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PMC:7062829 / 1429-42222 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
17 314-319 Species denotes Ebola Tax:1570291
18 29-47 Disease denotes infectious disease MESH:D003141
19 281-291 Disease denotes infections MESH:D007239
20 301-305 Disease denotes SARS MESH:D045169
21 694-713 Disease denotes infectious diseases MESH:D003141
23 1338-1347 Disease denotes infection MESH:D007239
25 2179-2188 Disease denotes infection MESH:D007239
36 3320-3332 Disease denotes co-infection MESH:D060085
37 3629-3633 Disease denotes SARS MESH:D045169
38 3638-3642 Disease denotes MERS MESH:D018352
39 3817-3835 Disease denotes infectious disease MESH:D003141
40 3976-3984 Disease denotes infected MESH:D007239
41 4061-4071 Disease denotes infections MESH:D007239
42 4096-4100 Disease denotes SARS MESH:D045169
43 4105-4109 Disease denotes MERS MESH:D018352
44 4144-4153 Disease denotes infection MESH:D007239
45 4307-4316 Disease denotes infection MESH:D007239
71 4606-4611 Species denotes human Tax:9606
72 4615-4620 Species denotes human Tax:9606
73 4637-4653 Species denotes MERS-coronavirus Tax:1335626
74 4655-4658 Species denotes CoV Tax:11118
75 4712-4723 Species denotes coronavirus Tax:11118
76 5040-5046 Species denotes people Tax:9606
77 5193-5200 Species denotes patient Tax:9606
78 5271-5278 Species denotes patient Tax:9606
79 5426-5432 Species denotes people Tax:9606
80 5462-5469 Species denotes patient Tax:9606
81 5497-5505 Species denotes patients Tax:9606
82 5573-5580 Species denotes patient Tax:9606
83 5649-5656 Species denotes patient Tax:9606
84 5678-5686 Species denotes patients Tax:9606
85 4380-4412 Disease denotes Middle East Respiratory Syndrome MESH:D018352
86 4414-4418 Disease denotes MERS MESH:D018352
87 4678-4699 Disease denotes respiratory infection MESH:D012141
88 4856-4860 Disease denotes MERS MESH:D018352
89 5013-5017 Disease denotes MERS MESH:D018352
90 5084-5092 Disease denotes infected MESH:D007239
91 5300-5320 Disease denotes respiratory symptoms MESH:D012818
92 5388-5392 Disease denotes MERS MESH:D018352
93 5393-5402 Disease denotes infection MESH:D007239
94 5596-5600 Disease denotes MERS MESH:D018352
95 5792-5801 Disease denotes infection MESH:D007239
109 7271-7281 Species denotes MERS virus Tax:1335626
110 6912-6921 Chemical denotes bipartite
111 6008-6018 Disease denotes infections MESH:D007239
112 6085-6089 Disease denotes MERS MESH:D018352
113 6351-6355 Disease denotes MERS MESH:D018352
114 6356-6365 Disease denotes infection MESH:D007239
115 6498-6507 Disease denotes infection MESH:D007239
116 6568-6576 Disease denotes infected MESH:D007239
117 6842-6851 Disease denotes infection MESH:D007239
118 6863-6871 Disease denotes infected MESH:D007239
119 6945-6953 Disease denotes infected MESH:D007239
120 7073-7077 Disease denotes MERS MESH:D018352
121 7113-7131 Disease denotes infectious disease MESH:D003141
135 7370-7376 Species denotes people Tax:9606
136 7426-7436 Species denotes MERS virus Tax:1335626
137 7408-7416 Disease denotes infected MESH:D007239
138 7666-7675 Disease denotes infection MESH:D007239
139 7710-7714 Disease denotes MERS MESH:D018352
140 7804-7808 Disease denotes MERS MESH:D018352
141 8419-8427 Disease denotes infected MESH:D007239
142 8462-8466 Disease denotes MERS MESH:D018352
143 8467-8476 Disease denotes infection MESH:D007239
144 8531-8540 Disease denotes infection MESH:D007239
145 8556-8576 Disease denotes nosocomial infection MESH:D003428
146 8603-8611 Disease denotes infected MESH:D007239
147 8682-8686 Disease denotes MERS MESH:D018352
162 9282-9290 Species denotes patients Tax:9606
163 9319-9326 Species denotes patient Tax:9606
164 9373-9380 Species denotes patient Tax:9606
165 9082-9090 Disease denotes infected MESH:D007239
166 9205-9214 Disease denotes infection MESH:D007239
167 9314-9318 Disease denotes MERS MESH:D018352
168 9368-9372 Disease denotes MERS MESH:D018352
169 9497-9501 Disease denotes MERS MESH:D018352
170 9650-9654 Disease denotes MERS MESH:D018352
171 9655-9665 Disease denotes infections MESH:D007239
172 9788-9797 Disease denotes infection MESH:D007239
173 10440-10449 Disease denotes infection MESH:D007239
174 10643-10652 Disease denotes infection MESH:D007239
175 10794-10820 Disease denotes visual displays of disease MESH:C531604
183 10951-10955 Disease denotes MERS MESH:D018352
184 11563-11567 Disease denotes MERS MESH:D018352
185 11568-11577 Disease denotes infection MESH:D007239
186 11662-11671 Disease denotes infection MESH:D007239
187 11973-11982 Disease denotes infection MESH:D007239
188 12115-12136 Disease denotes nosocomial infections MESH:D003428
189 12197-12216 Disease denotes infectious diseases MESH:D003141
191 12505-12509 Disease denotes MERS MESH:D018352
197 14360-14364 Disease denotes MERS MESH:D018352
198 14365-14374 Disease denotes Infection MESH:D007239
199 14414-14423 Disease denotes infection MESH:D007239
200 14770-14774 Disease denotes MERS MESH:D018352
201 14775-14784 Disease denotes infection MESH:D007239
205 13748-13757 Disease denotes infection MESH:D007239
206 14093-14101 Disease denotes infected MESH:D007239
207 14225-14235 Disease denotes infections MESH:D007239
209 16404-16413 Disease denotes infection MESH:D007239
218 17391-17395 Disease denotes MERS MESH:D018352
219 18153-18162 Disease denotes infection MESH:D007239
220 18376-18395 Disease denotes infectious diseases MESH:D003141
221 18477-18485 Disease denotes infected MESH:D007239
222 18695-18704 Disease denotes infection MESH:D007239
223 18827-18835 Disease denotes infected MESH:D007239
224 19089-19093 Disease denotes MERS MESH:D018352
225 19094-19103 Disease denotes infection MESH:D007239
232 19597-19601 Disease denotes MERS MESH:D018352
233 19707-19716 Disease denotes infection MESH:D007239
234 19758-19766 Disease denotes infected MESH:D007239
235 19785-19794 Disease denotes infection MESH:D007239
236 20008-20012 Disease denotes MERS MESH:D018352
237 20013-20023 Disease denotes infections MESH:D007239
239 20370-20374 Disease denotes MERS MESH:D018352
241 21018-21027 Disease denotes infection MESH:D007239
246 21914-21924 Disease denotes infections MESH:D007239
247 22052-22061 Disease denotes infection MESH:D007239
248 22234-22238 Disease denotes MERS MESH:D018352
249 22239-22248 Disease denotes infection MESH:D007239
260 23080-23084 Disease denotes MERS MESH:D018352
261 23085-23094 Disease denotes infection MESH:D007239
262 23180-23189 Disease denotes infection MESH:D007239
263 23317-23326 Disease denotes infection MESH:D007239
264 23486-23495 Disease denotes infection MESH:D007239
265 23590-23594 Disease denotes MERS MESH:D018352
266 23595-23605 Disease denotes infections MESH:D007239
267 23646-23654 Disease denotes infected MESH:D007239
268 23862-23866 Disease denotes MERS MESH:D018352
269 23867-23876 Disease denotes infection MESH:D007239
272 24194-24203 Disease denotes infection MESH:D007239
273 24924-24938 Disease denotes MERS infection MESH:D018352
275 24960-24980 Disease denotes Nosocomial infection MESH:D003428
282 26414-26417 Gene denotes DDH Gene:1645
283 25842-25846 Disease denotes MERS MESH:D018352
284 25953-25967 Disease denotes MERS infection MESH:D018352
285 26080-26084 Disease denotes MERS MESH:D018352
286 26169-26173 Disease denotes MERS MESH:D018352
287 26225-26229 Disease denotes MERS MESH:D018352
298 25026-25034 Species denotes patients Tax:9606
299 25200-25210 Species denotes MERS virus Tax:1335626
300 25237-25244 Species denotes patient Tax:9606
301 25056-25076 Disease denotes respiratory symptoms MESH:D012818
302 25092-25096 Disease denotes MERS MESH:D018352
303 25097-25106 Disease denotes infection MESH:D007239
304 25305-25309 Disease denotes MERS MESH:D018352
305 25465-25469 Disease denotes MERS MESH:D018352
306 25527-25531 Disease denotes MERS MESH:D018352
307 25811-25815 Disease denotes MERS MESH:D018352
316 27614-27621 Species denotes patient Tax:9606
317 27246-27255 Disease denotes infection MESH:D007239
318 27334-27338 Disease denotes MERS MESH:D018352
319 27440-27444 Disease denotes MERS MESH:D018352
320 27466-27474 Disease denotes infected MESH:D007239
321 27581-27585 Disease denotes MERS MESH:D018352
322 27783-27787 Disease denotes MERS MESH:D018352
323 28031-28040 Disease denotes infection MESH:D007239
325 30204-30207 Gene denotes DDH Gene:1645
343 28987-28990 Gene denotes DDH Gene:1645
344 29323-29326 Gene denotes DDH Gene:1645
345 29377-29380 Gene denotes DDH Gene:1645
346 29542-29545 Gene denotes DDH Gene:1645
347 29651-29654 Gene denotes DDH Gene:1645
348 28237-28257 Disease denotes nosocomial infection MESH:D003428
349 28372-28392 Disease denotes nosocomial infection MESH:D003428
350 28627-28636 Disease denotes infection MESH:D007239
351 28722-28726 Disease denotes MERS MESH:D018352
352 28791-28800 Disease denotes infection MESH:D007239
353 29151-29155 Disease denotes MERS MESH:D018352
354 29156-29165 Disease denotes infection MESH:D007239
355 29430-29434 Disease denotes MERS MESH:D018352
356 29708-29716 Disease denotes infected MESH:D007239
357 29801-29805 Disease denotes MERS MESH:D018352
358 29998-30002 Disease denotes MERS MESH:D018352
359 30003-30012 Disease denotes infection MESH:D007239
362 32044-32048 Disease denotes MERS MESH:D018352
363 32049-32058 Disease denotes infection MESH:D007239
367 31878-31889 Species denotes common; Fig Tax:3494
368 30792-30801 Chemical denotes bipartite
369 31935-31939 Disease denotes MERS MESH:D018352
371 33581-33584 Gene denotes Nca Gene:1089
373 33700-33710 Disease denotes infections MESH:D007239
375 33014-33018 Disease denotes MERS MESH:D018352
377 34193-34220 Disease denotes major nosocomial infections MESH:D003428
382 35218-35222 Disease denotes MERS MESH:D018352
383 35405-35409 Disease denotes MERS MESH:D018352
384 35522-35531 Disease denotes infection MESH:D007239
385 35629-35649 Disease denotes nosocomial infection MESH:D003428
396 35804-35808 Disease denotes MERS MESH:D018352
397 35893-35897 Disease denotes MERS MESH:D018352
398 35929-35933 Disease denotes MERS MESH:D018352
399 36053-36074 Disease denotes nosocomial infections MESH:D003428
400 36252-36256 Disease denotes MERS MESH:D018352
401 36257-36266 Disease denotes infection MESH:D007239
402 36501-36505 Disease denotes MERS MESH:D018352
403 36521-36530 Disease denotes infection MESH:D007239
404 36612-36621 Disease denotes infection MESH:D007239
405 36817-36836 Disease denotes infectious diseases MESH:D003141
409 37020-37039 Disease denotes infectious diseases MESH:D003141
410 37733-37737 Disease denotes MERS MESH:D018352
411 37750-37770 Disease denotes nosocomial infection MESH:D003428
423 38230-38236 Species denotes people Tax:9606
424 38280-38288 Species denotes patients Tax:9606
425 38366-38374 Species denotes patients Tax:9606
426 38517-38525 Species denotes patients Tax:9606
427 38912-38920 Species denotes patients Tax:9606
428 38219-38223 Disease denotes MERS MESH:D018352
429 38464-38473 Disease denotes infection MESH:D007239
430 38768-38772 Disease denotes MERS MESH:D018352
431 39148-39157 Disease denotes infection MESH:D007239
432 39469-39473 Disease denotes MERS MESH:D018352
433 39655-39659 Disease denotes MERS MESH:D018352
441 39876-39883 Species denotes patient Tax:9606
442 40198-40206 Species denotes patients Tax:9606
443 40101-40109 Disease denotes infected MESH:D007239
444 40117-40121 Disease denotes MERS MESH:D018352
445 40331-40351 Disease denotes nosocomial infection MESH:D003428
446 40451-40464 Disease denotes MERS-infected MESH:D018352
447 40680-40690 Disease denotes infections MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2098-2102 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T2 33725-33729 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1573-1578 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T2 2065-2070 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T3 2098-2102 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T4 2250-2255 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T5 13151-13156 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T6 33725-33729 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398
T7 37316-37321 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 29-47 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T7 281-291 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T8 301-305 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 314-319 Disease denotes Ebola http://purl.obolibrary.org/obo/MONDO_0005737
T10 337-341 Disease denotes Zika http://purl.obolibrary.org/obo/MONDO_0018661
