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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 11-20 Species denotes 2019-nCoV Tax:2697049
10 389-393 Species denotes nCoV Tax:2697049
11 441-449 Species denotes patients Tax:9606
12 480-488 Species denotes patients Tax:9606
13 517-525 Species denotes patients Tax:9606
14 728-736 Species denotes patients Tax:9606
15 931-938 Species denotes patient Tax:9606
16 171-204 Disease denotes coronavirus (2019-nCoV) infection MESH:C000657245
17 212-221 Disease denotes pneumonia MESH:D011014
23 1099-1121 Species denotes 2019 novel coronavirus Tax:2697049
24 1123-1132 Species denotes 2019-nCoV Tax:2697049
25 1598-1607 Species denotes 2019-nCoV Tax:2697049
26 1704-1714 Species denotes SARS virus Tax:694009
27 1241-1249 Disease denotes infected MESH:D007239
38 1925-1933 Species denotes patients Tax:9606
39 2028-2037 Species denotes 2019-nCoV Tax:2697049
40 2038-2046 Species denotes patients Tax:9606
41 2137-2145 Species denotes patients Tax:9606
42 2386-2394 Species denotes patients Tax:9606
43 1916-1924 Disease denotes infected MESH:D007239
44 2128-2136 Disease denotes infected MESH:D007239
45 2417-2436 Disease denotes 2019-nCoV pneumonia MESH:C000657245
46 2441-2446 Disease denotes fever MESH:D005334
47 2448-2474 Disease denotes decreased white blood cell MESH:D007022
50 2619-2628 Species denotes 2019-nCoV Tax:2697049
51 2783-2791 Species denotes patients Tax:9606
58 2933-2941 Species denotes Patients Tax:9606
59 2984-2993 Species denotes 2019-nCoV Tax:2697049
60 3061-3067 Species denotes People Tax:9606
61 3181-3187 Species denotes People Tax:9606
62 3346-3354 Species denotes patients Tax:9606
63 2968-2976 Disease denotes infected MESH:D007239
69 5370-5379 Species denotes 2019-nCoV Tax:2697049
70 5559-5566 Species denotes patient Tax:9606
71 5683-5690 Species denotes patient Tax:9606
72 5719-5726 Species denotes patient Tax:9606
73 5824-5832 Species denotes patients Tax:9606
82 4033-4041 Species denotes patients Tax:9606
83 4147-4155 Species denotes patients Tax:9606
84 4287-4295 Species denotes Patients Tax:9606
85 4643-4651 Species denotes patients Tax:9606
86 4451-4457 Chemical denotes Oxygen MESH:D010100
87 4512-4518 Chemical denotes oxygen MESH:D010100
88 4551-4557 Chemical denotes oxygen MESH:D010100
89 4046-4055 Disease denotes pneumonia MESH:D011014
96 7073-7080 Species denotes patient Tax:9606
97 7179-7187 Species denotes patients Tax:9606
98 7330-7337 Species denotes patient Tax:9606
99 7410-7417 Species denotes patient Tax:9606
100 7225-7230 Disease denotes fever MESH:D005334
101 7232-7244 Disease denotes dry-coughing MESH:D003371
111 5978-5985 Species denotes Patient Tax:9606
112 6090-6099 Species denotes 2019-nCoV Tax:2697049
113 6293-6302 Species denotes 2019-nCoV Tax:2697049
114 6878-6887 Species denotes 2019-nCoV Tax:2697049
115 6075-6084 Disease denotes infection MESH:D007239
116 6161-6170 Disease denotes pneumonia MESH:D011014
117 6208-6213 Disease denotes fever MESH:D005334
118 6235-6247 Disease denotes dry coughing MESH:D003371
119 6277-6285 Disease denotes infected MESH:D007239
127 7577-7584 Species denotes Patient Tax:9606
128 7618-7627 Disease denotes infection MESH:D007239
129 7648-7653 Disease denotes fever MESH:D005334
130 7668-7680 Disease denotes dry coughing MESH:D003371
131 7739-7758 Disease denotes 2019-nCoV infection MESH:C000657245
132 7817-7832 Disease denotes clear pneumonia MESH:D011014
133 7956-7965 Disease denotes infection MESH:D007239
139 9679-9686 Species denotes Patient Tax:9606
140 9828-9835 Species denotes patient Tax:9606
141 9905-9912 Species denotes patient Tax:9606
142 9876-9885 Disease denotes Infection MESH:D007239
143 9934-9943 Disease denotes infection MESH:D007239
154 8470-8478 Species denotes patients Tax:9606
155 8512-8519 Species denotes Patient Tax:9606
156 8627-8636 Species denotes 2019-nCoV Tax:2697049
157 8881-8888 Species denotes Patient Tax:9606
158 9180-9187 Species denotes Patient Tax:9606
159 9373-9380 Species denotes Patient Tax:9606
160 8753-8762 Disease denotes infection MESH:D007239
161 9421-9436 Disease denotes virus infection MESH:D001102
162 9457-9465 Disease denotes infected MESH:D007239
163 9469-9478 Disease denotes infection MESH:D007239
172 10290-10298 Species denotes patients Tax:9606
173 10482-10489 Species denotes Patient Tax:9606
174 10698-10705 Species denotes patient Tax:9606
175 10836-10843 Species denotes patient Tax:9606
176 11195-11203 Species denotes patients Tax:9606
177 11389-11397 Species denotes patients Tax:9606
178 11572-11580 Species denotes patients Tax:9606
179 10281-10289 Disease denotes infected MESH:D007239
197 12098-12129 Gene denotes Angiotensin-converting enzyme 2 Gene:59272
198 12131-12135 Gene denotes ACE2 Gene:59272
199 12408-12412 Gene denotes ACE2 Gene:59272
200 12427-12431 Gene denotes ACE2 Gene:59272
201 13057-13061 Gene denotes ACE2 Gene:59272
202 11763-11770 Species denotes patient Tax:9606
203 11924-11931 Species denotes patient Tax:9606
204 12171-12180 Species denotes 2019-nCoV Tax:2697049
205 12257-12266 Species denotes 2019-nCoV Tax:2697049
206 12276-12292 Species denotes SARS-Coronavirus Tax:694009
207 12402-12407 Species denotes human Tax:9606
208 12462-12468 Species denotes humans Tax:9606
209 12741-12752 Species denotes coronavirus Tax:694448
210 13129-13140 Species denotes coronavirus Tax:694448
211 13171-13176 Species denotes swine Tax:9823
212 13264-13269 Species denotes human Tax:9606
213 12768-12786 Disease denotes pulmonary alveolus MESH:D008171
220 13513-13521 Species denotes patients Tax:9606
221 13639-13647 Species denotes patients Tax:9606
222 13938-13946 Species denotes patients Tax:9606
223 13961-13970 Species denotes 2019-nCoV Tax:2697049
224 13907-13919 Disease denotes dry coughing MESH:D003371
225 13947-13955 Disease denotes infected MESH:D007239
228 14592-14600 Species denotes patients Tax:9606
229 14749-14767 Disease denotes Infectious Disease MESH:D003141

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 27-30 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T2 34-39 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T3 294-299 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T4 394-397 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T5 426-431 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T6 548-551 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 559-564 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T8 643-648 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T9 655-658 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T10 834-837 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T11 899-904 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T12 991-1006 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T13 1064-1067 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T14 2458-2474 Body_part denotes white blood cell http://purl.org/sig/ont/fma/fma62852
T15 2470-2474 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T16 2479-2489 Body_part denotes lymphocyte http://purl.org/sig/ont/fma/fma62863
T17 2518-2525 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T18 2551-2560 Body_part denotes cytokines http://purl.org/sig/ont/fma/fma84050
T19 3204-3209 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T20 3362-3365 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T21 3419-3423 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T22 3494-3498 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T23 3622-3626 Body_part denotes Gene http://purl.org/sig/ont/fma/fma74402
T24 4605-4610 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T25 4672-4677 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T26 4771-4776 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T27 4871-4876 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T28 4934-4939 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T29 5386-5389 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T30 5407-5412 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T31 5436-5441 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T32 5481-5484 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T33 5518-5523 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T34 5568-5573 Body_part denotes Blood http://purl.org/sig/ont/fma/fma9670
