> top > docs > PMC:7061470 > annotations

PMC:7061470 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 4-21 Species denotes novel coronavirus Tax:2697049
4 98-113 Species denotes new coronavirus Tax:2697049
5 501-507 Disease denotes deaths MESH:D003643
12 1022-1039 Species denotes novel coronavirus Tax:2697049
13 1072-1081 Species denotes 2019-nCoV Tax:2697049
14 1086-1096 Species denotes SARS-CoV-2 Tax:2697049
15 1059-1067 Disease denotes COVID-19 MESH:C000657245
16 1313-1317 Disease denotes died MESH:D003643
17 1482-1486 Disease denotes died MESH:D003643
21 1794-1800 Species denotes people Tax:9606
22 2005-2011 Species denotes people Tax:9606
23 1816-1824 Disease denotes infected MESH:D007239
27 4737-4745 Species denotes patients Tax:9606
28 4770-4778 Species denotes patients Tax:9606
29 3798-3804 Disease denotes deaths MESH:D003643
35 5006-5021 Species denotes new coronavirus Tax:2697049
36 5255-5261 Species denotes people Tax:9606
37 4826-4835 Disease denotes mortality MESH:D003643
38 4958-4967 Disease denotes mortality MESH:D003643
39 5130-5139 Disease denotes mortality MESH:D003643
41 5797-5803 Disease denotes deaths MESH:D003643
44 6366-6375 Disease denotes mortality MESH:D003643
45 6388-6410 Disease denotes coronavirus infections MESH:D018352
47 6623-6631 Disease denotes COVID-19 MESH:C000657245
49 7186-7194 Disease denotes COVID-19 MESH:C000657245
52 7733-7742 Species denotes 2019-nCoV Tax:2697049
53 7747-7755 Disease denotes COVID-19 MESH:C000657245
55 8279-8289 Species denotes collection Tax:1768868

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T28 7186-7194 SP_7 denotes COVID-19
T27 5757-5769 GO:0065007 denotes surveillance
T26 5797-5803 GO:0016265 denotes deaths
T25 6388-6399 NCBITaxon:11118 denotes coronavirus
T24 6623-6631 SP_7 denotes COVID-19
T23 6758-6764 GO:0007601 denotes visual
T22 6970-6976 GO:0007601 denotes visual
T21 6977-6989 GO:0065007 denotes surveillance
T20 3172-3184 GO:0065007 denotes surveillance
T19 3798-3804 GO:0016265 denotes deaths
T18 3999-4005 GO:0007601 denotes visual
T17 4923-4928 NCBITaxon:10239 denotes virus
T16 5010-5021 NCBITaxon:11118 denotes coronavirus
T15 5255-5261 NCBITaxon:9606 denotes people
T14 1028-1039 NCBITaxon:11118 denotes coronavirus
T13 1059-1067 SP_7 denotes COVID-19
T12 1072-1081 SP_7 denotes 2019-nCoV
T11 1086-1096 SP_7 denotes SARS-CoV-2
T10 1313-1317 GO:0016265 denotes died
T9 1482-1486 GO:0016265 denotes died
T8 1784-1789 CHEBI:23888;CHEBI:23888 denotes drugs
T7 1794-1800 NCBITaxon:9606 denotes people
T6 2005-2011 NCBITaxon:9606 denotes people
T3 102-113 NCBITaxon:11118 denotes coronavirus
T2 262-270 GO:0007612 denotes learning
T1 501-507 GO:0016265 denotes deaths
T4 44-51 GO:0007612 denotes learned
T5 10-21 NCBITaxon:11118 denotes coronavirus

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 1059-1067 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 1086-1094 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T3 6400-6410 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T4 6623-6631 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 7186-7194 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T6 7747-7755 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 7760-7768 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T8 8148-8152 Disease denotes LI H http://purl.obolibrary.org/obo/MONDO_0009415

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 253-256 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 900-912 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T3 1220-1222 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T4 1230-1231 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 1357-1360 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 1411-1412 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 1488-1492 http://purl.obolibrary.org/obo/CLO_0053799 denotes 4, 5
T8 1667-1668 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 2279-2280 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 2647-2659 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T11 2846-2849 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 3066-3069 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T13 4534-4536 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T14 4923-4928 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 4934-4935 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 5173-5174 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 5469-5472 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T18 5483-5484 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 5546-5547 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 5608-5609 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 6178-6183 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T22 6244-6248 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T23 6639-6647 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively
T24 6756-6757 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 6961-6962 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 7294-7297 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T27 7467-7470 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T28 7789-7792 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T29 7894-7906 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T30 7963-7966 http://purl.obolibrary.org/obo/CLO_0002697 denotes Dan
T31 8148-8150 http://purl.obolibrary.org/obo/CLO_0007314 denotes LI

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 1784-1789 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T2 3407-3409 Chemical denotes TV http://purl.obolibrary.org/obo/CHEBI_75193
T3 8148-8150 Chemical denotes LI http://purl.obolibrary.org/obo/CHEBI_74540

