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PMC:7055035 / 62-4809 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
11 624-671 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
12 673-683 Species denotes SARS-CoV-2 Tax:2697049
13 785-802 Species denotes novel coronavirus Tax:2697049
14 938-943 Species denotes Human Tax:9606
15 1110-1120 Species denotes SARS-CoV-2 Tax:2697049
16 838-852 Disease denotes Viral Diseases MESH:D001102
17 880-890 Disease denotes EVD-LabNet MESH:D019142
18 1472-1496 Disease denotes coronavirus disease 2019 MESH:C000657245
19 1498-1506 Disease denotes COVID-19 MESH:C000657245
27 2022-2028 Species denotes people Tax:9606
28 2228-2238 Species denotes SARS-CoV-2 Tax:2697049
29 2434-2440 Species denotes people Tax:9606
30 2001-2011 Disease denotes infections MESH:D007239
31 2441-2445 Disease denotes died MESH:D003643
32 2463-2471 Disease denotes COVID-19 MESH:C000657245
33 2662-2668 Disease denotes deaths MESH:D003643
42 3168-3178 Species denotes SARS-CoV-2 Tax:2697049
43 3325-3333 Species denotes patients Tax:9606
44 3357-3367 Species denotes SARS-CoV-2 Tax:2697049
45 3573-3580 Species denotes patient Tax:9606
46 3703-3711 Species denotes patients Tax:9606
47 3806-3816 Species denotes SARS-CoV-2 Tax:2697049
48 4136-4146 Species denotes SARS-CoV-2 Tax:2697049
49 3725-3750 Disease denotes respiratory viral disease
55 4201-4211 Species denotes SARS-CoV-2 Tax:2697049
56 4281-4291 Species denotes SARS-CoV-2 Tax:2697049
57 4580-4590 Species denotes SARS-CoV-2 Tax:2697049
58 4618-4628 Species denotes SARS-CoV-2 Tax:2697049
59 4668-4685 Species denotes human coronavirus Tax:694448

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T73 624-636 SP_7 denotes severe acute
T72 637-648 SP_7;UBERON:0001004 denotes respiratory
T71 649-671 SP_7 denotes syndrome coronavirus 2
T70 673-683 SP_7 denotes SARS-CoV-2
T69 791-802 NCBITaxon:11118 denotes coronavirus
T68 938-943 SP_6;NCBITaxon:9606 denotes Human
T67 1110-1120 SP_7 denotes SARS-CoV-2
T66 1347-1352 NCBITaxon:10239 denotes virus
T65 1472-1483 NCBITaxon:11118 denotes coronavirus
T64 1498-1506 SP_7 denotes COVID-19
T63 1818-1825 GO:0065007 denotes control
T62 2022-2028 NCBITaxon:9606 denotes people
T61 2228-2238 SP_7 denotes SARS-CoV-2
T60 2308-2319 GO:0051170 denotes importation
T59 2434-2440 NCBITaxon:9606 denotes people
T58 2441-2445 GO:0016265 denotes died
T57 2463-2471 SP_7 denotes COVID-19
T56 2662-2668 GO:0016265 denotes deaths
T55 2765-2772 GO:0065007 denotes control
T54 3168-3178 SP_7 denotes SARS-CoV-2
T53 3357-3367 SP_7 denotes SARS-CoV-2
T52 3439-3450 NCBITaxon:11886;UBERON:0001004 denotes respiratory
T51 3451-3458 NCBITaxon:10239 denotes viruses
T50 3536-3547 UBERON:0001004 denotes respiratory
T49 3725-3736 UBERON:0001004 denotes respiratory
T48 3737-3742 NCBITaxon:10239 denotes viral
T47 3771-3782 UBERON:0001004 denotes respiratory
T46 3806-3816 SP_7 denotes SARS-CoV-2
T45 3877-3888 UBERON:0001004 denotes respiratory
T44 3889-3896 NCBITaxon:10239 denotes viruses
T43 3993-4004 UBERON:0001004 denotes respiratory
T42 4005-4012 NCBITaxon:10239 denotes viruses
T41 4136-4146 SP_7 denotes SARS-CoV-2
T40 4201-4211 SP_7 denotes SARS-CoV-2
T39 4281-4291 SP_7 denotes SARS-CoV-2
T38 4440-4451 UBERON:0001004 denotes respiratory
T37 4452-4459 NCBITaxon:10239 denotes viruses
T36 4580-4590 SP_7 denotes SARS-CoV-2
T35 4618-4628 SP_7 denotes SARS-CoV-2
T34 4668-4673 SP_6;NCBITaxon:9606 denotes human
T33 4674-4685 NCBITaxon:11118 denotes coronavirus

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 624-671 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T3 624-657 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T4 673-681 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 944-953 Disease denotes Influenza http://purl.obolibrary.org/obo/MONDO_0005812
T6 1110-1118 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 1472-1496 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T8 1498-1506 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T9 2001-2011 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T10 2036-2046 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T11 2228-2236 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T12 2463-2471 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 3168-3176 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T14 3357-3365 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 3737-3750 Disease denotes viral disease http://purl.obolibrary.org/obo/MONDO_0005108
T16 3806-3814 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T17 4136-4144 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 4201-4209 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 4281-4289 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T20 4580-4588 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 4618-4626 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 32-33 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T2 56-57 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 194-195 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 213-214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T5 281-282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 476-488 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T7 938-943 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes Human
T8 1124-1125 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1164-1170 http://purl.obolibrary.org/obo/CLO_0001658 denotes active
T10 1251-1252 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 1347-1352 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T12 1582-1585 http://purl.obolibrary.org/obo/CLO_0001320 denotes 381
T13 1582-1585 http://purl.obolibrary.org/obo/CLO_0001321 denotes 381
T14 1673-1680 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T15 1923-1926 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 2431-2433 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T17 2698-2700 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T18 2791-2792 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 3451-3458 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T20 3672-3678 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T21 3852-3853 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 3889-3896 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T23 4005-4012 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T24 4105-4106 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 4452-4459 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T26 4668-4673 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 407-418 http://purl.obolibrary.org/obo/GO_0065007 denotes Regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-14 Sentence denotes To the editor:
T4 15-165 Sentence denotes The emergence of a novel pathogen raises a wide range of urgent questions that need to be addressed to guide clinical and public health responses [1].