T35 5613-5616 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T36 5642-5647 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T37 5936-5941 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T38 6367-6370 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T39 6494-6499 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T40 6510-6513 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T41 6679-6682 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T42 6724-6729 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T43 6746-6751 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T44 6801-6804 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T45 7124-7127 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T46 7131-7136 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T47 7543-7548 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T48 7850-7854 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T49 7892-7897 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T50 8236-8239 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T51 8287-8292 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T52 8495-8500 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T53 8507-8510 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T54 8705-8710 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T55 9083-9088 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T56 9242-9247 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T57 9492-9495 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T58 9516-9521 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T59 9744-9747 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T60 9751-9756 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T61 10035-10042 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T62 10124-10127 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T63 10143-10160 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T64 10252-10257 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T65 10358-10363 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T66 10370-10373 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T67 10447-10452 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T68 10568-10571 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T69 10579-10584 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T70 10868-10873 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T71 10968-10973 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T72 10988-10993 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T73 11090-11093 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T74 11106-11121 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T75 11229-11232 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T76 11654-11657 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T77 11686-11701 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T78 11804-11807 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T79 11901-11906 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T80 12060-12065 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T81 12246-12253 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T82 12353-12360 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T83 12476-12485 Body_part denotes epithelia http://purl.org/sig/ont/fma/fma9639
T84 12493-12508 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T85 12521-12538 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T86 12570-12587 Body_part denotes endothelial cells http://purl.org/sig/ont/fma/fma66772
T87 12582-12587 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T88 12768-12786 Body_part denotes pulmonary alveolus http://purl.org/sig/ont/fma/fma7318
T89 12819-12827 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T90 12877-12882 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T91 12946-12950 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T92 13011-13026 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T93 13177-13192 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T94 13270-13285 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T95 13352-13367 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T96 13494-13499 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T97 13547-13550 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T98 13558-13563 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T99 13603-13606 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T100 13614-13619 Body_part denotes stool http://purl.org/sig/ont/fma/fma64183
T101 13685-13688 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T102 13731-13734 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T103 13830-13836 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T104 14007-14013 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T105 14258-14261 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T106 14269-14274 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T107 14379-14382 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T108 14386-14391 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T109 14400-14415 Body_part denotes digestive tract http://purl.org/sig/ont/fma/fma317863
T110 14430-14447 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 34-39 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T2 294-299 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T3 426-431 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T4 559-564 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T5 643-648 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T6 899-904 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T7 991-1006 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T8 2464-2469 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 3204-3209 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T10 3850-3854 Body_part denotes tube http://purl.obolibrary.org/obo/UBERON_0000025
T11 4605-4610 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T12 4672-4677 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T13 4771-4776 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T14 4871-4876 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T15 4934-4939 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T16 5407-5412 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T17 5436-5441 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T18 5518-5523 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T19 5568-5573 Body_part denotes Blood http://purl.obolibrary.org/obo/UBERON_0000178
T20 5642-5647 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T21 5936-5941 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T22 6494-6499 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T23 6724-6729 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T24 6746-6751 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T25 7131-7136 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T26 7543-7548 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T27 7850-7854 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T28 7892-7897 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T29 8287-8292 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T30 8495-8500 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T31 8705-8710 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T32 9083-9088 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T33 9242-9247 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T34 9516-9521 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T35 9751-9756 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T36 10143-10160 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T37 10252-10257 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T38 10358-10363 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T39 10447-10452 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T40 10579-10584 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T41 10868-10873 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T42 10968-10973 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T43 10988-10993 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T44 11106-11121 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T45 11686-11701 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T46 11901-11906 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T47 12060-12065 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T48 12476-12485 Body_part denotes epithelia http://purl.obolibrary.org/obo/UBERON_0000483
