PMC:7054964 / 161-1093
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 10 | 228-232 | Species | denotes | nCoV | Tax:2697049 |
| 11 | 280-288 | Species | denotes | patients | Tax:9606 |
| 12 | 319-327 | Species | denotes | patients | Tax:9606 |
| 13 | 356-364 | Species | denotes | patients | Tax:9606 |
| 14 | 567-575 | Species | denotes | patients | Tax:9606 |
| 15 | 770-777 | Species | denotes | patient | Tax:9606 |
| 16 | 10-43 | Disease | denotes | coronavirus (2019-nCoV) infection | MESH:C000657245 |
| 17 | 51-60 | Disease | denotes | pneumonia | MESH:D011014 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T3 | 133-138 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T4 | 233-236 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T5 | 265-270 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T6 | 387-390 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T7 | 398-403 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T8 | 482-487 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T9 | 494-497 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T10 | 673-676 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T11 | 738-743 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T12 | 830-845 | Body_part | denotes | digestive tract | http://purl.org/sig/ont/fma/fma317863 |
| T13 | 903-906 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 133-138 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T3 | 265-270 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T4 | 398-403 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T5 | 482-487 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T6 | 738-743 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T7 | 830-845 | Body_part | denotes | digestive tract | http://purl.obolibrary.org/obo/UBERON_0001555 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 22-43 | Disease | denotes | (2019-nCoV) infection | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T2 | 34-43 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T3 | 51-60 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 94-99 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T5 | 133-138 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T6 | 133-138 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T7 | 265-270 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T8 | 265-270 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T9 | 310-312 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T10 | 398-403 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T11 | 398-403 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T12 | 458-459 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T13 | 564-566 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T14 | 592-597 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T15 | 738-743 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T16 | 738-743 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T17 | 756-758 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
| T18 | 801-806 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T19 | 830-845 | http://purl.obolibrary.org/obo/UBERON_0001555 | denotes | digestive tract |
| T20 | 897-902 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 51-60 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 0-204 | Sentence | denotes | The novel coronavirus (2019-nCoV) infection caused pneumonia. we retrospectively analyzed the virus presence in the pharyngeal swab, blood, and the anal swab detected by real-time PCR in the clinical lab. |
| T8 | 205-329 | Sentence | denotes | Unexpectedly, the 2109-nCoV RNA was readily detected in the blood (6 of 57 patients) and the anal swabs (11 of 28 patients). |
| T9 | 330-543 | Sentence | denotes | Importantly, all of the 6 patients with detectable viral RNA in the blood cohort progressed to severe symptom stage, indicating a strong correlation of serum viral RNA with the disease severity (p-value = 0.0001). |
| T10 | 544-636 | Sentence | denotes | Meanwhile, 8 of the 11 patients with annal swab virus-positive was in severe clinical stage. |
| T11 | 637-846 | Sentence | denotes | However, the concentration of viral RNA in the anal swab (Ct value = 24 + 39) was higher than in the blood (Ct value = 34 + 39) from patient 2, suggesting that the virus might replicate in the digestive tract. |
| T12 | 847-932 | Sentence | denotes | Altogether, our results confirmed the presence of virus RNA in extra-pulmonary sites. |