PMC:7055038 / 6220-6983
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 117 | 65-76 | Species | denotes | coronavirus | Tax:11118 |
| 118 | 160-168 | Species | denotes | SARS CoV | Tax:694009 |
| 119 | 200-210 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 125 | 233-236 | Species | denotes | CoV | Tax:11118 |
| 126 | 238-249 | Species | denotes | coronavirus | Tax:11118 |
| 127 | 257-301 | Species | denotes | Middle East respiratory syndrome coronavirus | Tax:1335626 |
| 128 | 251-255 | Disease | denotes | MERS | MESH:D018352 |
| 129 | 309-342 | Disease | denotes | severe acute respiratory syndrome | MESH:D045169 |
| 133 | 359-369 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 134 | 390-394 | Disease | denotes | MERS | MESH:D018352 |
| 135 | 410-414 | Disease | denotes | cold | MESH:D000067390 |
| 141 | 431-435 | Gene | denotes | ACE2 | Gene:59272 |
| 142 | 436-441 | Species | denotes | human | Tax:9606 |
| 143 | 463-466 | Species | denotes | CoV | Tax:11118 |
| 144 | 528-536 | Species | denotes | SARS-CoV | Tax:694009 |
| 145 | 540-550 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T28 | 139-151 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T29 | 473-485 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
| T30 | 597-603 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T31 | 695-698 | Body_part | denotes | MCL | http://purl.org/sig/ont/fma/fma305650 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T33 | 160-164 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T34 | 200-208 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T35 | 200-204 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T36 | 303-307 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T37 | 309-342 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T38 | 359-367 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T39 | 359-363 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T40 | 376-380 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T41 | 403-414 | Disease | denotes | common cold | http://purl.obolibrary.org/obo/MONDO_0005709 |
| T42 | 528-536 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T43 | 528-532 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T44 | 540-548 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T45 | 540-544 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T57 | 87-88 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T58 | 230-231 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T59 | 350-351 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T60 | 422-423 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T61 | 436-441 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T62 | 744-749 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T3 | 139-151 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T4 | 473-485 | Chemical | denotes | glycoprotein | http://purl.obolibrary.org/obo/CHEBI_17089 |
| T5 | 756-760 | Chemical | denotes | MEGA | http://purl.obolibrary.org/obo/CHEBI_6617 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32127124-30102747-29320641 | 179-181 | 30102747 | denotes | 12 |
| 32127124-24996895-29320642 | 225-227 | 24996895 | denotes | 20 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T56 | 0-232 | Sentence | denotes | Figure 1 Phylogenetic trees of Thai sequences in context of all coronavirus families (A) and structural mapping of mutations in the spike glycoprotein between SARS CoV (PDB:6CG [12]) and the current SARS-CoV-2 using YASARA [20] (B) |
| T57 | 233-256 | Sentence | denotes | CoV: coronavirus; MERS: |
| T58 | 257-343 | Sentence | denotes | Middle East respiratory syndrome coronavirus; SARS: severe acute respiratory syndrome. |
| T59 | 344-415 | Sentence | denotes | Panel A: blue: SARS-CoV-2; red: SARS; purple: MERS; green: common cold. |
| T60 | 416-462 | Sentence | denotes | Panel B: cyan: ACE2 human host receptor; grey: |
| T61 | 463-551 | Sentence | denotes | CoV spike glycoprotein trimer (PDB:6ACG); red: mutations between SARS-CoV vs SARS-CoV-2. |
| T62 | 552-763 | Sentence | denotes | The phylogenetic tree was created from whole genome alignment with MAFFT using the neighbour-joining method with maximum composite likelihood (MCL) model, uniform site rates and 500 bootstrap tests using MEGA X. |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32127124-30102747-29320641 | 179-181 | 30102747 | denotes | 12 |
| 32127124-24996895-29320642 | 225-227 | 24996895 | denotes | 20 |