T49 12493-12508 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T50 12499-12508 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T51 12521-12538 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T52 12778-12786 Body_part denotes alveolus http://purl.obolibrary.org/obo/UBERON_0003215
T53 12828-12834 Body_part denotes vessel http://purl.obolibrary.org/obo/UBERON_0000055
T54 12877-12882 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T55 13011-13026 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T56 13177-13192 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T57 13270-13285 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T58 13352-13367 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T59 13494-13499 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T60 13558-13563 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T61 13614-13619 Body_part denotes stool http://purl.obolibrary.org/obo/UBERON_0001988
T62 13830-13836 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T63 14007-14013 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T64 14269-14274 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T65 14386-14391 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T66 14400-14415 Body_part denotes digestive tract http://purl.obolibrary.org/obo/UBERON_0001555
T67 14430-14447 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p9683s29 12385-12396 MPA denotes interaction

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 183-204 Disease denotes (2019-nCoV) infection http://purl.obolibrary.org/obo/MONDO_0100096
T2 195-204 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T3 212-221 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 1625-1635 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T5 1704-1708 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 2427-2436 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 4046-4055 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 6075-6084 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T9 6161-6170 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T10 6950-6952 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T11 7618-7627 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 7739-7758 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T13 7749-7758 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 7823-7832 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 7956-7965 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 8045-8047 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T17 8753-8762 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 9047-9049 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T19 9156-9158 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T20 9421-9436 Disease denotes virus infection http://purl.obolibrary.org/obo/MONDO_0005108
T21 9427-9436 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 9469-9478 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 9605-9607 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T24 9876-9885 Disease denotes Infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 9934-9943 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T26 12276-12280 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 14749-14759 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 34-39 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T2 34-39 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T3 43-44 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 255-260 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T5 294-299 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T6 294-299 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T7 426-431 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T8 426-431 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T9 471-473 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T10 559-564 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T11 559-564 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T12 619-620 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 725-727 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T14 753-758 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T15 899-904 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T16 899-904 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T17 917-919 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T18 962-967 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 991-1006 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T20 1058-1063 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 1176-1179 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 1198-1207 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T23 1352-1355 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T24 1527-1536 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T25 1608-1613 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 1709-1714 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T27 2464-2469 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T28 2470-2474 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T29 2629-2634 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 2852-2857 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T31 2994-2999 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T32 3204-3209 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T33 3204-3209 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T34 3419-3423 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T35 3494-3498 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T36 3622-3626 http://purl.obolibrary.org/obo/OGG_0000000002 denotes Gene
T37 3800-3805 http://purl.obolibrary.org/obo/OGG_0000000002 denotes genes
T38 3850-3854 http://purl.obolibrary.org/obo/UBERON_0000025 denotes tube
T39 4007-4008 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 4018-4024 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T41 4503-4511 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T42 4503-4511 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial
T43 4605-4610 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T44 4605-4610 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T45 4638-4639 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T46 4771-4776 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T47 4771-4776 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T48 4871-4876 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T49 4871-4876 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T50 4921-4926 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T51 4934-4939 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T52 4934-4939 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T53 5120-5121 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T54 5125-5127 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T55 5316-5321 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T56 5407-5412 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T57 5407-5412 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T58 5414-5415 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T59 5432-5433 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T60 5436-5441 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T61 5436-5441 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T62 5510-5514 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T63 5518-5523 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T64 5518-5523 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T65 5568-5573 http://purl.obolibrary.org/obo/UBERON_0000178 denotes Blood