T11 694-704 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T12 1338-1347 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 2179-2188 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 3323-3332 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T15 3629-3633 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 3817-3835 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T17 4061-4071 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T18 4096-4100 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 4144-4153 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 4307-4316 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 4678-4699 Disease denotes respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T22 4690-4699 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 5393-5402 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T24 5792-5801 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 6008-6018 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T26 6356-6365 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T27 6498-6507 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 6678-6688 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T29 6842-6851 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 7113-7131 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T31 7666-7675 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T32 8293-8303 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T33 8467-8476 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T34 8513-8540 Disease denotes hospital-acquired infection http://purl.obolibrary.org/obo/MONDO_0043544
T35 8531-8540 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 8556-8576 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T37 8567-8576 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 9205-9214 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T39 9655-9665 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T40 9788-9797 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T41 9903-9913 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T42 10422-10449 Disease denotes hospital-acquired infection http://purl.obolibrary.org/obo/MONDO_0043544
T43 10440-10449 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T44 10643-10652 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T45 11662-11671 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T46 11973-11982 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T47 12115-12136 Disease denotes nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T48 12197-12207 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T49 13748-13757 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T50 13922-13932 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T51 14225-14235 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T52 14365-14374 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T53 14414-14423 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T54 14775-14784 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T55 15451-15461 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T56 17810-17820 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T57 18153-18162 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 18376-18386 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T59 18552-18562 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T60 18695-18704 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T61 18863-18873 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T62 19047-19049 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T63 19094-19103 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T64 19527-19537 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T65 19707-19716 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T66 19738-19748 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T67 19785-19794 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T68 20013-20023 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T69 20202-20212 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T70 21018-21027 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T71 21460-21470 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T72 21538-21548 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T73 21672-21682 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T74 21778-21788 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T75 21914-21924 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T76 21947-21957 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T77 22052-22061 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T78 22111-22121 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T79 22239-22248 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T80 22256-22266 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T81 22484-22494 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T82 23085-23094 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T83 23180-23189 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T84 23317-23326 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T85 23486-23495 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T86 23595-23605 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T87 23867-23876 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T88 24194-24203 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T89 24757-24767 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T90 24929-24938 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T91 24960-24980 Disease denotes Nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T92 24971-24980 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T93 25097-25106 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T94 25958-25967 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T95 26335-26338 Disease denotes ASC http://purl.obolibrary.org/obo/MONDO_0019018
T96 27246-27255 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T97 28031-28040 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T98 28237-28257 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T99 28248-28257 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T100 28372-28392 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T101 28383-28392 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T102 28627-28636 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T103 28791-28800 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T104 29156-29165 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T105 30003-30012 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T106 31339-31349 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T107 32049-32058 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T108 33398-33408 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T109 33682-33710 Disease denotes hospital-acquired infections http://purl.obolibrary.org/obo/MONDO_0043544
T110 34199-34220 Disease denotes nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T111 35076-35086 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T112 35288-35298 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T113 35522-35531 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T114 35629-35649 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T115 35640-35649 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T116 35748-35758 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T117 36053-36074 Disease denotes nosocomial infections http://purl.obolibrary.org/obo/MONDO_0043544
T118 36257-36266 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T119 36521-36530 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T120 36612-36621 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T121 36817-36827 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T122 37020-37030 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T123 37497-37507 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T124 37750-37770 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T125 37761-37770 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T126 38152-38162 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T127 38464-38473 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T128 39148-39157 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T129 40331-40351 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T130 40342-40351 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T131 40680-40690 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T4 216-217 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 413-416 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 648-658 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T7 977-978 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1121-1122 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1204-1205 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1413-1414 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1622-1623 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1882-1883 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2151-2152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 2460-2461 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2608-2611 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 2898-2899 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 3112-3113 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 3523-3530 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T19 3652-3655 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 3784-3785 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 3997-3998 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 4042-4043 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 4162-4163 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T24 4267-4268 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4435-4438 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T26 4582-4585 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T27 4606-4611 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T28 4615-4620 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T29 4670-4671 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 4710-4711 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T31 4848-4851 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T32 4963-4968 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T33 5148-5149 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 5386-5387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 5564-5565 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 6138-6139 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 6151-6152 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T38 6544-6545 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T39 6551-6554 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T40 6689-6694 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 7098-7099 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 7158-7159 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 7171-7172 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 7212-7213 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T45 7223-7224 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 7276-7281 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T47 7285-7286 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 7431-7436 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T49 8131-8132 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 8207-8208 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T51 8229-8230 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T52 8325-8326 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 8348-8349 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T54 8478-8479 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T55 8511-8512 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T56 8578-8579 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T57 8656-8657 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T58 8887-8888 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T59 9814-9815 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 9839-9840 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 10078-10079 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T62 10265-10266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T63 10762-10764 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T64 11185-11186 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T65 11627-11628 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T66 11769-11770 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 11916-11917 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T68 12046-12047 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 12224-12225 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T70 12344-12345 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 12371-12372 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 12582-12583 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 12969-12972 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T74 13034-13035 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 13105-13106 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 13244-13245 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 13276-13277 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 13707-13710 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T79 14014-14016 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T80 14547-14548 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 14570-14571 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 14607-14608 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 14817-14818 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 14866-14867 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 16685-16688 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T86 16711-16714 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T87 16728-16730 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T88 16728-16730 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T89 16746-16749 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T90 16757-16759 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T91 16757-16759 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T92 16801-16804 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T93 16821-16823 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T94 16821-16823 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T95 16918-16921 http://purl.obolibrary.org/obo/CLO_0050171 denotes M10
