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PMC:7054935 / 2729-3181 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
93 4-9 Species denotes mouse Tax:10090
94 18-28 Species denotes SARS virus Tax:694009
95 98-106 Species denotes SARS CoV Tax:694009
96 148-152 Species denotes mice Tax:10090
97 175-179 Species denotes mice Tax:10090
98 185-193 Species denotes SARS-CoV Tax:694009
99 252-256 Species denotes mice Tax:10090
100 322-327 Species denotes mouse Tax:10090
101 400-405 Species denotes human Tax:9606
102 415-423 Species denotes patients Tax:9606
103 435-440 Species denotes mouse Tax:10090

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T172 4-9 NCBITaxon:10088 denotes mouse
T171 18-22 SP_10;NCBITaxon:10633 denotes SARS
T170 23-28 NCBITaxon:10239 denotes virus
T169 98-106 SP_10 denotes SARS CoV
T168 120-137 UBERON:0000065 denotes respiratory tract
T167 148-152 NCBITaxon:10088 denotes mice
T166 175-179 NCBITaxon:10088 denotes mice
T165 185-193 SP_10 denotes SARS-CoV
T164 210-221 GO:0006260 denotes replication
T163 226-230 UBERON:0002048 denotes lung
T162 252-256 NCBITaxon:10088 denotes mice
T161 288-295 SO:0000704 denotes genetic
T160 322-327 NCBITaxon:10088 denotes mouse
T159 400-405 SP_6;NCBITaxon:9606 denotes human
T158 435-440 NCBITaxon:10088 denotes mouse

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T12 120-137 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T13 226-230 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 406-411 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 120-137 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T2 226-230 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid_AGAC

Id Subject Object Predicate Lexical cue
p9248s12 210-221 MPA denotes replication

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T38 18-22 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T39 78-88 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T40 98-102 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 185-193 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 185-189 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T35 4-9 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T36 23-28 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T37 226-230 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T38 226-230 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T39 264-267 http://purl.obolibrary.org/obo/CLO_0007461 denotes M15
T40 322-327 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse
T41 400-411 http://purl.obolibrary.org/obo/CLO_0053065 denotes human cells
T42 435-440 http://purl.obolibrary.org/obo/CLO_0007836 denotes mouse

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 231-243 http://purl.obolibrary.org/obo/GO_0009405 denotes pathogenesis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T19 0-153 Sentence denotes The mouse-adapted SARS virus (MA15) [9] was generated by serial passage of an infectious wildtype SARS CoV clone in the respiratory tract of BALB/c mice.
T20 154-339 Sentence denotes After 15 passages in mice, the SARS-CoV gained elevated replication and lung pathogenesis in aged mice (hence M15), due to six coding genetic mutations associated with mouse adaptation.
T21 340-452 Sentence denotes It is likely that MA15 is highly attenuated to replicate in human cells or patients due to the mouse adaptation.