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PMC:7060038 / 15789-18805 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
131 2507-2514 Species denotes patient Tax:9606
132 2719-2726 Species denotes patient Tax:9606
133 755-760 Disease denotes fever MESH:D005334
134 764-769 Disease denotes cough MESH:D003371
135 866-871 Disease denotes fever MESH:D005334
136 877-882 Disease denotes cough MESH:D003371
137 914-919 Disease denotes fever MESH:D005334
138 925-930 Disease denotes cough MESH:D003371
139 963-968 Disease denotes fever MESH:D005334
140 974-979 Disease denotes cough MESH:D003371
141 1015-1020 Disease denotes fever MESH:D005334
142 1050-1055 Disease denotes fever MESH:D005334
143 2018-2023 Disease denotes fever MESH:D005334
145 208-213 Disease denotes error MESH:D012030

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 2267-2271 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T52 437-440 http://purl.obolibrary.org/obo/CLO_0001313 denotes 3–6
T53 503-505 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T54 503-505 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T55 985-987 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T56 1109-1115 http://purl.obolibrary.org/obo/CLO_0001658 denotes Active
T57 1458-1460 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T58 1458-1460 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T59 1822-1823 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T60 2153-2154 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T61 2254-2260 http://purl.obolibrary.org/obo/OBI_0000968 denotes device
T62 2815-2817 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 503-505 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145
T3 1458-1460 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T16 755-760 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T17 764-769 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T18 866-871 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 877-882 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T20 914-919 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T21 925-930 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T22 963-968 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T23 974-979 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T24 1015-1020 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T25 1050-1055 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T26 2018-2023 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32091395-32109013-27032132 1103-1107 32109013 denotes 2020
32091395-19215720-27032133 2103-2107 19215720 denotes 2009
32091395-21245928-27032134 2124-2128 21245928 denotes 2011
32091395-26296847-27032135 2142-2146 26296847 denotes 2015

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T82 0-8 Sentence denotes Table 1.
T83 10-123 Sentence denotes Parameter values estimated in currently available studies, along with accompanying uncertainties and assumptions.
T84 124-257 Sentence denotes Ranges in the final column reflect confidence interval, credible interval, standard error or range reported by each study referenced.
T85 258-359 Sentence denotes Parameter Best estimate (Used in Figure 2) Plausible range (Used in Figure 3) References and notes
T86 360-405 Sentence denotes Mean incubation period 5.5 days Sensitivity:
T87 406-620 Sentence denotes 4.5 or 6.5 days 4.5–6.5 days 3–6 days, n = 4 (Chan et al., 2020)* 5.2 (4.1–7.0) days, n < 425 (Li et al., 2020)† 5.2 (4.4–6.0) days, n = 101 (Lauer et al., 2020)† 6.5 (5.6–7.9) days, n = 88 (Backer et al., 2020)†
T88 621-721 Sentence denotes Incubation period distribution Gamma distribution with mean as above, and standard deviation = 2.25
T89 722-791 Sentence denotes Percent of cases subclinical (No fever or cough) Best case scenario:
T90 792-816 Sentence denotes 5% Middle case scenario:
T91 817-841 Sentence denotes 25% Worst case scenario:
T92 842-861 Sentence denotes 50% Clinical data:
T93 862-1349 Sentence denotes 83% fever, 67% cough, n = 6 (Chan et al., 2020) 83% fever, 82% cough, n = 99 (Chen et al., 2020) 98% fever, 76% cough, n = 41 (Huang et al., 2020) 43.8% fever at hospital admission, 88.7% fever during hospitalization, n = 1099 (Guan et al., 2020) Active monitoring after repatriation flights or on cruise ships: % asymptomatic at diagnosis 31.2% (111/355) (Japan Ministry of Health, Labor and Welfare, 2020) 65.2% (5 of 8) (Nishiura et al., 2020) 70.0% (7 of 10) (Dorigatti et al., 2020)
T94 1350-1393 Sentence denotes R0 No effect in individual-level analysis.
T95 1395-1753 Sentence denotes 1.5–4.0 2.2 (1.4–3.8) (Riou and Althaus, 2020) 2.2 (1.4–3.9) (Li et al., 2020) 2.6 (1.5–3.5) (Imai et al., 2020) 2.7 (2.5–2.9) (Wu et al., 2020) 4.5 (4.4-4.6) (Liu et al., 2020) 3.8 (3.6-4.0) (Read et al., 2020) 4.08 (3.37–4.77) (Cao et al., 2020) 4.7 (2.8–7.6) (Sanche et al., 2020) 6.3 (3.3-11.3) (Sanche et al., 2020) 6.47 (5.71–7.23) (Tang et al., 2020)
T96 1754-1972 Sentence denotes Percent of travellers aware of exposure risk 20% 5–40% We assume a low percentage, as no specific risk factors have been identified, and known times or sources of exposure are rarely reported in existing line lists.
T97 1973-2148 Sentence denotes Sensitivity of infrared thermal scanners for fever 70% 60–90% Most studies estimated sensitivity between 60–88% (Bitar et al., 2009; Priest et al., 2011; Tay et al., 2015).
T98 2149-2213 Sentence denotes But a handful of studies estimated very low sensitivity (4–30%).
T99 2214-2310 Sentence denotes In general, sensitivity depended on the device used, body area targeted and ambient temperature.
T100 2311-2479 Sentence denotes Probability that travellers self-report exposure risk 25% 5–25% 25% is an upper-bound estimate based on outcomes of past screening initiatives. (Gostic et al., 2015)
T101 2480-2612 Sentence denotes Time from symptom onset to patient isolation (After which we assume travel is not possible) No effect in individual-level analysis.
T102 2614-2895 Sentence denotes 3–7 days Median 7 days from onset to hospitalization (n = 6) (Chan et al., 2020) Mean 2.9 days onset to patient isolation (n = 164) (Liu et al., 2020) Median 7 days from onset to hospitalization (n = 41) (Huang et al., 2020) As awareness increases, times to isolation may decline.
T103 2896-2918 Sentence denotes * From family cluster.
T104 2919-3016 Sentence denotes † Parametric distributions fit to cases with known dates of exposure or travel to and from Wuhan.

MyTest

Id Subject Object Predicate Lexical cue
32091395-32109013-27032132 1103-1107 32109013 denotes 2020
32091395-19215720-27032133 2103-2107 19215720 denotes 2009
32091395-21245928-27032134 2124-2128 21245928 denotes 2011
32091395-26296847-27032135 2142-2146 26296847 denotes 2015