T96 16961-16964 http://purl.obolibrary.org/obo/CLO_0007461 denotes M15
T97 17007-17010 http://purl.obolibrary.org/obo/CLO_0007461 denotes M15
T98 17035-17038 http://purl.obolibrary.org/obo/CLO_0007461 denotes M15
T99 17617-17618 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T100 17713-17716 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T101 17726-17728 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T102 17726-17728 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T103 18056-18065 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 and #14
T104 18323-18324 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 18409-18411 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T106 18489-18490 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T107 18777-18778 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T108 18911-18914 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T109 18957-18958 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T110 18979-18980 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T111 19190-19191 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 19557-19558 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T113 19861-19862 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T114 20090-20091 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T115 20158-20167 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 and #14
T116 20434-20435 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T117 20849-20850 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 20879-20880 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T119 21452-21453 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T120 21486-21487 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 21576-21577 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T122 22292-22293 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T123 22539-22542 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T124 22560-22562 http://purl.obolibrary.org/obo/CLO_0007448 denotes M1
T125 22560-22562 http://purl.obolibrary.org/obo/CLO_0050175 denotes M1
T126 22588-22591 http://purl.obolibrary.org/obo/CLO_0001404 denotes 506
T127 22618-22621 http://purl.obolibrary.org/obo/CLO_0007461 denotes M15
T128 22686-22687 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T129 22768-22769 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T130 22820-22823 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T131 22883-22886 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T132 23163-23164 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 23305-23306 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 23805-23806 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T135 23898-23899 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 24025-24027 http://purl.obolibrary.org/obo/CLO_0008192 denotes Np
T137 24100-24101 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T138 24483-24488 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3, #6
T139 24511-24513 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T140 24521-24523 http://purl.obolibrary.org/obo/CLO_0001407 denotes 52
T141 24549-24552 http://purl.obolibrary.org/obo/CLO_0054061 denotes 132
T142 24741-24742 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T143 25159-25160 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T144 25205-25210 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T145 25487-25489 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2a
T146 25500-25509 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T147 25605-25606 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T148 25666-25675 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T149 25763-25764 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T150 25864-25865 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T151 25895-25896 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T152 25903-25912 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T153 26030-26031 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T154 26038-26047 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T155 26109-26118 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T156 26198-26207 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T157 26745-26747 http://purl.obolibrary.org/obo/CLO_0009141 denotes St
T158 26745-26747 http://purl.obolibrary.org/obo/CLO_0050980 denotes St
T159 26779-26782 http://purl.obolibrary.org/obo/UBERON_0009856 denotes SAC
T160 27024-27026 http://purl.obolibrary.org/obo/CLO_0009141 denotes St
T161 27024-27026 http://purl.obolibrary.org/obo/CLO_0050980 denotes St
T162 27065-27074 http://purl.obolibrary.org/obo/UBERON_0001353 denotes posterior
T163 27825-27826 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T164 27844-27845 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T165 27898-27899 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T166 28007-28008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T167 28141-28144 http://purl.obolibrary.org/obo/CLO_0001382 denotes 4–8
T168 29199-29208 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 and #14
T169 30417-30421 http://purl.obolibrary.org/obo/CLO_0007450 denotes M1 4
T170 30537-30540 http://purl.obolibrary.org/obo/CLO_0007491 denotes M90
T171 30691-30694 http://purl.obolibrary.org/obo/CLO_0007450 denotes M14
T172 30980-30981 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T173 31361-31370 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 and #14
T174 31738-31746 http://purl.obolibrary.org/obo/CLO_0053001 denotes 1 to #14
T175 31923-31924 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T176 32514-32515 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T177 32642-32643 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T178 32714-32720 http://purl.obolibrary.org/obo/CLO_0001046 denotes 1, #16
T179 33275-33276 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T180 33731-33732 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T181 34077-34078 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T182 34339-34340 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T183 34441-34442 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T184 35112-35113 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T185 35337-35340 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T186 35698-35699 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T187 35785-35786 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T188 36440-36441 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T189 36559-36560 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T190 36693-36696 http://purl.obolibrary.org/obo/PR_000001343 denotes aim
T191 37180-37181 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 37748-37749 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T193 38599-38600 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T194 39116-39126 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T195 39355-39356 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T196 39708-39711 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T197 40364-40365 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 10762-10764 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T2 13887-13892 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T3 14035-14040 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T4 14158-14163 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T5 15069-15074 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T6 16636-16639 Chemical denotes Bet http://purl.obolibrary.org/obo/CHEBI_17750
T7 16728-16730 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T11 16757-16759 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T15 16787-16790 Chemical denotes M16 http://purl.obolibrary.org/obo/CHEBI_140163
T16 16821-16823 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T20 16832-16835 Chemical denotes M16 http://purl.obolibrary.org/obo/CHEBI_140163
T21 16873-16876 Chemical denotes M16 http://purl.obolibrary.org/obo/CHEBI_140163
T22 16918-16921 Chemical denotes M10 http://purl.obolibrary.org/obo/CHEBI_140167
T23 17726-17728 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T27 22560-22562 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T31 22579-22582 Chemical denotes M16 http://purl.obolibrary.org/obo/CHEBI_140163
T32 24025-24027 Chemical denotes Np http://purl.obolibrary.org/obo/CHEBI_33387
T33 24127-24136 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T34 26459-26462 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T35 26678-26681 Chemical denotes PGH http://purl.obolibrary.org/obo/CHEBI_26344
T36 26989-26992 Chemical denotes Lin http://purl.obolibrary.org/obo/CHEBI_32386
T37 28992-28995 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T38 28997-29000 Chemical denotes PGH http://purl.obolibrary.org/obo/CHEBI_26344
T39 29131-29134 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T40 29332-29335 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T41 29386-29389 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T42 29551-29554 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T43 29659-29662 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T44 29749-29752 Chemical denotes PGH http://purl.obolibrary.org/obo/CHEBI_26344
T45 30235-30238 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T46 30266-30269 Chemical denotes PGH http://purl.obolibrary.org/obo/CHEBI_26344
T47 30417-30419 Chemical denotes M1 http://purl.obolibrary.org/obo/CHEBI_51079|http://purl.obolibrary.org/obo/CHEBI_139019|http://purl.obolibrary.org/obo/CHEBI_140152|http://purl.obolibrary.org/obo/CHEBI_34826
T51 30721-30724 Chemical denotes M16 http://purl.obolibrary.org/obo/CHEBI_140163
T52 31204-31207 Chemical denotes PGH http://purl.obolibrary.org/obo/CHEBI_26344
T53 32877-32880 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T54 33550-33553 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T55 34149-34152 Chemical denotes DKH http://purl.obolibrary.org/obo/CHEBI_27972
T56 34382-34385 Chemical denotes PGH http://purl.obolibrary.org/obo/CHEBI_26344

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3240-3251 http://purl.obolibrary.org/obo/GO_0007610 denotes behavioural
T2 3306-3315 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T3 3306-3315 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence
T4 3551-3560 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviour
T5 3686-3696 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviours
T6 3959-3968 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviour
T7 4910-4920 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions
T8 25798-25807 http://purl.obolibrary.org/obo/GO_0007610 denotes behaviour
T9 33879-33899 http://purl.obolibrary.org/obo/GO_0051701 denotes interacted with host
T10 33960-33978 http://purl.obolibrary.org/obo/GO_0051701 denotes interact with host

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T10 0-12 Sentence denotes Introduction
T11 13-138 Sentence denotes Transmission of infectious disease through contact among individuals increases the risk of outbreaks with epidemic potential.
T12 139-228 Sentence denotes However, understanding how diseases spread over networks of contacts remains a challenge.
T13 229-492 Sentence denotes In particular, outbreaks of potentially devastating infections, such as SARS (2003), Ebola (2014–2015), and Zika (2015–2016), have shown that the dynamics behind the spread of disease has become more complex, limiting our ability to predict and control epidemics.
T14 493-714 Sentence denotes In this regard, patterns of disease transmission should be used to design specific public health strategies to enhance sustainable capacity while building activities to improve government responses to infectious diseases.
T15 715-887 Sentence denotes Therefore, an analysis of disease dynamics based on the contact patterns can be used to build practical guidance while framing disease prevention and management strategies.