T66 5568-5573 http://www.ebi.ac.uk/efo/EFO_0000296 denotes Blood
T67 5633-5638 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T68 5642-5647 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T69 5642-5647 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T70 5743-5744 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 5865-5869 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T72 5922-5927 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T73 5936-5941 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T74 5936-5941 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T75 5996-6000 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2(A)
T76 6303-6308 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T77 6329-6332 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T78 6468-6470 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T79 6494-6499 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T80 6494-6499 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T81 6565-6566 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T82 6581-6587 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T83 6616-6622 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T84 6658-6659 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T85 6689-6691 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T86 6694-6696 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T87 6724-6729 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T88 6724-6729 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T89 6746-6751 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T90 6746-6751 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T91 6757-6763 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T92 6771-6772 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T93 6795-6800 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T94 6816-6818 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T95 6888-6893 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T96 7084-7085 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T97 7094-7095 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T98 7118-7123 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T99 7131-7136 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T100 7131-7136 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T101 7248-7256 http://purl.obolibrary.org/obo/CLO_0007225 denotes labelled
T102 7283-7286 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T103 7358-7361 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T104 7467-7468 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T105 7543-7548 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T106 7543-7548 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T107 7597-7598 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T108 7610-7611 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 7850-7854 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T110 7850-7854 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T111 7866-7871 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T112 7892-7897 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T113 7892-7897 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T114 7921-7923 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T115 7926-7928 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T116 7991-7994 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T117 8156-8161 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T118 8173-8175 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T119 8230-8235 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T120 8287-8292 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T121 8287-8292 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T122 8299-8301 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T123 8532-8533 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T124 8587-8589 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T125 8637-8642 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T126 8705-8710 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T127 8705-8710 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T128 8780-8783 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T129 8877-8879 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T130 8901-8902 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T131 8963-8964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T132 8965-8968 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T133 9083-9088 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T134 9083-9088 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T135 9115-9120 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T136 9242-9247 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T137 9242-9247 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T138 9259-9264 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T139 9334-9335 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T140 9402-9403 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T141 9421-9426 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T142 9516-9521 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T143 9516-9521 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T144 9690-9691 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T145 9696-9702 http://purl.obolibrary.org/obo/CLO_0001818 denotes (B), 5
T146 9738-9743 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T147 9751-9756 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T148 9751-9756 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T149 9758-9764 http://purl.obolibrary.org/obo/CLO_0007225 denotes Labels
T150 9872-9873 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T151 9918-9919 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T152 10006-10011 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T153 10252-10257 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T154 10252-10257 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T155 10258-10262 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T156 10406-10407 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T157 10447-10452 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T158 10447-10452 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T159 10502-10503 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T160 10716-10720 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2(A)
T161 10738-10739 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T162 10856-10857 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T163 11084-11089 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T164 11106-11121 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T165 11223-11228 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T166 11497-11502 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T167 11624-11625 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T168 11686-11701 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T169 11740-11745 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T170 11774-11775 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T171 11819-11821 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T172 11901-11906 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T173 11901-11906 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T174 12060-12065 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T175 12060-12065 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T176 12072-12074 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T177 12402-12407 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T178 12462-12468 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T179 12493-12508 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T180 12570-12587 http://purl.obolibrary.org/obo/CL_0000115 denotes endothelial cells
