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PMC:7054527 / 1721-2963 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
71 37-45 Species denotes patients Tax:9606
72 457-473 Species denotes SARS coronavirus Tax:694009
73 475-483 Species denotes SARS-CoV Tax:694009
74 699-706 Species denotes patient Tax:9606
75 850-867 Species denotes novel coronavirus Tax:2697049
76 869-878 Species denotes 2019-nCOV Tax:2697049
77 917-930 Species denotes coronaviruses Tax:11118
78 943-949 Species denotes humans Tax:9606
79 1128-1145 Species denotes novel coronavirus Tax:2697049
80 1155-1165 Species denotes SARS-CoV-2 Tax:2697049
81 1222-1239 Species denotes novel coronavirus Tax:2697049
82 74-89 Disease denotes viral pneumonia
83 95-100 Disease denotes fever MESH:D005334
84 102-107 Disease denotes cough MESH:D003371
85 113-120 Disease denotes myalgia MESH:D063806
86 124-131 Disease denotes fatigue MESH:D005221
87 209-217 Disease denotes headache MESH:D006261
88 219-229 Disease denotes hemoptysis MESH:D006469
89 235-243 Disease denotes diarrhea MESH:D003967
90 327-347 Disease denotes respiratory diseases MESH:D012140
91 607-622 Disease denotes viral pneumonia
92 791-800 Disease denotes pneumonia MESH:D011014
93 1002-1011 Disease denotes pneumonia MESH:D011014
94 1016-1036 Disease denotes Corona Virus Disease MESH:D018352
95 1038-1045 Disease denotes COVID19 MESH:C000657245

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T11 146-151 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T12 190-196 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T13 725-731 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T14 740-751 Body_part denotes nucleotides http://purl.org/sig/ont/fma/fma82740

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T8 146-151 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T9 190-196 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T11 74-89 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T12 80-89 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T13 257-267 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T14 406-439 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T15 441-445 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T16 457-461 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T17 475-483 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 475-479 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 565-575 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T20 607-622 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T21 613-622 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 760-770 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T23 785-800 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T24 791-800 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T25 996-1011 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T26 1002-1011 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T27 1038-1045 Disease denotes COVID19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 1155-1163 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T29 1155-1159 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T17 146-151 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T18 305-310 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T19 305-310 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T20 529-530 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 582-585 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 678-679 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 684-689 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 848-849 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T25 1023-1028 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T26 1098-1105 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T2 740-751 Chemical denotes nucleotides http://purl.obolibrary.org/obo/CHEBI_36976

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-247 Sentence denotes The typical clinical symptoms of the patients who suffered from the novel viral pneumonia were fever, cough, and myalgia or fatigue with abnormal chest CT, and the less common symptoms were sputum production, headache, hemoptysis, and diarrhea4–6.
T16 248-351 Sentence denotes This new infectious agent is more likely to affect older males to cause severe respiratory diseases7,8.
T17 352-635 Sentence denotes Some of the clinical symptoms were different from the severe acute respiratory syndrome (SARS) caused by SARS coronavirus (SARS-CoV) that happened in 2002–2003, indicating that a new person-to-person transmission infectious agent has caused this emergent viral pneumonia outbreak8,9.
T18 636-755 Sentence denotes Chinese researchers have quickly isolated a new virus from the patient and sequenced its genome (29,903 nucleotides)10.
T19 756-952 Sentence denotes The infectious agent of this viral pneumonia happenening in Wuhan was finally identified as a novel coronavirus (2019-nCOV), the seventh member of the family of coronaviruses that infect humans11.
T20 953-1242 Sentence denotes On 11th February 2020, WHO named the novel viral pneumonia as “Corona Virus Disease (COVID19)”, while the international Committee on Taxonomy of Viruses (ICTV) suggested this novel coronavirus name as “SARS-CoV-2” due to the phylogenetic and taxonomic analysis of this novel coronavirus12.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T7 80-89 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 95-100 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T9 102-107 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T10 113-120 Phenotype denotes myalgia http://purl.obolibrary.org/obo/HP_0003326
T11 124-131 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T12 209-217 Phenotype denotes headache http://purl.obolibrary.org/obo/HP_0002315
T13 219-229 Phenotype denotes hemoptysis http://purl.obolibrary.org/obo/HP_0002105
T14 613-622 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 791-800 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T16 1002-1011 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

2_test

Id Subject Object Predicate Lexical cue
32127517-31986264-53455624 243-244 31986264 denotes 4
32127517-32007143-53455625 347-348 32007143 denotes 7
32127517-31986261-53455626 349-350 31986261 denotes 8
32127517-31986261-53455627 631-632 31986261 denotes 8
T56375 243-244 31986264 denotes 4
T34499 347-348 32007143 denotes 7
T80906 349-350 31986261 denotes 8
T66250 631-632 31986261 denotes 8