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PMC:7055038 / 4031-5777 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
73 9-14 Species denotes woman Tax:9606
74 296-303 Species denotes patient Tax:9606
75 426-433 Species denotes patient Tax:9606
76 915-922 Species denotes patient Tax:9606
77 227-232 Disease denotes fever MESH:D005334
78 315-326 Disease denotes sore throat MESH:D010608
79 337-342 Disease denotes fever MESH:D005334
80 388-393 Disease denotes cough MESH:D003371
81 494-504 Disease denotes tachypnoea
82 538-547 Disease denotes pneumonia MESH:D011014
83 767-779 Disease denotes cardiomegaly MESH:D006332
89 970-977 Species denotes patient Tax:9606
90 1103-1107 Species denotes pigs Tax:9823
91 1109-1115 Species denotes camels Tax:9837
92 1251-1258 Species denotes persons Tax:9606
93 1264-1284 Disease denotes respiratory symptoms MESH:D012818
100 1328-1335 Species denotes patient Tax:9606
101 1357-1360 Species denotes CoV Tax:11118
102 1432-1442 Species denotes SARS-CoV-2 Tax:2697049
103 1560-1570 Species denotes adenovirus Tax:10508
104 1576-1583 Species denotes patient Tax:9606
105 1659-1662 Species denotes CoV Tax:11118

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T18 320-326 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T19 634-638 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T20 661-665 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T21 748-752 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T22 792-797 Body_part denotes aorta http://purl.org/sig/ont/fma/fma3734
T23 899-903 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T24 1384-1390 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T13 320-326 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T14 634-638 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 661-672 Body_part denotes lung fields http://purl.obolibrary.org/obo/UBERON_0022361
T16 661-665 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T17 748-752 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T18 792-797 Body_part denotes aorta http://purl.obolibrary.org/obo/UBERON_0000947
T19 899-909 Body_part denotes lung field http://purl.obolibrary.org/obo/UBERON_0022361
T20 899-903 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T25 315-326 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T26 538-547 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 1432-1440 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T28 1432-1436 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 7-8 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T32 150-151 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 225-226 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 268-269 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T35 313-314 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T36 386-387 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 634-638 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T38 634-638 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T39 661-665 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T40 661-665 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T41 666-676 http://purl.obolibrary.org/obo/UBERON_0007688 denotes fields and
T42 748-752 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T43 748-752 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T44 792-797 http://www.ebi.ac.uk/efo/EFO_0000265 denotes aorta
T45 899-903 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T46 899-903 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T47 904-909 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T48 1109-1115 http://purl.obolibrary.org/obo/NCBITaxon_9837 denotes camels
T49 1286-1287 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T50 1315-1319 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T51 1503-1504 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T52 1530-1536 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T53 1634-1641 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 157-162 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T12 227-232 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T13 315-326 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T14 337-342 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T15 388-393 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T16 538-547 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 767-779 Phenotype denotes cardiomegaly http://purl.obolibrary.org/obo/HP_0001640

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T37 0-6 Sentence denotes Case 2
T38 7-86 Sentence denotes A woman in her mid-70s from Wuhan landed at Suvarnabhumi airport on 13 January.
T39 87-190 Sentence denotes She travelled to Thailand with three family members as part of a tour group of 20 (including the case).
T40 191-291 Sentence denotes An airport thermoscanner detected a fever of 38.0 °C that was confirmed with a tympanic thermometer.
T41 292-421 Sentence denotes The patient reported a sore throat, that her fever onset date was 13 January and that she had a cough for an undetermined period.
T42 422-459 Sentence denotes The patient was hospitalised at BIDI.
T43 460-548 Sentence denotes Upon admission, she reported mild tachypnoea, and her CXR was compatible with pneumonia.
T44 549-798 Sentence denotes Similar to case 1, the first CXR taken on 13 January, showed thickening interstitial lung marking at both lower lung fields and both perihilar regions because of interstitial infiltration or crowded lung marking, mild cardiomegaly and dilated aorta.
T45 799-910 Sentence denotes Follow-up CXR on 17 January additionally showed recent hazy with reticular opacities at left middle lung field.
T46 911-962 Sentence denotes The patient was not in severe condition but stable.
T47 963-1068 Sentence denotes In the patient interview, she reported that she did not visit the Huanan Seafood Market or other markets.
T48 1069-1206 Sentence denotes She also reported no contact with pigs, camels, other mammals (or areas with dead birds), or any consumption of raw or undercooked foods.
T49 1207-1285 Sentence denotes She stated that she was not in contact with persons with respiratory symptoms.
T50 1286-1372 Sentence denotes A conventional nested RT-PCR test of this patient was positive for the CoV family [9].
T51 1373-1502 Sentence denotes Subsequent genome sequencing was again compatible with the SARS-CoV-2 and shared via the GISAID EpiCoV database (EPI_ISL_403963).
T52 1503-1571 Sentence denotes A nasopharyngeal swab also tested positive by RT-PCR for adenovirus.
T53 1572-1746 Sentence denotes The patient was no longer febrile as of 17 January, and after testing negative for the CoV family by conventional nested RT-PCR, she was discharged and she returned to China.