T16 888-1024 Sentence denotes The interpersonal contact patterns of disease transmissions have often been discussed in a network context while modelling epidemics1–4.
T17 1025-1166 Sentence denotes Most potential disease contact takes place in localized communities among individuals occupying a local geographic space around the diseased.
T18 1167-1257 Sentence denotes If such contacts are repeated within a given period, certain patterns of links will arise.
T19 1258-1366 Sentence denotes These link patterns can be represented as networks, which show the spread of an infection among individuals.
T20 1367-1466 Sentence denotes Thus, certain disease dynamics represented in a contact network can be characterised by topologies.
T21 1467-1593 Sentence denotes Previous studies on super-spreaders have identified two major types of networks, small-world network5 and scale-free network6.
T22 1594-1736 Sentence denotes In the small-world network, a small number of shortcuts are discovered either by randomly connecting the nodes or randomly rewiring the links.
T23 1737-1921 Sentence denotes From the shortcuts, it can be inferred that the average node length between any two individuals is shortened, thereby making geographic distance a causal factor in epidemic outbreaks7.
T24 1922-2057 Sentence denotes In the small-world network context, thus, it is important to control the super-spreading events to prevent completely new outbreaks8,9.
T25 2058-2195 Sentence denotes In the scale-free network, on the other hand, the number of contacts per individual exhibits a power-law distribution of infection links.
T26 2196-2335 Sentence denotes The variation in the connectivity distribution of the scale-free network is infinite, because it does not exhibit the threshold phenomenon.
T27 2336-2379 Sentence denotes Hence, an outbreak can occur at any time10.
T28 2380-2546 Sentence denotes It can be inferred from both networks that the average shortest path length and a small degree of separation are important factors in the epidemic network analysis11.
T29 2547-2696 Sentence denotes Furthermore, the super-spreading characteristic of epidemics has been associated with the spatial proximity of neighbouring nodes in the network5,12.
T30 2697-2880 Sentence denotes Localised transmission of the epidemic is facilitated by high clustering coefficients, because of the close spatial proximity in node connectivity and its influence on their relation.
T31 2881-3070 Sentence denotes Thus, nodes with a high spatial proximity tend to intensify super-spreading events within clusters, making it easy for the disease to spread locally over the considered population or areas.
T32 3071-3471 Sentence denotes It is known that three factors can cause a disproportionately large number of secondary contacts during super-spreading events13: host factors (including physiological, behavioural, and immunological factors); viral factors (including virulence and co-infection factors); and environmental factors (including density, failure to recognise the disease, inter-hospital transfers, and airflow dynamics).
T33 3472-3648 Sentence denotes Among these various factors, previous studies have focused specifically on the behaviour of the host and environmental factors in explaining the outbreak of SARS and MERS14,15.
T34 3649-3939 Sentence denotes It has been established that certain behaviours of the hosts, such as doctor shopping (visiting multiple doctors and facilities), play a critical role in the spread of infectious disease, as multiple visits by the super-spreaders can lead to the contamination of several medical facilities.
T35 3940-4191 Sentence denotes In addition to the behaviour of the infected individual, a high population density also correlates to a higher number of infections emanating from both the SARS and MERS hosts, because the probability of infection in such a setting tends to be high15.
T36 4192-4354 Sentence denotes Given that the edges in the epidemic network represent physical proximity, a high level of clustering implies that infection occurs locally and spreads rapidly16.
T37 4355-4578 Sentence denotes The 2015 outbreak of the Middle East Respiratory Syndrome (MERS) in South Korea has been paid much attention as the outbreak was the first and biggest to occur outside Saudi Arabia, where the disease was identified in 2012.
T38 4579-4790 Sentence denotes It has been known that the human-to-human transmission of MERS-coronavirus (CoV), which is a viral respiratory infection caused by a coronavirus, is relatively limited owing to its lower level of contagiousness.
T39 4791-4921 Sentence denotes According to Centers for Disease Control and Prevention (CDC)17, MERS is thought to be transmitted through respiratory secretions.
T40 4922-5001 Sentence denotes However, the particular way in which the virus spreads is not fully understood.
T41 5002-5122 Sentence denotes During the MERS epidemic of 2015, 186 people across 16 healthcare facilities were infected, of whom 39 lost their lives.
T42 5123-5266 Sentence denotes This biggest outbreak in a relatively short time began with an ‘index patient’, who had visited the Middle East and returned to Korea on May 4.
T43 5267-5413 Sentence denotes The patient sought treatment for respiratory symptoms at several healthcare facilities and was later confirmed to have a MERS infection on May 20.
T44 5414-5535 Sentence denotes By then, 31 people had come in contact with the patient, including family members, patients, visitors and hospital staff.
T45 5536-5669 Sentence denotes In one instance of contact, a second patient was exposed to MERS while sharing an emergency room where the index patient sought care.
T46 5670-5756 Sentence denotes The two patients became super-spreaders, assumed to generate many transmission events.
T47 5757-5835 Sentence denotes Thus, they were likely to initiate infection among the susceptible population.
T48 5836-5969 Sentence denotes Our expectation is that super-spreaders are more likely to hold certain structural advantages in facilitating continued transmission.
T49 5970-6108 Sentence denotes This study investigates the spread of infections over networks of contacts among individuals by exploring the 2015 MERS outbreak in Korea.
T50 6109-6293 Sentence denotes We assume that the spread of a disease in a population depends on both the dynamics of the disease transmission and the structure of the contact networks over which they spread1,18–24.
T51 6294-6422 Sentence denotes One perspective contends that the hosts who transmit the MERS infection are those who are highly central in the contact network.
T52 6423-6508 Sentence denotes Thus, many neighbouring hosts form relational ties to others vulnerable to infection.
T53 6509-6722 Sentence denotes Another perspective argues that if a host has already been infected and other hosts are not yet exposed, healthcare facilities play the pertinent role of delivering the infectious virus to other susceptible hosts.
T54 6723-7013 Sentence denotes We analyze structural network properties of the epidemic transmission by examining both the relationship matrix of the infection tracing of infected individuals (from-whom-to-whom) and the bipartite transmission routes of infected individuals by healthcare facilities visited for treatment.
T55 7014-7314 Sentence denotes In this study, we explore two research questions about the MERS outbreak in Korea: (a) How did the infectious disease become widespread through a network in a relatively short period of time?; and (b) How did a small fraction of individual hosts spread the MERS virus to a majority of the population?
T56 7316-7323 Sentence denotes Methods
T57 7325-7329 Sentence denotes Data
T58 7330-7478 Sentence denotes The dataset contains records of all 186 people, across 43 hospitals, who were infected with the MERS virus between May 20 and July 4, 2015 in Korea.
T59 7479-7584 Sentence denotes The data is publicly available on press mentions from the Korea Centers for Disease Control & Prevention.
T60 7585-7715 Sentence denotes The data includes diagnosis and reporting date, sex, age at diagnosis, source of infection, transmission route, and stage of MERS.
T61 7716-7815 Sentence denotes Scholarly papers in various journals and news media also provided current issues of the MERS event.
T62 7816-7900 Sentence denotes The use of multiple sources of evidence allows us to validate the research findings.
T63 7901-8049 Sentence denotes In this study, the contact patterns coming from Marquetoux et al.25 are established by tracing the relationship matrix of individuals and hospitals.
T64 8050-8130 Sentence denotes The data for the analysis contains two types of contacts: personal and hospital.
T65 8131-8191 Sentence denotes A personal contact is defined as the person-to-person route.
T66 8192-8244 Sentence denotes The format for a personal contact is a daily record.
T67 8245-8477 Sentence denotes For every pair of individual hosts between whom infectious contacts occurred on a given date, there is a daily record including the source (infector) and target individuals (infected) presented with the spread of the MERS infection.
T68 8478-8577 Sentence denotes A hospital contact is defined as a hospital-acquired infection, also known as nosocomial infection.
T69 8578-8737 Sentence denotes A contact occurs when an infected individual visits healthcare facilities for a limited time period for MERS diagnosis, treatment, and follow-up visit records.
T70 8738-8873 Sentence denotes Each hospital contact corresponds to an actual visit of the individual hosts and includes the date on which the contact event occurred.
T71 8874-8945 Sentence denotes We construct a matrix of contact patterns of individuals and hospitals.
T72 8946-9120 Sentence denotes The number of observations for the personal contacts are 161(source: n) and 31(target: k), and those for the hospital contacts are 186 (infected host: n) and 43(hospital: k).
T73 9121-9247 Sentence denotes Among the 186 confirmed cases (including one case confirmed by China), the rates of infection were confirmed to be as follows:
T74 9248-9522 Sentence denotes 44.1% (82 cases) among in- or out-patients sharing wards with the MERS patient; 34.4% (64 cases) among the hospitalised MERS patient’s cohabiting family members or visitors; and 21.0% (39 cases) among the healthcare workers or staff employed at the MERS-affected hospital26.
T75 9523-9688 Sentence denotes Based on this data, we use an adjacency matrix to construct contact networks consisting of all recorded transmission routes of MERS infections from May 20 to July 4.
