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PMC:7055038 / 1337-4029 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
35 9-14 Species denotes woman Tax:9606
36 55-60 Disease denotes fever MESH:D005334
37 74-85 Disease denotes sore throat MESH:D010608
38 90-98 Disease denotes headache MESH:D006261
39 557-575 Disease denotes Infectious Disease MESH:D003141
40 690-701 Disease denotes sore throat MESH:D010608
41 709-716 Disease denotes dyspnea MESH:D004417
42 720-729 Disease denotes diarrhoea MESH:D003967
43 927-942 Disease denotes viral infection MESH:D001102
44 1109-1118 Disease denotes pneumonia MESH:D011014
45 1258-1270 Disease denotes cardiomegaly MESH:D006332
50 1348-1355 Species denotes patient Tax:9606
51 1590-1597 Species denotes patient Tax:9606
52 1864-1871 Species denotes persons Tax:9606
53 1877-1897 Disease denotes respiratory symptoms MESH:D012818
58 2055-2058 Species denotes CoV Tax:11118
59 2567-2574 Species denotes patient Tax:9606
60 2612-2622 Species denotes SARS-CoV-2 Tax:2697049
61 2215-2234 Disease denotes Infectious Diseases MESH:D003141

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T4 79-85 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T5 681-685 Body_part denotes nose http://purl.org/sig/ont/fma/fma46472
T6 695-701 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T7 795-800 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T8 877-881 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T9 903-908 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T10 969-979 Body_part denotes neutrophil http://purl.org/sig/ont/fma/fma62860
T11 1003-1013 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T12 1049-1054 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T13 1140-1144 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 1167-1172 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T15 1201-1205 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 1954-1977 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T17 1993-1999 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 79-85 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T2 681-685 Body_part denotes nose http://purl.obolibrary.org/obo/UBERON_0000004
T3 695-701 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T4 795-800 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T5 877-881 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 903-908 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T7 1049-1054 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 1140-1144 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 1201-1205 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 1954-1977 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T11 1960-1977 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T12 1993-1999 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T13 74-85 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T14 557-567 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T15 675-685 Disease denotes runny nose http://purl.obolibrary.org/obo/MONDO_0003014
T16 690-701 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T17 720-729 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T18 927-942 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T19 933-942 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 1109-1118 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T21 2215-2225 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T22 2424-2433 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T23 2612-2620 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T24 2612-2616 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 7-8 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 53-54 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 130-131 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 228-229 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 312-313 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 447-448 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 673-674 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 681-685 http://www.ebi.ac.uk/efo/EFO_0000828 denotes nose
T10 795-800 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T11 795-800 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T12 877-881 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T13 877-881 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T14 903-908 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T15 903-908 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T16 925-926 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 981-983 http://purl.obolibrary.org/obo/CLO_0001382 denotes 48
T18 992-994 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T19 1049-1054 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T20 1140-1144 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T21 1140-1144 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T22 1167-1172 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T23 1201-1205 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T24 1201-1205 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T25 1644-1651 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T26 1684-1691 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T27 2017-2023 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T28 2075-2076 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 2591-2598 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T30 2676-2678 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 319-324 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 244-250 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T2 927-942 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T3 1978-1988 http://purl.obolibrary.org/obo/GO_0046903 denotes secretions

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 55-60 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T3 66-72 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T4 74-85 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T5 90-98 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T6 675-685 Phenotype denotes runny nose http://purl.obolibrary.org/obo/HP_0031417
T7 690-701 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T8 709-716 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T9 720-729 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T10 1109-1118 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 1258-1270 Phenotype denotes cardiomegaly http://purl.obolibrary.org/obo/HP_0001640

2_test

Id Subject Object Predicate Lexical cue
32127124-27995553-29320638 1041-1042 27995553 denotes 8

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T11 0-6 Sentence denotes Case 1
T12 7-117 Sentence denotes A woman in her early 60s from Wuhan developed a fever with chills, sore throat and headache on 5 January 2020.
T13 118-199 Sentence denotes She went to a local health facility in China and received undisclosed medication.
T14 200-352 Sentence denotes On 8 January 2020, she took a direct ca 4 h flight to Thailand from Wuhan, with five family members, as part of a tour group of 16 (including the case).
T15 353-470 Sentence denotes Her measured temperature at the arrival gate was 38.6 °C by thermoscanner, and confirmed with a tympanic thermometer.
T16 471-659 Sentence denotes After being interviewed by quarantine officers, she was transferred to Bamrasnaradura Infectious Disease Institute (BIDI) Hospital, Nonthaburi, for isolation and laboratory investigations.
T17 660-730 Sentence denotes She reported a runny nose and sore throat but no dyspnea or diarrhoea.
T18 731-810 Sentence denotes Upon admission, her vital signs were normal except for elevated blood pressure.
T19 811-889 Sentence denotes Her physical examination was unremarkable including inconspicuous lung sounds.
T20 890-991 Sentence denotes Her complete blood count suggested a viral infection from relatively decreased neutrophil (48%; norm:
T21 992-1025 Sentence denotes 35–75%) to lymphocyte (40%; norm:
T22 1026-1044 Sentence denotes 20–59%) ratio [8].
T23 1045-1231 Sentence denotes The chest X-ray (CXR) results on 8 January were compatible with pneumonia with mild thickening lung marking at both lower lungs possibly because of crowded lung rather than infiltration.
T24 1232-1271 Sentence denotes It also showed borderline cardiomegaly.
T25 1272-1325 Sentence denotes Repeat CXR after 7 days showed no remarkable changes.
T26 1326-1515 Sentence denotes In the interview, the patient explicitly stated that she had not visited the Huanan Seafood Market but she was living near another local market, which she visited daily until illness onset.
T27 1516-1585 Sentence denotes This market was at ca 7.5 km distance from the Huanan Seafood Market.
T28 1586-1692 Sentence denotes The patient also reported that she had not purchased live animals and or visited stalls with live animals.
T29 1693-1758 Sentence denotes She did not visit Jinyintai Hospital or other hospitals in Wuhan.
T30 1759-1829 Sentence denotes However, she visited local dispensaries in Wuhan to obtain medication.
T31 1830-1898 Sentence denotes She also reported no contact with persons with respiratory symptoms.
T32 1899-2000 Sentence denotes Clinical specimens collected on admission included the upper respiratory tract secretions and sputum.
T33 2001-2108 Sentence denotes These specimens tested positive on 12 January for the CoV family by using a conventional nested RT-PCR [9].
T34 2109-2481 Sentence denotes Genomic sequencing analysis included Sanger and next generation sequencing were performed by the Emerging Infectious Diseases Health Science Center, the Thai Red Cross Society and the Thai National Institute of Health, Department of Medical Sciences and the sequence shared via the Global Initiative on Sharing All Influenza Data (GISAID) EpiCoV database (EPI_ISL_403962).
T35 2482-2562 Sentence denotes The sequencing protocol and details are provided in the Supplementary Materials.
T36 2563-2692 Sentence denotes The patient recovered after testing negative for SARS-CoV-2, and returned to China without signs and symptoms on 18 January 2020.

MyTest

Id Subject Object Predicate Lexical cue
32127124-27995553-29320638 1041-1042 27995553 denotes 8