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PMC:7054964 / 2933-4028 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
58 0-8 Species denotes Patients Tax:9606
59 51-60 Species denotes 2019-nCoV Tax:2697049
60 128-134 Species denotes People Tax:9606
61 248-254 Species denotes People Tax:9606
62 413-421 Species denotes patients Tax:9606
63 35-43 Disease denotes infected MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T19 271-276 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T20 429-432 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T21 486-490 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T22 561-565 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T23 689-693 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T9 271-276 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 917-921 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T31 61-66 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 271-276 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T33 271-276 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T34 486-490 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T35 561-565 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T36 689-693 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T37 867-872 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T38 917-921 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T39 1074-1075 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 1085-1091 http://purl.obolibrary.org/obo/SO_0000418 denotes signal

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 460-464 Chemical denotes Acid http://purl.obolibrary.org/obo/CHEBI_37527
T4 674-681 Chemical denotes reagent http://purl.obolibrary.org/obo/CHEBI_33893
T5 799-804 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 615-638 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcriptional

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T23 0-169 Sentence denotes Patients, who were confirmed to be infected by the 2019-nCoV virus, were firstly enrolled in or transferred to Guangzhou Eighth People’s Hospital for treatment purposes.
T24 170-266 Sentence denotes This study followed the guideline of the Ethics Committee of Guangzhou Eighth People’s Hospital.
T25 267-422 Sentence denotes All blood, pharyngeal swab, and anal swab samples were collected for diagnostic purposes in the laboratory and our study added no extra burden to patients.
T26 423-604 Sentence denotes Viral RNA was extracted with Nucleic Acid Isolation Kit (Da’an Gene Corporation, Cat: DA0630) on an automatic workstation Smart 32 (Da’an Gene Corporation) following the guidelines.
T27 605-769 Sentence denotes Real-time reverse transcriptional polymerase chain reaction (RT–PCR) reagent (Da’an Gene cooperation, Cat DA0930) was employed for viral detection per the protocol.
T28 770-922 Sentence denotes In brief, two PCR primer and probe sets, which target orf1ab (FAM reporter) and N (VIC reporter) genes separately, were added in the same reaction tube.
T29 923-996 Sentence denotes Positive and negative controls were included for each batch of detection.
T30 997-1095 Sentence denotes Samples were considered to be viral positive when either or both set(s) gave a reliable signal(s).