T76 9689-9861 Sentence denotes In the personal contact network, each pair of individuals, p, is examined to determine whether the infection was passed from a source individual i to a target individual j.
T77 9862-9994 Sentence denotes Thus, Rij:p is equal to 1 if there is an infectious contact between individuals i and j; the personal contact network is as follows:
T78 9995-10031 Sentence denotes Rp = 1 if Rij:p = 1 and 0 otherwise.
T79 10032-10245 Sentence denotes In the hospital contact network, we first use a two-mode incidence matrix to form individual host-by-hospital contact relations, in which Rij:h = 1 if individual host i visited hospital j, and Rij:h = 0 otherwise.
T80 10246-10417 Sentence denotes Next, we construct a bipartite graph consisting of the union of the individual hosts and hospitals as nodes with the edges only connecting individual hosts with hospitals.
T81 10418-10597 Sentence denotes For hospital-acquired infection, therefore, individual hosts are connected only by co-presence in hospitals, and hospitals are connected only by having individual hosts in common.
T82 10598-10745 Sentence denotes Thus, the exposed contacts through which the infection can spread are represented by the co-presence of two individual hosts in the same hospitals.
T83 10746-10898 Sentence denotes All the data in MS Excel, network measures, and visual displays of disease contact relations are produced using UCINET 627, Net-Draw28, and VOSviewer29.
T84 10900-10921 Sentence denotes Analytical techniques
T85 10922-11092 Sentence denotes This study examines the 2015 MERS outbreak in Korea using network analysis tools such as the indicators of centrality, egocentric network, core-periphery, and cut-points.
T86 11093-11326 Sentence denotes First, centrality pertains to the node’s (as unit of analysis: individual host) position in a network through specific analysis that is preoccupied with the degree, betweenness, closeness, and eigenvector of the geodesic distances30.
T87 11327-11580 Sentence denotes Then, the egocentric network is used to identify the topologies of the contact networks in which single individual hosts are bound with their neighbouring individual hosts to reveal the link between direct contact and the spread of the MERS infection31.
T88 11581-11759 Sentence denotes Furthermore, the core-periphery structures in a given network can reveal how the infection is transmitted locally or globally through the interaction of the core and periphery32.
T89 11760-12003 Sentence denotes Finally, a cut-point approach is used to identify the key hosts whose removal from the network would divide the network into un-connected parts, indicating a potential weakness in the network or disruption of the infection transmission flow33.
T90 12004-12250 Sentence denotes The comprehensive analysis can reveal how a disease contact network can be formed among individuals exposed to nosocomial infections, and the impact of the super-spreaders on the prevalence of infectious diseases within a relatively short period.
T91 12252-12259 Sentence denotes Results
T92 12261-12292 Sentence denotes Network property of small-world
T93 12293-12394 Sentence denotes Every node can be reached from every other node by a small number of steps in a small-world network5.
T94 12395-12578 Sentence denotes The personal contact network was assumed to have distinct clusters of individual hosts exposed to the path of MERS transmission, whereas the geodesics among these clusters were small.
T95 12579-12737 Sentence denotes In a given network of personal contacts, the overall network density of 0.014 implies that only 1.4% of potential personal connections were actually realized.
T96 12738-12992 Sentence denotes The average path length was 3.131 (disregarding the directness of relationships), and the average clustering coefficient was 0.258, which is significantly larger than the value for the corresponding classical random network, 1.117/162 = ∼0.007 (Table 1).
T97 12993-13076 Sentence denotes Thus, the network was considered to have a small-world property (small-world index:
T98 13077-13179 Sentence denotes 1.046) with the presence of a small number of highly connected hub hosts (scale-free characteristics).
T99 13180-13314 Sentence denotes Additionally, the distance-based cohesion of 0.355 demonstrated a large fragmented network with a relatively weak structural cohesion.
T100 13315-13436 Sentence denotes That is, the network would become disconnected if specific hosts who acted as shortcuts between the two clusters removed.
T101 13437-13495 Sentence denotes Table 1 Structural properties of personal contact network.
T102 13496-13510 Sentence denotes Category Value
T103 13511-13532 Sentence denotes Network Density 0.014
T104 13533-13569 Sentence denotes Average Clustering Coefficient 0.258
T105 13570-13595 Sentence denotes Average Path Length 3.131
T106 13596-13639 Sentence denotes Distance-based Cohesion (Compactness) 0.355
T107 13640-13663 Sentence denotes Small-World Index 1.046
T108 13664-13684 Sentence denotes Average Degree 1.117
T109 13685-13710 Sentence denotes Total number of Nodes 162
T110 13711-13876 Sentence denotes As shown in Fig. 1, the relations of infection transmission within the personal contact network are visually displayed by three sub-groups based on k-core regions34.
T111 13877-14023 Sentence denotes The first group, marked in red, contains hub infectious hosts (#14, #1), as well as the high in-degree susceptible hosts (#37, #39, #9, #11, #12).
T112 14024-14147 Sentence denotes The second group, marked in blue, comprises susceptible hosts mainly infected through direct contact with hosts #14 and #1.
T113 14148-14321 Sentence denotes The third group, marked in black, includes the most peripheral indirect host infections through interpersonal transmission (see Supplementary Figs. 1–3 for further details).
T114 14322-14388 Sentence denotes Figure 1 Personal Contact Patterns in MERS Infection Transmission.
T115 14389-14546 Sentence denotes The overall relations of infection transmission within the personal contact network; three connected sub-structures are identified with the k-core algorithm.
T116 14547-14726 Sentence denotes A k-core is defined as a hierarchical set of hosts based on a range for each number of contacts they each have according to the degree of connection the hosts have in the network.
T117 14727-14785 Sentence denotes All nodes represent hosts having contacted MERS infection.
T118 14786-14974 Sentence denotes Thus, all hosts that generated a given transmission event to k other hosts form a sub-structure, and any host that generated multiple transmission events will link multiple sub-structures.
T119 14975-15186 Sentence denotes Colors correspond to the k-core partition (red: the first, blue: the second, black: the third group) and the size of the nodes in each k-core is proportional to the individual node eigenvector centrality values.
T120 15188-15237 Sentence denotes Overall network relationship of personal contacts
T121 15238-15384 Sentence denotes In network analysis, the nodes are individual hosts, and the links between individuals represent interactions that may allow disease transmission.
T122 15385-15548 Sentence denotes The descriptive statistics demonstrate that the average degree of infectious hosts was 1.117, which was quite low, given that there were 161 other hosts (Table 2).
T123 15549-15789 Sentence denotes We see that the range of out-degree was significantly larger than that of the in-degree (minimum and maximum), and that there was more variability across the hosts in the out-degree than in the in-degree (standard deviations and variances).
T124 15790-15879 Sentence denotes The coefficient variations for out-degree and in-degree were 5.87 and 0.47, respectively.
T125 15880-16012 Sentence denotes Thus, the population was more heterogeneous in structural contact positions with regard to out-degree than with regard to in-degree.
T126 16013-16150 Sentence denotes The overall centralization of out-degree was high at 46%, and the in-degree centralization was low at 2.4% of these theoretical maximums.
T127 16151-16303 Sentence denotes We arrived at the conclusion that the network of disease transmission might have been dominated more by key hosts than by various groups of individuals.
T128 16304-16421 Sentence denotes That is, the heterogeneity of the number of contacts tended to affect the spread and persistence of infection6,25,35.
T129 16422-16510 Sentence denotes Table 2 Centrality measure scores and descriptive statistics for the top-5 ranked hosts.
T130 16511-16610 Sentence denotes Rank Degree Centrality Betweenness Centrality Closeness Centrality Eigenvector of geodesic distance
T131 16611-16682 Sentence denotes OutDeg Value InDeg Value Bet Value OutFar Value InFar Value Eigen Value
T132 16683-16754 Sentence denotes 1 M14 74(45.96) M37 5(3.11) M14 91.75(0.356) M1 314 M162 25119 M14 0.69
T133 16755-16829 Sentence denotes 2 M1 31(19.26) M39 M162 4(2.48) M16 25(0.097) M14 10968 M37 25277 M1 0.161
T134 16830-16902 Sentence denotes 3 M16 23(14.29) M179 3(1.86) M76 20(0.078) M16 22059 M39 25278 M37 0.111
T135 16903-17004 Sentence denotes 4 M76 10(6.21) M10 M40, M46 M65 M67 M74 M107 M164 2(1.24) M15 6(0.023) M76 24472 M179 25280 M39 0.093
T136 17005-17065 Sentence denotes 5 M15 6(3.73) M135 4.5(0.017) M15 25116 M164 25441 M76 0.089
T137 17066-17112 Sentence denotes Mean 1.117 1.117 1.086 25751.15 25751.15 0.048
T138 17113-17117 Sentence denotes Std.
T139 17118-17122 Sentence denotes Dev.
T140 17123-17163 Sentence denotes 6.556 0.526 7.604 2351.923 129.203 0.062
T141 17164-17209 Sentence denotes Variance 42.98 0.276 57.818 5531541.5 16693.4
T142 17210-17233 Sentence denotes Minimum 0 0 0 314 25119
T143 17234-17264 Sentence denotes Maximum 74 5 91.75 26082 26082
T144 17265-17320 Sentence denotes Network centralization 45.55% 2.43% 0.35% 47.20% 99.18%
T145 17322-17340 Sentence denotes Network centrality
T146 17341-17526 Sentence denotes We sought to investigate the degree centrality of MERS contact relations, because super-spreaders involved in disease transmission pathways are known for their role in disease dynamics.