T181 12710-12715 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T182 12828-12834 http://purl.obolibrary.org/obo/UBERON_0000055 denotes vessel
T183 12854-12859 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T184 12877-12882 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T185 12877-12882 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T186 12907-12912 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T187 12940-12950 http://purl.obolibrary.org/obo/UBERON_0013702 denotes whole body
T188 12961-12966 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T189 13011-13026 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T190 13177-13192 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T191 13264-13269 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T192 13270-13285 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T193 13321-13326 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T194 13352-13367 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract
T195 13385-13390 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T196 13597-13602 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T197 13661-13662 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T198 13761-13762 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T199 13874-13879 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T200 14072-14073 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T201 14114-14119 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T202 14185-14190 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T203 14269-14274 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T204 14269-14274 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T205 14373-14378 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T206 14386-14391 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T207 14386-14391 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T208 14400-14415 http://purl.obolibrary.org/obo/UBERON_0001555 denotes digestive tract

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 52-61 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T2 2518-2525 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T3 3393-3397 Chemical denotes Acid http://purl.obolibrary.org/obo/CHEBI_37527
T4 3607-3614 Chemical denotes reagent http://purl.obolibrary.org/obo/CHEBI_33893
T5 3732-3737 Chemical denotes probe http://purl.obolibrary.org/obo/CHEBI_50406
T6 4451-4457 Chemical denotes Oxygen http://purl.obolibrary.org/obo/CHEBI_15379
T7 4512-4518 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T8 4551-4557 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T9 4594-4596 Chemical denotes Hg http://purl.obolibrary.org/obo/CHEBI_16170|http://purl.obolibrary.org/obo/CHEBI_25195
T11 10462-10467 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T12 12098-12109 Chemical denotes Angiotensin http://purl.obolibrary.org/obo/CHEBI_2719
T13 12246-12253 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T14 12353-12360 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3548-3571 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcriptional
T2 12802-12811 http://purl.obolibrary.org/obo/GO_0009056 denotes breakdown

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 212-221 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 2427-2436 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 2441-2446 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T4 4046-4055 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 6161-6170 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T6 6208-6213 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T7 6235-6247 Phenotype denotes dry coughing http://purl.obolibrary.org/obo/HP_0031246
T8 7225-7230 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 7232-7244 Phenotype denotes dry-coughing http://purl.obolibrary.org/obo/HP_0031246
T10 7648-7653 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T11 7668-7680 Phenotype denotes dry coughing http://purl.obolibrary.org/obo/HP_0031246
T12 7823-7832 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 13907-13919 Phenotype denotes dry coughing http://purl.obolibrary.org/obo/HP_0031246

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-95 Sentence denotes Detectable 2019-nCoV viral RNA in blood is a strong indicator for the further clinical severity
T2 96-126 Sentence denotes Emerging Microbes & Infections
T3 127-129 Sentence denotes W.
T4 130-141 Sentence denotes Chen et al.
T5 143-151 Sentence denotes Abstract
T6 152-160 Sentence denotes ABSTRACT
T7 161-365 Sentence denotes The novel coronavirus (2019-nCoV) infection caused pneumonia. we retrospectively analyzed the virus presence in the pharyngeal swab, blood, and the anal swab detected by real-time PCR in the clinical lab.
T8 366-490 Sentence denotes Unexpectedly, the 2109-nCoV RNA was readily detected in the blood (6 of 57 patients) and the anal swabs (11 of 28 patients).
T9 491-704 Sentence denotes Importantly, all of the 6 patients with detectable viral RNA in the blood cohort progressed to severe symptom stage, indicating a strong correlation of serum viral RNA with the disease severity (p-value = 0.0001).
T10 705-797 Sentence denotes Meanwhile, 8 of the 11 patients with annal swab virus-positive was in severe clinical stage.
T11 798-1007 Sentence denotes However, the concentration of viral RNA in the anal swab (Ct value = 24 + 39) was higher than in the blood (Ct value = 34 + 39) from patient 2, suggesting that the virus might replicate in the digestive tract.
T12 1008-1093 Sentence denotes Altogether, our results confirmed the presence of virus RNA in extra-pulmonary sites.
T13 1095-1325 Sentence denotes The 2019 novel coronavirus (2019-nCoV), originally outbreaking from Wuhan China, has transmitted in an extremely short period to 25 countries and infected over 31 000 individuals as of Feb 06, 2020, causing an international alarm.
T14 1326-1593 Sentence denotes Basic scientific research has achieved significantly in the investigation of viral origination [1,2], transmission and evolution [3], and unprecedented public health control actions in China have been activated and effectively prevented the otherwise dramatic spread.
T15 1594-1782 Sentence denotes The 2019-nCoV virus seems more infectious in its public transmission capacity compared to the well-known 2003 SARS virus in spite of the unavailability of convincingly scientific evidence.
T16 1783-1858 Sentence denotes The mechanism of viral transmission is still worthy of further exploration.
T17 1859-1955 Sentence denotes Currently, one urgent and critical challenge is to treat infected patients and save their lives.
T18 1956-2053 Sentence denotes Several studies have roughly described the overall clinical features of 2019-nCoV patients [4,5].
T19 2054-2356 Sentence denotes However, the more specific and classified clinical characteristics of the infected patients still require further investigation, particularly for those with severe symptoms, which is roughly estimated to be approximately 15–20 percent of totally confirmed cases based on the local data in our hospital.
T20 2357-2565 Sentence denotes Clinically, for those severe patients, the main symptoms of 2019-nCoV pneumonia are fever, decreased white blood cell and lymphocyte count, increased C reaction protein and abnormally expressed cytokines [6].