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 262-270 http://purl.obolibrary.org/obo/GO_0007612 denotes learning
T2 4989-4998 http://purl.obolibrary.org/obo/GO_0016032 denotes virulence
T3 4989-4998 http://purl.obolibrary.org/obo/GO_0009405 denotes virulence

2_test

Id Subject Object Predicate Lexical cue
32166128-32004427-45091844 1201-1202 32004427 denotes 2

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-83 Sentence denotes The novel coronavirus outbreak: what can be learned from China in public reporting?
T2 85-93 Sentence denotes Abstract
T3 94-149 Sentence denotes The new coronavirus outbreak gets everyone’s attention.
T4 150-246 Sentence denotes China’s national actions against the outbreak have contributed great contributions to the world.
T5 247-334 Sentence denotes China has been learning from practice for better reporting and is fast to adapt itself.
T6 335-437 Sentence denotes In this article we discuss China’s practice in public reporting and its implications to global health.
T7 438-580 Sentence denotes Confirmed cases, dynamic suspected cases, recovered cases, and deaths have been reported both in accumulative numbers and their daily updates.
T8 581-717 Sentence denotes Some ratio indictors reporting (fatality rate, recovery rate, etc.), trend reporting, and global surveillance have been applied as well.
T9 718-754 Sentence denotes Some improvements can still be made.
T10 755-854 Sentence denotes It is necessary to further explore the influential factors behind the indicators for interventions.
T11 855-978 Sentence denotes Recommendations are made to the World Health Organization and other countries for better public reporting and surveillance.
T12 980-990 Sentence denotes Background
T13 991-1128 Sentence denotes The storm-like outbreak of the novel coronavirus epidemic, named as COVID-19, or 2019-nCoV, or SARS-CoV-2, gets everyone’s attention [1].
T14 1129-1331 Sentence denotes Since the first case was reported in Wuhan (China) on December 8, 2019 [2], until February 27, 2020, a total of 78,497 cases have been confirmed, 32,495 cases recovered and 2744 cases died in China [3].
T15 1332-1494 Sentence denotes Up to date, the outbreak has already been spread to 37 countries worldwide and a total of 2918 cases have been confirmed, 287 recovered, and 43 cases died [4, 5].
T16 1495-1630 Sentence denotes Had it not for the whole society effort led by the Chinese government, the situation would be much worse in China and around the world.
T17 1631-1748 Sentence denotes For better global actions, there is a urgent need for public reporting among Nations and further global surveillance.
T18 1749-1933 Sentence denotes Moreover, as there lacks effective drugs and people are easy to be infected via contact, droplets, etc., worries and panic have been aroused in the public in China and other countries.
T19 1934-2172 Sentence denotes Scientifically framed epidemic information about the outbreak can help people understand the developing situation, encourage the whole society to work together against the epidemic, and help prevent data from deliberate misinterpretation.
T20 2173-2325 Sentence denotes In theory, all relevant information can be reported to support decision making, while such approach takes a lot of time and make it impossible to do so.
T21 2326-2432 Sentence denotes Therefore, for timely public reporting, selecting the most representive indicators are of most importance.
T22 2433-2521 Sentence denotes China is the first country to fight the outbreak and have accumulated lots of exprience.
T23 2522-2764 Sentence denotes Its experience to report the indictors information to the public on daily basis is very useful not only for the World Health Organization (WHO) to strengthen global surveillance, but also for other countries to improve their public reporting.
T24 2766-2801 Sentence denotes Current reporting progress in China
T25 2802-2896 Sentence denotes Since the outbreak, reporting to the public has been developing from exploration all the time.
T26 2897-3455 Sentence denotes From one side, governments of all levels announce new updates each day and reflect all indicators information via the Chinese Center for Disease Control and Prevention (CDC) [3]; on the other side, many domestic search engines, portal websites, etc. have developed their own surveillance systems respectively and update information each day based on the newest data officially from governments of all levels, which include case number indicators, trend monitoring, news from various sources (such as webpages, TV, newspapers, blogs, broadcasts, ect.) [6, 7].
T27 3456-3556 Sentence denotes Each of them have their own features and have attracted huge number of visits each day for concerns.
T28 3557-3650 Sentence denotes Moreover, the reporting not only include information updates about China, but also the world.
T29 3651-3919 Sentence denotes Further analysis of the government reports indicate that indicators such as confirmed cases, suspected cases, recovered cases, and total number of deaths are all reported in total numbers along with their daily updates respectively based on provincial and city levels.
T30 3920-4072 Sentence denotes These data together with the updates from the WHO have provided good basis for visual reporting at city, provincial, national, and international levels.
T31 4073-4214 Sentence denotes Ratio analyses such as case fatality rate, recovery rate, etc. are applied to reflect the whole progress of various effort and interventions.
T32 4215-4318 Sentence denotes These rates are further classified as Hubei, outside Hubei, whole China, etc. for comparison in curves.