T147 17527-17657 Sentence denotes The degree centrality describes the extent to which an individual host may be cohesive to a network of personal contact relations.
T148 17658-17955 Sentence denotes In the degree centrality results (Table 2), hosts #14 (M14) and #1 (M1) had higher percentages of out-degree links, indicating that they were in direct infectious contact with many other target hosts in the network, because each had more than 19% network centrality (46% for #14 and 19.3% for #1).
T149 17956-18021 Sentence denotes Most other hosts in the network had relatively fewer connections.
T150 18022-18215 Sentence denotes These direct contacts made hosts #1 and #14 more accessible to other hosts, generating several transmission chains that led to the infection of the susceptible target population in the network.
T151 18216-18415 Sentence denotes This means that small fractions of highly connected ‘hub’ hosts acting as potential super-spreaders played a pertinent role in fueling and driving epidemics of infectious diseases (infectivity)36–39.
T152 18416-18750 Sentence denotes In other words, both host #1 (the index case: the first host infected in a chain of transmission) and host #14 (secondary case: typical infectious host) were well-characterised super-spreaders who held prominent structural advantage in facilitating continued transmission of the infection to susceptible hosts in their neighbourhoods.
T153 18751-18925 Sentence denotes By contrast, host #37 had a high in-degree and was more at risk of becoming infected through contact with other infectious individuals, followed by hosts #39, #162, and #179.
T154 18926-19120 Sentence denotes In other words, the more often a host was exposed to a potential threat by way of coming in contact, the more vulnerable he or she was to the risks leading to the MERS infection (vulnerability).
T155 19121-19361 Sentence denotes Regarding betweenness centrality, which measures the extent to which a particular individual host lies between other hosts in the network, the overall network centralization was very low at 0.35% of the purely centralized network (Table 2).
T156 19362-19448 Sentence denotes Thus, most contacts could be made in this network without the aid of any intermediary.
T157 19449-19665 Sentence denotes Despite this structural constraint, hosts #16 and #76, along with the typical infectious host #14, provided a spatial link or pathway through which MERS was transmitted from the source to the target host populations.
T158 19666-19895 Sentence denotes For instance, host #14, who acquired the infection through contact with infectious host #1, infected host #76, and the infection transmission continued to emerge through personal contacts within a population of susceptible hosts.
T159 19896-20024 Sentence denotes Without the tie to bridge hosts, therefore, other susceptible individuals might have been largely isolated from MERS infections.
T160 20025-20134 Sentence denotes The closeness centrality indicates the potential independence of a host from the relation of disease contact.
T161 20135-20430 Sentence denotes With closeness, hosts #1 and #14 had significant potential to make infectious contacts with the target host because of the shorter paths to transmission possibilities, thereby enabling the initial introduction and subsequent spread of MERS towards its target population with transitory contacts.
T162 20431-20520 Sentence denotes As a result, overall closeness centralization was higher than betweenness centralization.
T163 20521-20630 Sentence denotes This suggests that there were decentralized short-distance disease contact routes with centralised hub hosts.
T164 20631-20794 Sentence denotes However, no significant mediation was observed (47.2%: the distributions of in-and out-closenesses could not be computed because the network was weakly connected).
T165 20795-20908 Sentence denotes Finally, the eigenvector of geodesic distances offers a measure of the diversity of a personal contact’s network.
T166 20909-21238 Sentence denotes The results show that host #14 had the highest eigenvector centrality, indicating the consistent hub host of infection transmission in the personal contact network, which is more central to the main pattern of contact distances among all of the individual hosts (degree of inequality was 99.18% of the maximum possible; Table 2).
T167 21240-21276 Sentence denotes Egocentric personal contract network
T168 21277-21397 Sentence denotes To understand the modular structures of this disease contact matrix, egocentric personal contact networks were examined.
T169 21398-21630 Sentence denotes The ego networks of personal contacts consist of both a focal infectious host (ego) and a set of susceptible hosts (alters), which received infectious contacts from the ego, and a measurement of contact relations among these alters.
T170 21631-21808 Sentence denotes The results showed that host #14 was the infectious individual host having the largest egocentric network, and 74 individual hosts had established infectious contacts (Table 3).
T171 21809-22089 Sentence denotes Among the 74 susceptible hosts in the network of host #14, four were direct person-to-person transmitted infections out of 5,402 possible infectious contact relations, which confirmed the presence of 0.07% of all possible contact relations of infection transmission between hosts.
T172 22090-22209 Sentence denotes The results of other infectious hosts also show the very fragmented nature of egocentric contact network relationships.
T173 22210-22416 Sentence denotes Thus, the spread of the MERS infection by hub infectious hosts was more likely in a small-world network, where the individual hosts were not tightly connected in local structures (see Supplementary Fig. 4).
T174 22417-22501 Sentence denotes Table 3 Egocentric structural metrics for the top-5 highest degree infectious hosts.
T175 22502-22536 Sentence denotes Rank Hosts Size Ties Pairs Density
T176 22537-22557 Sentence denotes 1 M14 74 4 5402 0.07
T177 22558-22576 Sentence denotes 2 M1 31 5 930 0.54
T178 22577-22596 Sentence denotes 3 M16 23 1 506 0.20
T179 22597-22615 Sentence denotes 4 M76 10 0 90 0.00
T180 22616-22633 Sentence denotes 5 M15 6 0 30 0.00
T181 22635-22685 Sentence denotes Analysis of core-periphery structure and cut-point
T182 22686-22804 Sentence denotes A core-periphery structure based on the density of connections comprises at least a pair of core and periphery blocks.
T183 22805-22902 Sentence denotes The core block has many intra-block connections, whereas the peripheral block has relatively few.
T184 22903-22963 Sentence denotes Contact density was higher for core-to-core relations (0.3).
T185 22964-23283 Sentence denotes Each core host contacted, on average, 30% of the other hosts in the core of this network and tended to transmit the MERS infection more densely among themselves, representing six identified hosts at a higher risk of infection: high out-degree hosts #1, #9, and #14 with high in-degree hosts #37, #46, and #67 (Table 4).
T186 23284-23369 Sentence denotes Core hosts were also a source of infection transmission for peripheral hosts (0.108).
T187 23370-23518 Sentence denotes However, this relation was significantly looser than the one at the core position (core hosts tended not to receive infection from peripheral hosts:
T188 23519-23526 Sentence denotes 0.002).
T189 23527-23666 Sentence denotes This shows that hosts in the core transmitted 54 times as many MERS infections to peripheral hosts as peripheral hosts infected core hosts.
T190 23667-23911 Sentence denotes In other words, the personal contact clusters at the core position via hub hosts were considered to be very dense local structures, where a small number of tightly embedded hosts could cause the MERS infection to spread locally in a population.
T191 23912-23972 Sentence denotes Table 4 Density matrix for categorical core-periphery model.
T192 23973-23988 Sentence denotes Core* Periphery
T193 23989-24013 Sentence denotes Core (Nc = 6)* 0.3 0.108
T194 24014-24046 Sentence denotes Periphery (Np = 156) 0.002 0.003
T195 24047-24085 Sentence denotes *Hosts #1, #9, #14, #37, #46, and #67.
T196 24086-24359 Sentence denotes Additionally, a cut-point analysis as an indicator of network’s weak spots vulnerable to disruptions in the infection transmission flow was performed to determine the key hosts who could act as brokers among otherwise disconnected personal contact relations in the network.
T197 24360-24570 Sentence denotes Around 141 blocks into which cut-points divided the network structure were identified, with 17 cut-point hosts {hosts #1, #3, #6, #14, #15, #16, #17, #36, #50, #52, #76, #118, #119, #123, #132, #135, and #143}.
T198 24571-24728 Sentence denotes If those 17 hosts were removed from the personal contact relation, the network structure would be fragmented into 141 unconnected parts (red dots in Fig. 1).
T199 24729-24958 Sentence denotes We see that a number of hub infectious hosts with top-ranked centrality were in cut-point positions, suggesting that they may have been targeted for control strategies to limit the spread of the MERS infection in this population.
T200 24960-24980 Sentence denotes Nosocomial infection
T201 24981-25147 Sentence denotes We identified 43 healthcare facilities where patients sought treatment for respiratory symptoms related to the MERS infection between the months of May and July 2015.
T202 25148-25267 Sentence denotes We assumed a probability of the introduction of the MERS virus proportional to the daily patient flow of each hospital.
T203 25268-25479 Sentence denotes We then observed the timeline of the MERS epidemic, as reported by the Ministry of Health and Welfare, and calculated the probability of distributions for the time and place of the introduction of MERS in Korea.
T204 25480-25634 Sentence denotes Figure 2a shows the posterior distribution for MERS introductions in 16 out of the 43 major healthcare facilities initiating a hospital-acquired outbreak.
T205 25635-25738 Sentence denotes Figure 2b,c show the generated posterior distribution of the introduction time and place, respectively.
