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PMC:7055038 / 9338-11527 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
171 1089-1095 Species denotes People Tax:9606
172 76-84 Disease denotes COVID-19 MESH:C000657245
173 783-791 Disease denotes COVID-19 MESH:C000657245
178 1273-1281 Species denotes patients Tax:9606
179 1508-1518 Species denotes SARS-CoV-2 Tax:2697049
180 1968-1978 Species denotes SARS-CoV-2 Tax:2697049
181 1869-1877 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T41 141-148 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T42 285-292 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T43 544-551 Body_part denotes genomes http://purl.org/sig/ont/fma/fma84116
T44 897-903 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T45 2005-2011 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T57 76-84 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T58 783-791 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T59 1508-1516 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 1508-1512 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 1740-1750 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T62 1869-1877 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T63 1968-1976 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T64 1968-1972 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T74 527-532 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T75 564-566 http://purl.obolibrary.org/obo/CLO_0007074 denotes kb
T76 564-566 http://purl.obolibrary.org/obo/CLO_0051988 denotes kb
T77 580-581 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T78 1154-1159 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T79 1350-1353 http://purl.obolibrary.org/obo/CLO_0002807 denotes Don
T80 1488-1494 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T81 1948-1954 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T82 2131-2132 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

2_test

Id Subject Object Predicate Lexical cue
32127124-32046819-29320647 869-871 32046819 denotes 16
32127124-28382917-29320648 2047-2049 28382917 denotes 18
32127124-31565258-29320649 2050-2052 31565258 denotes 19

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T81 0-25 Sentence denotes Discussion and conclusion
T82 26-163 Sentence denotes According to the cases’ history, the two imported COVID-19 cases described here are not directly linked, yet their genomes are identical.
T83 164-465 Sentence denotes Further, according to information provided by the cases, they have no direct link to the Huanan Seafood Market but their genomes are identical to four sequences from Wuhan collected on 30 December 2019 and sequenced by three different laboratories, indicating potential wider distribution in the city.
T84 466-698 Sentence denotes Although within-outbreak sequence divergence is low for this virus, identical genomes of up to 30 kb are rare and a strong sign of recent transmission linkage, albeit with unknown number of generations within the transmission chain.
T85 699-858 Sentence denotes The missing link to the market, the time of travel and onset of symptoms in the two COVID-19 cases together with the incubation period of mean 6.4 days (range:
T86 859-1088 Sentence denotes 5.6–7.7) [16] and the time of closest genome neighbours obtained from sequences in Wuhan, suggest that transmission within Wuhan beyond the Huanan Seafood Market is likely to have occurred in the first week of January or earlier.
T87 1089-1228 Sentence denotes People travelling out of the city since then may have spread the virus further before travel restrictions were enforced on 23 January [17].
T88 1229-1454 Sentence denotes Thailand implemented measures for screening patients travelling from Wuhan since 3 January 2020 at Suvarnabhumi Airport, Don Mueang, Phuket and Chiang Mai airports, and stepped up surveillance at public and private hospitals.
T89 1455-1609 Sentence denotes The two cases described here who tested positive for SARS-CoV-2 were the first confirmed exported cases from China, suggesting early international spread.
T90 1610-1979 Sentence denotes Therefore, while one cannot exclude the possibility that asymptomatic cases in their incubation period would be missed and become infectious later, screening of incoming travellers from an affected area proved successful at least in these two instances, when COVID-19 cases were detected, isolated, observed and only discharged once they tested negative for SARS-CoV-2.
T91 1980-2189 Sentence denotes Rapid response including genome sequencing and sharing via GISAID [18,19] (https://www.gisaid.org/) enabled fast dissemination of results and provided a glimpse of early transmission patterns in this outbreak.

MyTest

Id Subject Object Predicate Lexical cue
32127124-32046819-29320647 869-871 32046819 denotes 16
32127124-28382917-29320648 2047-2049 28382917 denotes 18
32127124-31565258-29320649 2050-2052 31565258 denotes 19