> top > docs > PMC:7054964 > spans > 11614-13445 > annotations

PMC:7054964 / 11614-13445 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
197 484-515 Gene denotes Angiotensin-converting enzyme 2 Gene:59272
198 517-521 Gene denotes ACE2 Gene:59272
199 794-798 Gene denotes ACE2 Gene:59272
200 813-817 Gene denotes ACE2 Gene:59272
201 1443-1447 Gene denotes ACE2 Gene:59272
202 149-156 Species denotes patient Tax:9606
203 310-317 Species denotes patient Tax:9606
204 557-566 Species denotes 2019-nCoV Tax:2697049
205 643-652 Species denotes 2019-nCoV Tax:2697049
206 662-678 Species denotes SARS-Coronavirus Tax:694009
207 788-793 Species denotes human Tax:9606
208 848-854 Species denotes humans Tax:9606
209 1127-1138 Species denotes coronavirus Tax:694448
210 1515-1526 Species denotes coronavirus Tax:694448
211 1557-1562 Species denotes swine Tax:9823
212 1650-1655 Species denotes human Tax:9606
213 1154-1172 Disease denotes pulmonary alveolus MESH:D008171

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T76 40-43 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T77 72-87 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T78 190-193 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T79 287-292 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T80 446-451 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T81 632-639 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T82 739-746 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T83 862-871 Body_part denotes epithelia http://purl.org/sig/ont/fma/fma9639
T84 879-894 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T85 907-924 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T86 956-973 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T87 968-973 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T88 1154-1172 Body_part denotes pulmonary alveolus http://purl.org/sig/ont/fma/fma7318
T89 1205-1213 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T90 1263-1268 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T91 1332-1336 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T92 1397-1412 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T93 1563-1578 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T94 1656-1671 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T95 1738-1753 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T45 72-87 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T46 287-292 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T47 446-451 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T48 862-871 Body_part denotes epithelia http://purl.obolibrary.org/obo/UBERON_0000483
T49 879-894 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T50 885-894 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T51 907-924 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T52 1164-1172 Body_part denotes alveolus http://purl.obolibrary.org/obo/UBERON_0003215
T53 1214-1220 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T54 1263-1268 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T55 1397-1412 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T56 1563-1578 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T57 1656-1671 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T58 1738-1753 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p9683s29 771-782 MPA denotes interaction

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T26 662-666 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T167 10-11 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T168 72-87 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T169 126-131 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T170 160-161 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 205-207 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T172 287-292 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T173 287-292 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T174 446-451 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T175 446-451 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T176 458-460 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T177 788-793 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T178 848-854 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T179 879-894 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T180 956-973 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T181 1096-1101 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T182 1214-1220 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T183 1240-1245 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T184 1263-1268 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T185 1263-1268 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T186 1293-1298 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T187 1326-1336 http://purl.obolibrary.org/obo/UBERON_0013702 denotes whole body
T188 1347-1352 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T189 1397-1412 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T190 1563-1578 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T191 1650-1655 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T192 1656-1671 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T193 1707-1712 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T194 1738-1753 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T195 1771-1776 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 484-495 Chemical denotes Angiotensin http://purl.obolibrary.org/obo/CHEBI_2719
T13 632-639 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T14 739-746 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 1188-1197 http://purl.obolibrary.org/obo/GO_0009056 denotes breakdown

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T90 0-144 Sentence denotes Secondly, a high concentration of viral RNA in anal swabs suggested the digestive tract might be one extra-pulmonary site for virus replication.
T91 145-305 Sentence denotes For patient 1, a high concentration of viral RNA (Ct = 23 + 27, on day 13) was detected in anal swab but not in pharyngeal (the same day) and blood (1 d ahead).
T92 306-483 Sentence denotes For patient 2, higher concentrations of viral RNAs were detected in anal swab (Ct = 24 + 39) and pharyngeal swab (Ct = 23 + 24) than in the blood (Ct = 34 + 39) on the same day.
T93 484-592 Sentence denotes Angiotensin-converting enzyme 2 (ACE2) still is one of the receptors for 2019-nCoV attachment and entry [2].
T94 593-803 Sentence denotes Intensive structural analysis of the S protein of 2019-nCoV with the SARS-Coronavirus suggested that several critical residues in the viral spike protein might confer favourable interaction with human ACE2 [7].
T95 804-1102 Sentence denotes Of note, ACE2 is also abundantly present in humans in the epithelia of the small intestine besides the respiratory tract and is ubiquitously present in endothelial cells [8], which might provide possible routes of transmission, and might account for the high transmission capacity of the new virus.
T96 1103-1337 Sentence denotes We propose that rampant coronavirus replication in pulmonary alveolus results in the breakdown of the alveolar vessel and the subsequent virus leakage into the blood flow, through which the virus is disseminated across the whole body.
T97 1338-1499 Sentence denotes Then the virus succeeds in establishing reinfection in the digestive tract by using the highly expressed ACE2 receptor, which exacerbated the disease vice versa.
T98 1500-1676 Sentence denotes Bat originated coronavirus was found to replicate in the swine digestive tract recently, also suggesting the potential replication possibility in the human digestive tract [9].
T99 1677-1831 Sentence denotes Nevertheless, confirmation of virus transmission through the digestive tract warrants further virus isolation from the anal swab in high safety level lab.