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PMC:7062829 / 13690-16615 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
191 244-248 Disease denotes MERS MESH:D018352
197 2099-2103 Disease denotes MERS MESH:D018352
198 2104-2113 Disease denotes Infection MESH:D007239
199 2153-2162 Disease denotes infection MESH:D007239
200 2509-2513 Disease denotes MERS MESH:D018352
201 2514-2523 Disease denotes infection MESH:D007239
205 1487-1496 Disease denotes infection MESH:D007239
206 1832-1840 Disease denotes infected MESH:D007239
207 1964-1974 Disease denotes infections MESH:D007239

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 890-895 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T49 1487-1496 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T50 1661-1671 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T51 1964-1974 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T52 2104-2113 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T53 2153-2162 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T54 2514-2523 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T70 83-84 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 110-111 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T72 321-322 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T73 708-711 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T74 773-774 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T75 844-845 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 983-984 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 1015-1016 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 1446-1449 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T79 1753-1755 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T80 2286-2287 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T81 2309-2310 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 2346-2347 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T83 2556-2557 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T84 2605-2606 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 1626-1631 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T3 1774-1779 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T4 1897-1902 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T5 2808-2813 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T92 0-31 Sentence denotes Network property of small-world
T93 32-133 Sentence denotes Every node can be reached from every other node by a small number of steps in a small-world network5.
T94 134-317 Sentence denotes The personal contact network was assumed to have distinct clusters of individual hosts exposed to the path of MERS transmission, whereas the geodesics among these clusters were small.
T95 318-476 Sentence denotes In a given network of personal contacts, the overall network density of 0.014 implies that only 1.4% of potential personal connections were actually realized.
T96 477-731 Sentence denotes The average path length was 3.131 (disregarding the directness of relationships), and the average clustering coefficient was 0.258, which is significantly larger than the value for the corresponding classical random network, 1.117/162 = ∼0.007 (Table 1).
T97 732-815 Sentence denotes Thus, the network was considered to have a small-world property (small-world index:
T98 816-918 Sentence denotes 1.046) with the presence of a small number of highly connected hub hosts (scale-free characteristics).
T99 919-1053 Sentence denotes Additionally, the distance-based cohesion of 0.355 demonstrated a large fragmented network with a relatively weak structural cohesion.
T100 1054-1175 Sentence denotes That is, the network would become disconnected if specific hosts who acted as shortcuts between the two clusters removed.
T101 1176-1234 Sentence denotes Table 1 Structural properties of personal contact network.
T102 1235-1249 Sentence denotes Category Value
T103 1250-1271 Sentence denotes Network Density 0.014
T104 1272-1308 Sentence denotes Average Clustering Coefficient 0.258
T105 1309-1334 Sentence denotes Average Path Length 3.131
T106 1335-1378 Sentence denotes Distance-based Cohesion (Compactness) 0.355
T107 1379-1402 Sentence denotes Small-World Index 1.046
T108 1403-1423 Sentence denotes Average Degree 1.117
T109 1424-1449 Sentence denotes Total number of Nodes 162
T110 1450-1615 Sentence denotes As shown in Fig. 1, the relations of infection transmission within the personal contact network are visually displayed by three sub-groups based on k-core regions34.
T111 1616-1762 Sentence denotes The first group, marked in red, contains hub infectious hosts (#14, #1), as well as the high in-degree susceptible hosts (#37, #39, #9, #11, #12).
T112 1763-1886 Sentence denotes The second group, marked in blue, comprises susceptible hosts mainly infected through direct contact with hosts #14 and #1.
T113 1887-2060 Sentence denotes The third group, marked in black, includes the most peripheral indirect host infections through interpersonal transmission (see Supplementary Figs. 1–3 for further details).
T114 2061-2127 Sentence denotes Figure 1 Personal Contact Patterns in MERS Infection Transmission.
T115 2128-2285 Sentence denotes The overall relations of infection transmission within the personal contact network; three connected sub-structures are identified with the k-core algorithm.
T116 2286-2465 Sentence denotes A k-core is defined as a hierarchical set of hosts based on a range for each number of contacts they each have according to the degree of connection the hosts have in the network.
T117 2466-2524 Sentence denotes All nodes represent hosts having contacted MERS infection.
T118 2525-2713 Sentence denotes Thus, all hosts that generated a given transmission event to k other hosts form a sub-structure, and any host that generated multiple transmission events will link multiple sub-structures.
T119 2714-2925 Sentence denotes Colors correspond to the k-core partition (red: the first, blue: the second, black: the third group) and the size of the nodes in each k-core is proportional to the individual node eigenvector centrality values.

2_test

Id Subject Object Predicate Lexical cue
32152361-9623998-138518114 131-132 9623998 denotes 5