T5 166-359 Sentence denotes One of the cornerstones and a prerequisite for a proper public health and clinical response is the availability of a reliable diagnostic and reference laboratory service with adequate capacity.
T6 360-691 Sentence denotes This is recognised in the International Health Regulations (IHR 2005) and explicitly recognised by the World Health Organization (WHO) and the European Centre for Disease Prevention and Control (ECDC) in their risk assessments and guidelines upon the emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) [2–5].
T7 692-1068 Sentence denotes Colson et al. question the proportionality of the laboratory readiness and response for this novel coronavirus in expert laboratories of Emerging Viral Diseases-Expert Laboratory Network (EVD-LabNet) and European Reference Laboratory Network for Human Influenza (ERLI-Net) in 30 European Union and European Economic Area (EU/EEA) countries, as outlined in our publication [6].
T8 1069-1401 Sentence denotes The initial response to the emergence of SARS-CoV-2 is a strategy of containment consisting of active case finding in combination with case isolation and quarantine of contacts [3], a strategy for which adequate worldwide laboratory services are indispensable as seeding of the virus through travellers from China could be expected.
T9 1402-1627 Sentence denotes Indeed, during the response period for our survey, the first cases of coronavirus disease 2019 (COVID-19) were already notified in France on 24 January and as at 26 February 2020, 381 cases have been notified in Europe [6,7].
T10 1628-1853 Sentence denotes While the current response strategy is still focused on containment, it is becoming increasingly clear that the epidemic may turn global, in which case mitigation will be the next option to control the impact of the pandemic.
T11 1854-2077 Sentence denotes Substantial autochthonous circulation in Italy, Iran and South Korea has been reported by now, while there is increasing evidence that subclinical infections occur and people may be infectious before symptoms appear [8–10].
T12 2078-2183 Sentence denotes These developments indicate that the window of opportunity to contain and eradicate is rapidly narrowing.
T13 2184-2601 Sentence denotes Colson et al. remark that “the emergence of SARS-CoV-2 in December 2019 reproduced this pattern of disproportionate fear of importation and spread in mainland France while the cases reported worldwide remain almost only localised in China as only 34 people died of this disease (COVID-19) outside China” thus may rapidly become invalid with the increasing instances of ongoing transmission in locations outside China.
T14 2602-2702 Sentence denotes Already in the past 24 h (25 to 26 February 2020), nine new deaths outside China were reported [11].
T15 2703-2876 Sentence denotes Therefore, it is needless to state that for each phase in the control and mitigation of a novel emerging pathogen, adequate laboratory preparedness and response are crucial.
T16 2877-3052 Sentence denotes The readiness survey that we performed served the important purpose of mapping the initial response capacities in Europe and identifying barriers to diagnostic implementation.
T17 3053-3334 Sentence denotes Therefore, we maintain that the urgent implementation and monitoring of diagnostic capacities and capabilities for SARS-CoV-2 in Europe is proportional to the containment and expected mitigation phase of the global public health response and is critical for care of local patients.
T18 3335-3459 Sentence denotes The implementation of SARS-CoV-2 diagnostics does not replace nor exclude diagnostic capacity for other respiratory viruses.
T19 3460-3588 Sentence denotes Moreover, it explicitly does not disregard the importance of other seasonal respiratory pathogens for public and patient health.
T20 3589-3817 Sentence denotes This is clearly illustrated by the authors themselves, who indicate that they have tested thousands of samples of patients suspected of respiratory viral disease not only for common respiratory pathogens but also for SARS-CoV-2.
T21 3818-3944 Sentence denotes The fact that Colson et al. found a wide range of seasonal respiratory viruses indeed underlines the impact of such pathogens.
T22 3945-4147 Sentence denotes Furthermore, it clearly shows that diagnosis of respiratory viruses cannot be done syndrome-based and supports the need for the availability of diagnostics for a panel of pathogens including SARS-CoV-2.
T23 4148-4375 Sentence denotes The proportionality of the measures taken to control SARS-CoV-2 can only be rightly evaluated when the critical questions related to SARS-CoV-2, including the exact mortality rate highlighted by the authors, have been answered.
T24 4376-4499 Sentence denotes These answers are already largely known for the common seasonal respiratory viruses but until then cautiousness, is needed.
T25 4500-4747 Sentence denotes Regardless of the outcomes of the rapidly evolving epidemiological situation of SARS-CoV-2 and even in the event that SARS-CoV-2 becomes the fifth commonly circulating human coronavirus, the need for diagnostic capacity and capability will remain.