T206 25739-25816 Sentence denotes These are indicative of a change in the epidemic spreading behaviour of MERS.
T207 25817-27052 Sentence denotes Figure 2 Distribution of MERS introductions as a function of time and place. (a), The posterior distribution for both date and place of MERS infection in 16 major healthcare facilities between May and July 2015. (b), The posterior distribution for time (date) of MERS introductions. (c), The posterior distribution for place (healthcare facilities) of MERS introductions. (d), The posterior distribution for MERS introductions and recoveries. *ACH (Asan Choongmoo Hospital, Asan, located in the centralwest of Korea); ASC (Asan Seoul Clinic, Asan); BJH (Joeun Gang-An Hospital, Busan, southeast); DDH (Dae Cheong Hospital, Daejeon, central); DKH (KonYang University Hospital, Daejeon); GAMC (Gangneung Medical Center, Gangneung, east central); HHC (Hallym University Medical Center, Hwaseong, northwest), PBH (Pyeongtaek Bagae Hospital, Pyeongtaek, northwest); PGH (Pyeongtaek Goodmorning Hospital, Pyeongtaek); PMH (Pyeongtaek St. Mary’s Hospital, Pyeongtaek); SAC (Seoul Asan Medical Center, Seoul, northwest); SKC (KonKuk University Medical Center, Seoul); SKH (KyungHee University Hospital at Gangdong, Seoul); SSC (Samsung Medical Center, Seoul); SYH (365 Seoul Yeol Lin Hospital, Seoul); SYMH (Yeoido St. Mary’s Hospital, Seoul).
T208 27053-27316 Sentence denotes The largest posterior distribution was associated with an introduction of hospital-acquired outbreak in SSC (the full name of hospital abbreviations in Fig. 2) on June 7, 2015, and over 60% of infection transmission was more likely to occur between June 6 and 16.
T209 27317-27389 Sentence denotes The places where MERS was most likely to be introduced were SSC and PMH.
T210 27390-27664 Sentence denotes Although SSC generated the highest probability of MERS transmission between infected and susceptible individuals, the earliest outbreak was observed in PMH on May 21, which failed to control MERS transmission from the index patient (host #1) to other susceptible neighbours.
T211 27665-27860 Sentence denotes As shown in Fig. 2d, the epidemic in most healthcare facilities declined after June 7, because the sudden outbreak of MERS produced an epidemic time curve with a sudden onset and a rapid decline.
T212 27861-28151 Sentence denotes The epidemic curve was suggestive of a mixed outbreak pattern, in which individual hosts were exposed to the common source (or point source) over a short time and spread infection to others via ongoing person-to-person contact with an average incubation period of 6.8 days (range 4–8 days).
T213 28153-28192 Sentence denotes Network centrality of hospital contacts
T214 28193-28458 Sentence denotes Analyzing the contact relationships causing nosocomial infection and identifying the underlying network structure of hospital contact patterns are significant in defining how the nosocomial infection was structurally constructed and how the disease was transmitted.
T215 28459-28598 Sentence denotes We examined network structures representing hospital contact relations weighted by locations of individual hosts and healthcare facilities.
T216 28599-28751 Sentence denotes Accordingly, the links from infection transmission consisted of two nodes: individual hosts and hospitals they visited for MERS diagnosis and treatment.
T217 28752-28894 Sentence denotes The exposed contacts through which the infection could spread are represented by the co-presence of two individual hosts in the same hospital.
T218 28895-29116 Sentence denotes The bipartite graph of all pairs of nodes shows that eight healthcare facilities (SSC, PMH, DDH, DKH, PGH, SKH, HHC, and SKC) were more central than any of the individual hosts on the degree centrality measures (Table 5).
T219 29117-29253 Sentence denotes For instance, DKH had 14 links to MERS infection and transmission, whereas hosts #1 and #14 had only four and three links, respectively.
T220 29254-29350 Sentence denotes It also shows that SSC was the most central and was followed by PMH, DDH, and DKH in this order.
T221 29351-29460 Sentence denotes In other words, SSC, PMH, DDH, and DKH played key roles in the transmission of MERS via individual movements.
T222 29461-29819 Sentence denotes There was more consistency among the healthcare facility scores, where SSC, PMH, DDH, and DKH had the highest scores across the centrality measures except in the closeness centrality, where DDH and DKH (where other 14 peripheral hosts visited and infected, respectively) were replaced by PGH in which hub host #14 had connection and passed MERS to host #118.
T223 29820-30027 Sentence denotes As the eigenvector shows in this result, the largest given to SSC (0.996) provided further evidence of the likelihood of increasing the contact event among individual hosts with MERS infection possibilities.
T224 30028-30095 Sentence denotes Table 5 Centrality measure scores for the top-20 hospital contacts.
T225 30096-30141 Sentence denotes Size Degree Betweenness Closeness Eigenvector
T226 30142-30172 Sentence denotes SSC 95 0.420 0.200 1.214 0.996
T227 30173-30203 Sentence denotes PMH 37 0.164 0.131 1.029 0.053
T228 30204-30234 Sentence denotes DDH 14 0.062 0.031 0.665 0.001
T229 30235-30265 Sentence denotes DKH 14 0.062 0.027 0.662 0.001
T230 30266-30295 Sentence denotes PGH 9 0.040 0.019 0.866 0.026
T231 30296-30325 Sentence denotes SKH 7 0.031 0.019 0.709 0.023
T232 30326-30355 Sentence denotes HHC 7 0.031 0.013 0.638 0.001
T233 30356-30385 Sentence denotes SKC 5 0.022 0.009 0.701 0.011
T234 30386-30416 Sentence denotes M173 5 0.022 0.009 0.578 0.002
T235 30417-30445 Sentence denotes M1 4 0.018 0.040 1.106 0.110
T236 30446-30476 Sentence denotes M118 4 0.018 0.016 0.927 0.107
T237 30477-30506 Sentence denotes M76 4 0.018 0.023 0.903 0.106
T238 30507-30536 Sentence denotes M89 4 0.018 0.007 0.872 0.105
T239 30537-30566 Sentence denotes M90 4 0.018 0.007 0.872 0.105
T240 30567-30597 Sentence denotes M115 4 0.018 0.007 0.872 0.105
T241 30598-30628 Sentence denotes M178 4 0.018 0.011 0.798 0.008
T242 30629-30659 Sentence denotes GAMC 4 0.018 0.002 0.679 0.033
T243 30660-30690 Sentence denotes M119 4 0.018 0.009 0.530 0.000
T244 30691-30720 Sentence denotes M14 3 0.013 0.039 1.110 0.110
T245 30721-30750 Sentence denotes M16 3 0.013 0.057 0.821 0.006
T246 30751-30999 Sentence denotes Looking at the individual hosts from the bipartite method, host #173, who had the highest score compared with that of other hosts, visited five healthcare facilities, four of which were low-centrality hospitals and one (SKH) was a central hospital.
T247 31000-31308 Sentence denotes It was not as influential as individual hosts such as host #1, who visited two low-centrality hospitals and two central hospitals (SSC, PMH); host #14, who visited just three central hospitals (SSC, PMH, PGH); and host #76, who visited one low-centrality hospital and three central hospitals (SSC, SKH, SKC).
T248 31309-31588 Sentence denotes In this case, we might expect infectious hub hosts #1 and #14 (along with #76) to have higher centrality scores (i.e., betweenness and closeness) than those of other hosts because they made contact with hosts in the majority of both high-and low-centrality healthcare facilities.
T249 31589-31894 Sentence denotes We can see the network as comprising four clusters, and these relations were connected by having healthcare facilities in common (for instance, the #1 to #14 relation had the healthcare facility PMH in common; the #14 to #76 relation had SSC in common; the #76 to #173 relation had SKH in common; Fig. 3).
T250 31895-32015 Sentence denotes This implies that there was a patterned MERS risk for the individual hosts affiliating with these healthcare facilities.
T251 32016-32093 Sentence denotes Figure 3 Bipartite graph of MERS infection transmission (hosts-by-hospitals).
T252 32094-32423 Sentence denotes Structural layout of the network clustered together by different co-occurrence frequency levels of individual hosts and healthcare facilities (small clusters are merged into larger clusters based on modularity function), where red, green and blue nodes denote core nosocomial linkages, and yellow nodes denote periphery linkages.
T253 32424-32458 Sentence denotes Image was created using VOSviewer.
T254 32460-32513 Sentence denotes Core-periphery structure of hospital contact patterns
T255 32514-32624 Sentence denotes A core-periphery analysis was conducted to further explore the network structure of hospital contact patterns.
T256 32625-32891 Sentence denotes The result shows a core composed of 96 individual hosts including high out-degree hosts #1, #16 and #76 with high in-degree hosts #10, #39, #46, #74, and #107, who were all very likely to come in contact with three healthcare facilities (SSC, PMH, and DKH; Table 6).
T257 32892-33075 Sentence denotes In other words, the core healthcare facilities were more likely to increase the contact event among individual hosts with MERS risk, because they were all visited by 96 or more hosts.
T258 33076-33145 Sentence denotes The peripheral hospitals had 37 or fewer (partition not shown) hosts.