T33 4319-4806 Sentence denotes It should be noted that there are lots of influential factors affecting the fatality and recovery rates [8], for example, the fatility rate in Hubei is much higher than other provinces (4.03% vs 0.80%, by Feburuary 27, 2020), which can be partly explained that, even though Hubei is abundant of health resources, but still lacks enough medical resources to provide timely and effective treatments to the hug number of patients compared with much less patients in other Chinese provinces.
T34 4807-4879 Sentence denotes Incidence and case mortality rate can both be meaningful to be reported.
T35 4880-5022 Sentence denotes Incidence indicates the infectivity of the virus over a time period, and case mortality rate can reflect the virulence of the new coronavirus.
T36 5023-5065 Sentence denotes Both are yet to be reflected in reporting.
T37 5066-5302 Sentence denotes It will be much helpful to report up to date incidence and case mortality rate for daily surveillance, and a trend curve can be depicted, which can indicate the cumulative risks and remind people to end the outbreak as soon as possible.
T38 5304-5334 Sentence denotes Implications for global health
T39 5335-5564 Sentence denotes Based on China’s advantage in information communications technology (ICT), the entreprenurship of technology enterprises, etc., China has developed a relatively complete online reporting system to the public in a very short time.
T40 5565-5695 Sentence denotes However, with the outbreak developing into a global pandemic, many countries are still underestimating the impact of the outbreak.
T41 5696-5782 Sentence denotes The following aspects can be highlited for public reporting, surveillance and actions:
T42 5783-5848 Sentence denotes The number of deaths can further be classified by gender and age.
T43 5849-5942 Sentence denotes In this way the information will be much helpful to further identify susceptible populations.
T44 5943-6184 Sentence denotes According to China’s practice, the number of confirmed cases is better to include only laboratory confirmed cases, and all clinically diagnostic cases should all be included into suspected cases before they are confirmed by laboratory tests.
T45 6185-6325 Sentence denotes However, this creates the difficulty for countries lacking test capabilities and they will need assistance from the international community.
T46 6326-6531 Sentence denotes Including up to date incidence and case mortality rate of the coronavirus infections based on the total population will help the general public better assess the impact and reduce overreacted social panic.
T47 6532-6693 Sentence denotes For public reporting, countries especially those with suspected and confirmed cases of the COVID-19 should actively report to the WHO for further collaborations.
T48 6694-6863 Sentence denotes Further relevant technical supports are required to construct a visual reporting system, with data and information coming from government daily updates and social media.
T49 6864-7139 Sentence denotes It is important for other countries to timely share the indicators information with the WHO, and a global visual surveillance system is increasingly required, together with current modules in daily situation report, travel advice, technical guidance, and global research [9].
T50 7141-7151 Sentence denotes Conclusion
T51 7152-7271 Sentence denotes Due to the sudden outbreak of the COVID-19, China’s health system is being verified for its effectiveness in responses.
T52 7272-7439 Sentence denotes Although the outbreak has brought huge socioeconomic loss, the public health system for emergency events in China will be undoubtedly much improved in the near future.
T53 7440-7562 Sentence denotes Moreover, public reporting has become an accumulative advantage for China to collaborate with the WHO and other countries.
T54 7563-7717 Sentence denotes More research is needed to explore the influential factors behind the indicators for more efficient and more effective policy decisions and interventions.
T55 7719-7732 Sentence denotes Abbreviations
T56 7733-7788 Sentence denotes 2019-nCoV, or COVID-19, or SARS-CoV-2 Novel coronavirus
T57 7789-7834 Sentence denotes CDC Center for Disease Control and Prevention
T58 7835-7876 Sentence denotes ICT Information communications technology
T59 7877-7906 Sentence denotes WHO World Health Organization
T60 7908-7924 Sentence denotes Acknowledgements
T61 7925-8044 Sentence denotes The authors would like to thank Prof. Dan Cui from Global Health Institute, Wuhan University for her valuable comments.
T62 8045-8123 Sentence denotes Special thanks to the invited reviewers as well for their insightful comments.
T63 8125-8147 Sentence denotes Authors’ contributions
T64 8148-8237 Sentence denotes LI H wrote the draft of the manuscript with the advice and after discussion with Chen XG.
T65 8238-8312 Sentence denotes Huang H supported in data and literature collection, and language editing.
T66 8313-8364 Sentence denotes The authors read and approved the final manuscript.
T67 8366-8373 Sentence denotes Funding
T68 8374-8451 Sentence denotes This work is supported by the journal development fund from Wuhan University.
T69 8453-8487 Sentence denotes Availability of data and materials
T70 8488-8503 Sentence denotes Not applicable.
T71 8505-8547 Sentence denotes Ethics approval and consent to participate
T72 8548-8563 Sentence denotes Not applicable.
T73 8565-8588 Sentence denotes Consent for publication
T74 8589-8647 Sentence denotes The authors all agreed the publication of this manuscript.
T75 8649-8668 Sentence denotes Competing interests
T76 8669-8727 Sentence denotes The authors declare that they have no competing interests.