:h = 0 otherwise.
T80 2930-3101 Sentence denotes Next, we construct a bipartite graph consisting of the union of the individual hosts and hospitals as nodes with the edges only connecting individual hosts with hospitals.
T81 3102-3281 Sentence denotes For hospital-acquired infection, therefore, individual hosts are connected only by co-presence in hospitals, and hospitals are connected only by having individual hosts in common.
T82 3282-3429 Sentence denotes Thus, the exposed contacts through which the infection can spread are represented by the co-presence of two individual hosts in the same hospitals.
T83 3430-3582 Sentence denotes All the data in MS Excel, network measures, and visual displays of disease contact relations are produced using UCINET 627, Net-Draw28, and VOSviewer29.
T84 3584-3605 Sentence denotes Analytical techniques
T85 3606-3776 Sentence denotes This study examines the 2015 MERS outbreak in Korea using network analysis tools such as the indicators of centrality, egocentric network, core-periphery, and cut-points.
T86 3777-4010 Sentence denotes First, centrality pertains to the node’s (as unit of analysis: individual host) position in a network through specific analysis that is preoccupied with the degree, betweenness, closeness, and eigenvector of the geodesic distances30.
T87 4011-4264 Sentence denotes Then, the egocentric network is used to identify the topologies of the contact networks in which single individual hosts are bound with their neighbouring individual hosts to reveal the link between direct contact and the spread of the MERS infection31.
T88 4265-4443 Sentence denotes Furthermore, the core-periphery structures in a given network can reveal how the infection is transmitted locally or globally through the interaction of the core and periphery32.
T89 4444-4687 Sentence denotes Finally, a cut-point approach is used to identify the key hosts whose removal from the network would divide the network into un-connected parts, indicating a potential weakness in the network or disruption of the infection transmission flow33.
T90 4688-4934 Sentence denotes The comprehensive analysis can reveal how a disease contact network can be formed among individuals exposed to nosocomial infections, and the impact of the super-spreaders on the prevalence of infectious diseases within a relatively short period.

2_test

Id Subject Object Predicate Lexical cue
32152361-26883965-138518112 650-652 26883965 denotes 25
32152361-20585380-138518113 3579-3581 20585380 denotes 29