T21 2566-2739 Sentence denotes One remaining question to be resolved is whether the 2019-nCoV virus can replicate in extra-pulmonary sites, which might account for the deteriorated clinical manifestation.
T22 2740-2932 Sentence denotes In this study, we investigated whether the patients with severe clinical symptoms exhibited special profiles of virus replication or/and distribution compared to those only with mild symptoms.
T23 2933-3102 Sentence denotes Patients, who were confirmed to be infected by the 2019-nCoV virus, were firstly enrolled in or transferred to Guangzhou Eighth People’s Hospital for treatment purposes.
T24 3103-3199 Sentence denotes This study followed the guideline of the Ethics Committee of Guangzhou Eighth People’s Hospital.
T25 3200-3355 Sentence denotes All blood, pharyngeal swab, and anal swab samples were collected for diagnostic purposes in the laboratory and our study added no extra burden to patients.
T26 3356-3537 Sentence denotes Viral RNA was extracted with Nucleic Acid Isolation Kit (Da’an Gene Corporation, Cat: DA0630) on an automatic workstation Smart 32 (Da’an Gene Corporation) following the guidelines.
T27 3538-3702 Sentence denotes Real-time reverse transcriptional polymerase chain reaction (RT–PCR) reagent (Da’an Gene cooperation, Cat DA0930) was employed for viral detection per the protocol.
T28 3703-3855 Sentence denotes In brief, two PCR primer and probe sets, which target orf1ab (FAM reporter) and N (VIC reporter) genes separately, were added in the same reaction tube.
T29 3856-3929 Sentence denotes Positive and negative controls were included for each batch of detection.
T30 3930-4028 Sentence denotes Samples were considered to be viral positive when either or both set(s) gave a reliable signal(s).
T31 4029-4115 Sentence denotes All patients had pneumonia-based diseases but with diversified clinical manifestation.
T32 4116-4286 Sentence denotes To simplify data analysis, the patients were only classified as either mild or severe clinical symptom groups based on the guideline newly released by Chinese government.
T33 4287-4597 Sentence denotes Patients who were with at least one of the following symptom should be diagnosed to be severe case, 1) distress of respiratory with respiratory rate > = 30/min; 2) Oxygen saturation < = 93% in the rest state, and 3) arterial oxygen tension (PaO₂) over inspiratory oxygen fraction (FIO₂) of less than 300 mm Hg.
T34 4598-4731 Sentence denotes In the blood detection cohort (Figure 1(A)), patients who had at less one serum sample measurement with the PCR method were included.
T35 4732-4983 Sentence denotes In the 57, 6 cases were detected to be blood positive, all of them (100%) were severe in symptom requiring special care attention, and the blood of the rest 51 cases was without detectable virus in the blood, only 12 of them (23.5%) were severe cases.
T36 4984-5085 Sentence denotes The ratio of severe symptoms between these two groups was significantly different (p value = 0.0001).
T37 5086-5348 Sentence denotes In the anal swab cohort (Figure 1(B)), 11 of 28 cases were detected to be anal swab positive, 8 of them (72.7%) were with severe symptoms, which was significantly higher than that 4 (23.5%) of the rest 17 cases without detectable virus in anal were severe cases.
T38 5349-5358 Sentence denotes Figure 1.
T39 5359-5435 Sentence denotes Results of 2019-nCoV viral RNA detection in the blood (A) and anal swab (B).
T40 5436-5567 Sentence denotes Blood or anal swab positive represents viral RNA positive in at least one test of blood or anal swab samples from the same patient.
T41 5568-5691 Sentence denotes Blood or anal swab negative represents viral RNA negative in all tests of blood or anal swab samples from the same patient.
T42 5692-5833 Sentence denotes Severe represents that the patient is diagnosed as a severe symptom after expert consultation while mild represents the rest of the patients.
T43 5834-5882 Sentence denotes P values are shown (chi-square test, two sides).
T44 5883-5977 Sentence denotes Fortunately, two cases with detectable virus both in blood and anal swab cohort were recorded.
T45 5978-6248 Sentence denotes Patient 1 (Figure 2(A)) was admitted to ICU after enrollment evaluation and was highly suspected infection with 2019-nCoV because of his recent travelling from Wuhan and of confirmed pneumonia by radiographic diagnosis with 5-day fever and 1-day continuous dry coughing.
T46 6249-6333 Sentence denotes He was then confirmed to be infected by the 2019-nCoV virus on illness day 6 by CDC.
T47 6334-6486 Sentence denotes High concentrations of the viral RNA were detected in the pharyngeal swabs on illness days 5 (Ct = 17 + 25), 7, 8 (Ct = 25 + 26), and 11 (Ct = 15 + 25).
T48 6487-6647 Sentence denotes In the blood, no viral RNA was detected on day 5 but the sample on day 6 gave a weak positive signal (Ct = Neg+39), and then the signal was gone again on day 8.
T49 6648-6730 Sentence denotes On day 9, a low level of viral RNA (Ct = 36 + 41) was detected again in the blood.
