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PMC:7062829 / 18751-22667 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
218 69-73 Disease denotes MERS MESH:D018352
219 831-840 Disease denotes infection MESH:D007239
220 1054-1073 Disease denotes infectious diseases MESH:D003141
221 1155-1163 Disease denotes infected MESH:D007239
222 1373-1382 Disease denotes infection MESH:D007239
223 1505-1513 Disease denotes infected MESH:D007239
224 1767-1771 Disease denotes MERS MESH:D018352
225 1772-1781 Disease denotes infection MESH:D007239
232 2275-2279 Disease denotes MERS MESH:D018352
233 2385-2394 Disease denotes infection MESH:D007239
234 2436-2444 Disease denotes infected MESH:D007239
235 2463-2472 Disease denotes infection MESH:D007239
236 2686-2690 Disease denotes MERS MESH:D018352
237 2691-2701 Disease denotes infections MESH:D007239
239 3048-3052 Disease denotes MERS MESH:D018352
241 3696-3705 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T56 488-498 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T57 831-840 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 1054-1064 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T59 1230-1240 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T60 1373-1382 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T61 1541-1551 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T62 1725-1727 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T63 1772-1781 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 2205-2215 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T65 2385-2394 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T66 2416-2426 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T67 2463-2472 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T68 2691-2701 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T69 2880-2890 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T70 3696-3705 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T99 295-296 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 391-394 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T101 404-406 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T102 404-406 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T103 734-743 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 and #14
T104 1001-1002 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 1087-1089 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T106 1167-1168 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 1455-1456 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 1589-1592 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T109 1635-1636 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 1657-1658 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 1868-1869 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 2235-2236 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 2539-2540 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 2768-2769 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 2836-2845 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 and #14
T116 3112-3113 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 3527-3528 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 3557-3558 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T23 404-406 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T145 0-18 Sentence denotes Network centrality
T146 19-204 Sentence denotes We sought to investigate the degree centrality of MERS contact relations, because super-spreaders involved in disease transmission pathways are known for their role in disease dynamics.
T147 205-335 Sentence denotes The degree centrality describes the extent to which an individual host may be cohesive to a network of personal contact relations.
T148 336-633 Sentence denotes In the degree centrality results (Table 2), hosts #14 (M14) and #1 (M1) had higher percentages of out-degree links, indicating that they were in direct infectious contact with many other target hosts in the network, because each had more than 19% network centrality (46% for #14 and 19.3% for #1).
T149 634-699 Sentence denotes Most other hosts in the network had relatively fewer connections.
T150 700-893 Sentence denotes These direct contacts made hosts #1 and #14 more accessible to other hosts, generating several transmission chains that led to the infection of the susceptible target population in the network.
T151 894-1093 Sentence denotes This means that small fractions of highly connected ‘hub’ hosts acting as potential super-spreaders played a pertinent role in fueling and driving epidemics of infectious diseases (infectivity)36–39.
T152 1094-1428 Sentence denotes In other words, both host #1 (the index case: the first host infected in a chain of transmission) and host #14 (secondary case: typical infectious host) were well-characterised super-spreaders who held prominent structural advantage in facilitating continued transmission of the infection to susceptible hosts in their neighbourhoods.
T153 1429-1603 Sentence denotes By contrast, host #37 had a high in-degree and was more at risk of becoming infected through contact with other infectious individuals, followed by hosts #39, #162, and #179.
T154 1604-1798 Sentence denotes In other words, the more often a host was exposed to a potential threat by way of coming in contact, the more vulnerable he or she was to the risks leading to the MERS infection (vulnerability).
T155 1799-2039 Sentence denotes Regarding betweenness centrality, which measures the extent to which a particular individual host lies between other hosts in the network, the overall network centralization was very low at 0.35% of the purely centralized network (Table 2).
T156 2040-2126 Sentence denotes Thus, most contacts could be made in this network without the aid of any intermediary.
T157 2127-2343 Sentence denotes Despite this structural constraint, hosts #16 and #76, along with the typical infectious host #14, provided a spatial link or pathway through which MERS was transmitted from the source to the target host populations.
T158 2344-2573 Sentence denotes For instance, host #14, who acquired the infection through contact with infectious host #1, infected host #76, and the infection transmission continued to emerge through personal contacts within a population of susceptible hosts.
T159 2574-2702 Sentence denotes Without the tie to bridge hosts, therefore, other susceptible individuals might have been largely isolated from MERS infections.
T160 2703-2812 Sentence denotes The closeness centrality indicates the potential independence of a host from the relation of disease contact.
T161 2813-3108 Sentence denotes With closeness, hosts #1 and #14 had significant potential to make infectious contacts with the target host because of the shorter paths to transmission possibilities, thereby enabling the initial introduction and subsequent spread of MERS towards its target population with transitory contacts.
T162 3109-3198 Sentence denotes As a result, overall closeness centralization was higher than betweenness centralization.
T163 3199-3308 Sentence denotes This suggests that there were decentralized short-distance disease contact routes with centralised hub hosts.
T164 3309-3472 Sentence denotes However, no significant mediation was observed (47.2%: the distributions of in-and out-closenesses could not be computed because the network was weakly connected).
T165 3473-3586 Sentence denotes Finally, the eigenvector of geodesic distances offers a measure of the diversity of a personal contact’s network.
T166 3587-3916 Sentence denotes The results show that host #14 had the highest eigenvector centrality, indicating the consistent hub host of infection transmission in the personal contact network, which is more central to the main pattern of contact distances among all of the individual hosts (degree of inequality was 99.18% of the maximum possible; Table 2).

2_test

Id Subject Object Predicate Lexical cue
32152361-28153558-138518118 1087-1089 28153558 denotes 36
32152361-28193880-138518118 1087-1089 28193880 denotes 36
32152361-16292310-138518118 1087-1089 16292310 denotes 36