T259 33146-33274 Sentence denotes The remainder of the hosts was grouped into the periphery as both presenting less frequently and having few hospitals in common.
T260 33275-33453 Sentence denotes A considerable number of healthcare facilities were also grouped as peripheral in the sense that they were less visited by infectious hosts, and these hosts had little in common.
T261 33454-33525 Sentence denotes Table 6 Density matrix for the 2-mode categorical core-periphery model.
T262 33526-33574 Sentence denotes Core(Ncs = 3: SSC, PMH, DKH) Periphery(Nps = 40)
T263 33575-33602 Sentence denotes Core (Nca = 96) 0.285 0.016
T264 33603-33636 Sentence denotes Periphery (Npa = 87)* 0.240 0.010
T265 33637-33711 Sentence denotes *Hosts #2, #133, and #145 were exempted from hospital-acquired infections.
T266 33712-33853 Sentence denotes On the other hand, a host in the core visited either one or more core hospitals or one core hospital and at least three peripheral hospitals.
T267 33854-34055 Sentence denotes For instance, nodes that interacted with host #1 were on the core side, whereas nodes that were likely to interact with host #14 were unexpectedly located in the same topological area of the periphery.
T268 34056-34263 Sentence denotes Host #1 localised in a cluster containing another three healthcare facilities (SSC, PMH, and DKH), which were observed to associate with major nosocomial infections (see red, green, and blue dots in Fig. 3).
T269 34264-34367 Sentence denotes Interestingly, the SSC cluster was connected via the shared hub host #1 to a cluster consisting of PMH.
T270 34368-34501 Sentence denotes Additionally, PGH and HHC were present in the periphery and localised to a host #14 partition of the network (yellow dots in Fig. 3).
T271 34502-34798 Sentence denotes This implies that, based on the idea of the structural equivalence32,40, hosts #1 (at the core of the network) and #14 (at the periphery) were not structurally equivalent, although they were highly connected, because they occupied unequal positions or had non-identical relationships with alters.
T272 34799-35022 Sentence denotes The result also shows that core hosts presented themselves less frequently (0.016) at peripheral healthcare facilities, whereas peripheral hosts presented themselves somewhat more heavily (0.24) at core hospitals (Table 6).
T273 35024-35034 Sentence denotes Discussion
T274 35035-35223 Sentence denotes Network analysis tools for exploring the infectious contact network provides a key opportunity to uncover the topologies of the contact networks of individuals in the transmission of MERS.
T275 35224-35410 Sentence denotes However, the epidemiological topology of the contact network of infectious individuals and healthcare facilities has not, until now, been systematically investigated in relation to MERS.
T276 35411-35675 Sentence denotes This underscores the necessity of understanding the structural properties in contact networks, particularly as infection transmission correlates to the super-spreading characteristic of epidemics and the prevalence of nosocomial infection in healthcare facilities.
T277 35676-35924 Sentence denotes The results show that a small number of healthcare facilities where hub infectious hosts tended to visit for a limited time for MERS diagnosis and treatment had an excessively certain influence on the early spread of MERS throughout the population.
T278 35925-36121 Sentence denotes The MERS epidemic was more likely to be associated with the increased probability of contact events among individual hosts, and nosocomial infections rapidly increased the proportions of epidemic.
T279 36122-36367 Sentence denotes Additionally, personal contacts initiated by super-spreaders were considered as potential risk factors for the persistence of the MERS infection on networks and contributed to the epidemic onset with high transmissibility in healthcare settings.
T280 36368-36593 Sentence denotes In other words, both nosocomial and personal contacts might have played a dominant role in enhancing the risk of the transmission of MERS and subsequent infection in healthcare facilities in a relatively short period of time.
T281 36594-36862 Sentence denotes This implies that infection prevention and control policies to limit the spread of diseases should aim at targeted surveillance programs and control strategies by investigating and monitoring the introduction and spread of infectious diseases through contact networks.
T282 36863-36923 Sentence denotes Our findings contribute to previous studies in several ways.
T283 36924-37081 Sentence denotes It highlights the role of network analysis tools in analysing the epidemiological topologies of infectious diseases through comprehensive analytical methods.
T284 37082-37258 Sentence denotes It also underscores the need for further research to develop different epidemiological models for a broader understanding of the structural properties of epidemic transmission.
T285 37259-37536 Sentence denotes In addition, we reveal that the small-world network with scale-free dynamics is highly relevant to the emergence of complexification of the disease-spreading dynamics, and tends to minimise the average path distance over all the pairs of infectious and susceptible individuals.
T286 37537-37771 Sentence denotes Finally, notwithstanding the relatively high prevalence and probability of person-to-person disease transmission based on the movement and relationships of individuals, our results confirmed that MERS was often a nosocomial infection.
T287 37772-37885 Sentence denotes Based on results, we suggest clear implications on strategy-driven interventions to prevent disease transmission.
T288 37886-38006 Sentence denotes First, prevention and control efforts should target individuals with the highest likelihood of transmitting the disease.
T289 38007-38179 Sentence denotes Our results justify the interventions directed towards investigating and monitoring the introduction and subsequent spread of diseases by highly infectious super-spreaders.
T290 38180-38507 Sentence denotes To mitigate the super-spreading of the MERS among people in homes and in communities, home care for patients with mild symptoms should be provided under close medical observation, after patients and family caregivers must have received appropriate training on personal hygiene, basic infection prevention, and control measures.
T291 38508-38674 Sentence denotes However, patients with worsening conditions should seek prompt medical attention following a monitor of their health status for 14 days after the exposure event41,42.
T292 38675-38974 Sentence denotes Secondly, our analysis reveals that relatively large tertiary hospitals have higher rates of MERS transmission than small community hospitals, because, in addition to poor disease control facilities, they typically have large numbers of patients and visitors who are engaged in doctor shopping43,44.
T293 38975-39078 Sentence denotes Therefore, it is necessary to put effective quarantine and adequate facility ventilation on the agenda.
T294 39079-39231 Sentence denotes Furthermore, to improve the response activities of hospital staff in infection prevention and control, timely education and training must be provided43.
T295 39232-39428 Sentence denotes It is also necessary that, regardless of the diagnosis, healthcare facilities should always share essential information in a timely manner with other facilities at the early stage of the outbreak.
T296 39429-39660 Sentence denotes Finally, until more is understood about MERS, the government should provide reliable and timely information to the public, and establish an efficient disease-control system as preventive measures against the initial spread of MERS.
T297 39661-39732 Sentence denotes Despite the comprehensive findings, this study has several limitations.
T298 39733-39830 Sentence denotes First, it is difficult to control any confounding factors that could influence the study results.
T299 39831-40006 Sentence denotes Information, such as the determinants of the patient’s choice of healthcare facilities, are frequently not available, which can result in bias in the contact network analysis.
T300 40007-40122 Sentence denotes Second, this study is based on contact network relationships as traced among individual hosts infected by the MERS.
T301 40123-40409 Sentence denotes Therefore, it is necessary for future research to identify and analyse the patients in relation to the different patterns associated with both modes of transmission, person-to-person contact transmission and nosocomial infection, to provide a more profound insight into how they differ.
T302 40410-40485 Sentence denotes Furthermore, the study is limited to the MERS-infected population in Korea.
T303 40486-40545 Sentence denotes Therefore, the generalisability of findings may be limited.
T304 40546-40739 Sentence denotes We believe that the limitations of this study can be overcome by comparing various epidemiology models that demonstrate the spread of infections with sufficiently large evidence-based datasets.
T305 40741-40766 Sentence denotes Supplementary information
T306 40768-40793 Sentence denotes Supplementary information

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 4678-4699 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947

2_test

Id Subject Object Predicate Lexical cue
32152361-9623998-138518102 1567-1568 9623998 denotes 5
32152361-10521342-138518103 1591-1592 10521342 denotes 6
32152361-27433389-138518104 2053-2054 27433389 denotes 8
32152361-15466494-138518105 2055-2056 15466494 denotes 9
32152361-9623998-138518106 2691-2692 9623998 denotes 5
32152361-21737332-138518107 3197-3199 21737332 denotes 13
32152361-26088634-138518108 3642-3644 26088634 denotes 14
32152361-26468744-138518109 3645-3647 26468744 denotes 15
32152361-26468744-138518110 4188-4190 26468744 denotes 15
32152361-26194875-138518111 6287-6289 26194875 denotes 18
32152361-26883965-138518112 7966-7968 26883965 denotes 25
32152361-20585380-138518113 10895-10897 20585380 denotes 29
32152361-9623998-138518114 12392-12393 9623998 denotes 5
32152361-10521342-138518115 16413-16414 10521342 denotes 6
32152361-26883965-138518116 16415-16417 26883965 denotes 25
32152361-751264-138518117 16418-16420 751264 denotes 35
32152361-28153558-138518118 18409-18411 28153558 denotes 36
32152361-28193880-138518118 18409-18411 28193880 denotes 36
32152361-16292310-138518118 18409-18411 16292310 denotes 36
32152361-29502517-138518119 38968-38970 29502517 denotes 43
32152361-31089148-138518120 38971-38973 31089148 denotes 44
32152361-29502517-138518121 39228-39230 29502517 denotes 43