T50 6731-6770 Sentence denotes On day 12, the blood lost signal again.
T51 6771-6934 Sentence denotes A high concentration of virus RNA (Ct = 23 + 27) was detected in the anal sample on day 13, on the day the 2019-nCoV virus was not detected in the pharyngeal swab.
T52 6935-7032 Sentence denotes Unfortunately, he was transferred out to another hospital after an emergency expert consultation.
T53 7033-7042 Sentence denotes Figure 2.
T54 7043-7151 Sentence denotes Diagram of viral detection in patient 1 (A) and 2 (B) with both detectable virus RNA in blood and anal swab.
T55 7152-7277 Sentence denotes Illness day represents the patients with clear clinical symptoms such as fever, dry-coughing is labelled over the first line.
T56 7278-7512 Sentence denotes ICU, CDC confirmed, and transfer indicates that the patient is in the ICU ward, CDC confirmation of viral positive, and transfer of patient out from ICU ward to another hospital to receive a higher level of medical care, respectively.
T57 7513-7576 Sentence denotes Ct value from the pharyngeal, blood and the anal swab is shown.
T58 7577-7861 Sentence denotes Patient 2 (Figure 2(B)), who had a clear infection history and started fever 5-day ago and dry coughing 2-day ago, was admitted with clinically highly suspect of 2019-nCoV infection, considering the radiographical diagnosis which indicated clear pneumonia in the bilateral lung lobes.
T59 7862-7951 Sentence denotes The virus was detected in his blood on illness day 7 (Ct = 34 + 36) and 8 (Ct = 38 + 38).
T60 7952-8004 Sentence denotes His infection was also informed by the CDC on day 8.
T61 8005-8216 Sentence denotes Because his disease advanced very fast, he was transferred to the ICU ward for special medical care requirements on day 9, on which day high titers of virus (Ct = 25 + 36) were detected in the pharyngeal sample.
T62 8217-8350 Sentence denotes Importantly, virus RNA was detected in all pharyngeal (Ct = 23 + 24), blood (Ct = 34 + 39) and anal (Ct = 24 + 29) samples on day 10.
T63 8351-8433 Sentence denotes He was transferred out to another hospital after an emergency expert consultation.
T64 8434-8511 Sentence denotes Finally, we described here the four patients with detectable serum viral RNA.
T65 8512-8794 Sentence denotes Patient 3 (Figure 3(A)) was transferred to the ICU directly on illness day 11 because of his severe condition, the 2019-nCoV virus was laboratory detected both in pharyngeal (Ct = 30 + 30) and blood samples (Ct = 37 + 39) on day 12, And his infection was confirmed by CDC on day 13.
T66 8795-8880 Sentence denotes Pharyngeal samples were PCR positive on days 14 and 17 and became negative on day 22.
T67 8881-8982 Sentence denotes Patient 4 (Figure 3(B)) was transferred to the ICU ward on the illness day 6 with a CDC confirmation.
T68 8983-9145 Sentence denotes His disease advanced pretty fast and became severe on day 7 and he was transferred to ICU after his blood sample was detected to be virus-positive (Ct = 32 + 37).
T69 9146-9179 Sentence denotes On day 9, he was transferred out.
T70 9180-9299 Sentence denotes Patient 5 (Figure 3(C)) was admitted on illness day 4 and his blood sample was virus-positive (Ct = 38 + Neg) on day 6.
T71 9300-9372 Sentence denotes Her disease progressed rapidly to a severe stage within the next 3 days.
T72 9373-9485 Sentence denotes Patient 6 (Figure 3(D)) with a clear history of virus infection was confirmed to be infected on infection day 7.
T73 9486-9578 Sentence denotes Viral RNA was detected in his blood sample on day 9, one day ahead of his transfer into ICU.
T74 9579-9638 Sentence denotes As his condition worsens, he was transferred out on day 13.
T75 9639-9648 Sentence denotes Figure 3.
T76 9649-9757 Sentence denotes Diagram of viral detection in Patient 3 (A), 4 (B), 5 (C) and 6 (D) with both detectable virus RNA in blood.
T77 9758-9800 Sentence denotes Labels are identical to those in Figure 2.
T78 9801-9875 Sentence denotes Severe represents that the patient is diagnosed to be severe symptoms (B).
T79 9876-9948 Sentence denotes Infection day represents the patient with a clear time of infection (D).
T80 9949-10061 Sentence denotes In this retrospective study, we analyzed the PCR data of virus detection in different tissues in our laboratory.
T81 10062-10244 Sentence denotes Firstly, our observation indicated that the presence of viral RNA outside of the respiratory tract might herald the severity of the disease and alarm the requirement of special care.
T82 10245-10481 Sentence denotes In the blood test cohort, all the 6 infected patients were in (or later progressed to) severe disease stage when serum viral RNA became detectable, which showed a significant difference compared to the blood negative group (p = 0.0001).
