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PMC:7054527 / 4974-6327 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
219 64-69 Gene denotes spike Gene:43740568
220 564-595 Gene denotes angiotensin-converting enzyme 2 Gene:59272
221 597-601 Gene denotes ACE2 Gene:59272
222 670-674 Gene denotes ACE2 Gene:59272
223 776-780 Gene denotes ACE2 Gene:100144303
224 804-808 Gene denotes ACE2 Gene:59272
225 972-976 Gene denotes ACE2 Gene:59272
226 1044-1048 Gene denotes ACE2 Gene:59272
227 1134-1138 Gene denotes ACE2 Gene:59272
228 1213-1220 Gene denotes TMPRSS2 Gene:7113
229 1297-1304 Gene denotes TMPRSS2 Gene:7113
230 711-714 Gene denotes bat Gene:570
231 0-9 Species denotes 2019-nCoV Tax:2697049
232 32-43 Species denotes coronavirus Tax:11118
233 336-347 Species denotes coronavirus Tax:11118
234 503-512 Species denotes 2019-nCoV Tax:2697049
235 517-525 Species denotes SARS-CoV Tax:694009
236 527-536 Species denotes 2019-nCoV Tax:2697049
237 558-563 Species denotes human Tax:9606
238 631-639 Species denotes SARS-CoV Tax:694009
239 644-653 Species denotes 2019-nCoV Tax:2697049
240 704-709 Species denotes human Tax:9606
241 731-734 Species denotes pig Tax:9823
242 824-832 Species denotes SARS-CoV Tax:694009
243 921-928 Species denotes patient Tax:9606
244 951-960 Species denotes 2019-nCoV Tax:2697049
245 1002-1011 Species denotes 2019-nCoV Tax:2697049
246 1053-1062 Species denotes 2019-nCoV Tax:2697049
247 1168-1177 Species denotes 2019-nCoV Tax:2697049
248 1266-1275 Species denotes 2019-nCoV Tax:2697049
249 842-847 Species denotes human Tax:9606
250 1197-1203 Chemical denotes serine MESH:D012694
251 903-920 Disease denotes SARS-CoV-infected MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T22 70-77 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T23 175-183 Body_part denotes proteins http://purl.org/sig/ont/fma/fma67257
T24 193-196 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T25 271-283 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T26 323-330 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T27 460-470 Body_part denotes amino acid http://purl.org/sig/ont/fma/fma82739
T28 487-494 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T29 693-698 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T30 762-767 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T31 812-820 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T32 859-867 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T33 877-882 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T34 1065-1072 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T35 1197-1203 Body_part denotes serine http://purl.org/sig/ont/fma/fma82764
T36 1247-1254 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T12 877-882 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T39 517-525 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T40 517-521 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T41 631-639 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 631-635 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 824-832 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 824-828 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 903-911 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 903-907 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T43 86-94 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T44 166-174 http://purl.obolibrary.org/obo/UBERON_0000158 denotes membrane
T45 558-563 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T46 693-698 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T47 704-709 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T48 711-714 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T49 762-767 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T50 786-788 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T51 790-791 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T52 822-823 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T53 842-847 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T54 888-889 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 1332-1333 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T5 70-77 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T6 175-183 Chemical denotes proteins http://purl.obolibrary.org/obo/CHEBI_36080
T7 271-283 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T8 323-330 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T9 460-470 Chemical denotes amino acid http://purl.obolibrary.org/obo/CHEBI_33709
T10 460-465 Chemical denotes amino http://purl.obolibrary.org/obo/CHEBI_46882
T11 466-470 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T12 487-494 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T13 564-575 Chemical denotes angiotensin http://purl.obolibrary.org/obo/CHEBI_48433
T14 722-725 Chemical denotes cat http://purl.obolibrary.org/obo/CHEBI_32402
T15 1065-1072 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T16 1197-1203 Chemical denotes serine http://purl.obolibrary.org/obo/CHEBI_17822
T17 1247-1254 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T18 1305-1314 Chemical denotes inhibitor http://purl.obolibrary.org/obo/CHEBI_35222

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T34 0-316 Sentence denotes 2019-nCoV possessed the typical coronavirus structure with the “spike protein” in the membrane envelope30, and also expressed other polyproteins, nucleoproteins, and membrane proteins, such as RNA polymerase, 3-chymotrypsin-like protease, papain-like protease, helicase, glycoprotein, and accessory proteins10,11,30.
T35 317-435 Sentence denotes The S protein from coronavirus can bind to the receptors of the host to facilitate viral entry into target cells31,32.
T36 436-789 Sentence denotes Although there are four amino acid variations of S protein between 2019-nCoV and SARS-CoV, 2019-nCoV can also bind to the human angiotensin-converting enzyme 2 (ACE2), the same host receptor for SARS-CoV, as 2019-nCoV can bind to the ACE2 receptor from the cells from human, bat, civet cat, and pig, but it cannot bind to the cells without ACE211,33–35.
T37 790-1017 Sentence denotes A recombinant ACE2-Ig antibody, a SARS-CoV-specific human monoclonal antibody, and the serum from a convalescent SARS-CoV-infected patient, which can neutralize 2019-nCoV, confirmed ACE2 as the host receptor for 2019-nCoV36–39.
T38 1018-1183 Sentence denotes The high affinity between ACE2 and 2019-nCoV S protein also suggested that the population with higher expression of ACE2 might be more susceptible to 2019-nCoV40,41.
T39 1184-1353 Sentence denotes The cellular serine protease TMPRSS2 also contributed to the S-protein priming of 2019-nCoV, indicating that the TMPRSS2 inhibitor might constitute a treatment option36.

2_test

Id Subject Object Predicate Lexical cue
32127517-27578435-53455635 103-105 27578435 denotes 30
32127517-27578435-53455636 313-315 27578435 denotes 30
32127517-30567993-53455637 429-431 30567993 denotes 31
32127517-22816037-53455638 432-434 22816037 denotes 32
32127517-32065055-53455639 1011-1013 32065055 denotes 36
T63019 103-105 27578435 denotes 30
T4951 313-315 27578435 denotes 30
T6721 429-431 30567993 denotes 31
T53119 432-434 22816037 denotes 32
T24045 1011-1013 32065055 denotes 36