T83 10482-10645 Sentence denotes Patient 2 (Figure 2(B)), 5 (Figure 3(C)) and 6 (Figure 3(D)) all had detectable viral RNA in the serum before they progressed to the clinical severe symptom stage.
T84 10646-10936 Sentence denotes Unfortunately, we missed the earlier time points of patient 1 (Figure 2(A)) and 3 (Figure 3(A)) who were directly admitted to ICU on transfer to our hospital because of severe condition, of patient 4 (Figure 3(B)) who had serum sample collected one day post the diagnosis of severe illness.
T85 10937-11028 Sentence denotes We, fortunately, observed high serum viral load in serum within their severe illness stage.
T86 11029-11188 Sentence denotes In the anal swab cohort, we found that the presence of virus RNA in the anal digestive tract was also positively correlated with disease severity (p = 0.0102).
T87 11189-11318 Sentence denotes The 3 patients detected with anal virus RNA but in mild stage should be monitored whether they will progress to the severe stage.
T88 11319-11483 Sentence denotes We have summarized the information of approximately 70 percent of the patients in Guangzhou city, and the study represented nearly the whole picture of this region.
T89 11484-11613 Sentence denotes However, the virus outbroke in such an emergence, allowing no delay in waiting for more patients to further confirm the findings.
T90 11614-11758 Sentence denotes Secondly, a high concentration of viral RNA in anal swabs suggested the digestive tract might be one extra-pulmonary site for virus replication.
T91 11759-11919 Sentence denotes For patient 1, a high concentration of viral RNA (Ct = 23 + 27, on day 13) was detected in anal swab but not in pharyngeal (the same day) and blood (1 d ahead).
T92 11920-12097 Sentence denotes For patient 2, higher concentrations of viral RNAs were detected in anal swab (Ct = 24 + 39) and pharyngeal swab (Ct = 23 + 24) than in the blood (Ct = 34 + 39) on the same day.
T93 12098-12206 Sentence denotes Angiotensin-converting enzyme 2 (ACE2) still is one of the receptors for 2019-nCoV attachment and entry [2].
T94 12207-12417 Sentence denotes Intensive structural analysis of the S protein of 2019-nCoV with the SARS-Coronavirus suggested that several critical residues in the viral spike protein might confer favourable interaction with human ACE2 [7].
T95 12418-12716 Sentence denotes Of note, ACE2 is also abundantly present in humans in the epithelia of the small intestine besides the respiratory tract and is ubiquitously present in endothelial cells [8], which might provide possible routes of transmission, and might account for the high transmission capacity of the new virus.
T96 12717-12951 Sentence denotes We propose that rampant coronavirus replication in pulmonary alveolus results in the breakdown of the alveolar vessel and the subsequent virus leakage into the blood flow, through which the virus is disseminated across the whole body.
T97 12952-13113 Sentence denotes Then the virus succeeds in establishing reinfection in the digestive tract by using the highly expressed ACE2 receptor, which exacerbated the disease vice versa.
T98 13114-13290 Sentence denotes Bat originated coronavirus was found to replicate in the swine digestive tract recently, also suggesting the potential replication possibility in the human digestive tract [9].
T99 13291-13445 Sentence denotes Nevertheless, confirmation of virus transmission through the digestive tract warrants further virus isolation from the anal swab in high safety level lab.
T100 13446-13564 Sentence denotes Unfortunately, in our study, we did not collect stool samples from patients and did not pursue viral RNA in the stool.
T101 13565-13805 Sentence denotes But we believe the existence of virus RNA in the stool samples from these patients because that a large amount of viral RNA was detected in anal swabs and that viral RNA had also been detected in a case reported from the United States [10].
T102 13806-14210 Sentence denotes Also, we didn’t collect sputum and bronchoalveolar lavage fluid for virus detection because that the dry coughing characteristic of patients infected with 2019-nCoV prevents producing enough amount of sputum and that bronchoalveolar lavage fluid collection requires a sophisticated operation which increases virus exposure possibility of care providers to high concentrations of virus-containing aerosol.
T103 14211-14485 Sentence denotes In summary, we find that the presence of viral RNA in the blood and anal swab is positively correlated with the severe disease stage and that early monitoring of virus RNA in blood and the digestive tract on top of the respiratory tract might benefit the disease prediction.
T104 14487-14502 Sentence denotes Acknowledgement
T105 14503-14536 Sentence denotes We declare no competing interest.
T106 14537-14601 Sentence denotes We thank all the physicians and nurses who cared these patients.
T107 14602-14684 Sentence denotes This work was supported by National Natural Science Foundation of China Grant (No.
T108 14685-14801 Sentence denotes 81670536 and 81770593) and by the National Grand Program on Key Infectious Disease Control (2017ZX10202203-004-002).
T109 14803-14823 Sentence denotes Disclosure statement
T110 14824-14888 Sentence denotes No potential conflict of interest was reported by the author(s).