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PMC:7050114 / 925-2813 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
24 48-59 Species denotes coronavirus Tax:694448
25 67-84 Species denotes novel coronavirus Tax:2697049
26 86-95 Species denotes 2019-nCoV Tax:2697049
27 325-333 Species denotes patients Tax:9606
28 428-436 Species denotes patients Tax:9606
29 100-108 Disease denotes COVID-19 MESH:C000657245
30 146-154 Disease denotes COVID-19 MESH:C000657245
31 244-249 Disease denotes fever MESH:D005334
32 276-281 Disease denotes cough MESH:D003371
33 287-303 Disease denotes invasive lesions MESH:D009361
34 394-409 Disease denotes viral pneumonia
35 449-490 Disease denotes dyspnea and respiratory distress syndrome MESH:D012128
45 534-542 Species denotes patients Tax:9606
46 525-533 Disease denotes infected MESH:D007239
47 616-620 Disease denotes SARS MESH:D045169
48 626-658 Disease denotes Middle East respiratory syndrome MESH:D018352
49 660-664 Disease denotes MERS MESH:D018352
50 825-834 Disease denotes infection MESH:D007239
51 918-924 Disease denotes deaths MESH:D003643
52 987-996 Disease denotes infection MESH:D007239
53 1009-1015 Disease denotes deaths MESH:D003643
57 1408-1419 Species denotes coronavirus Tax:694448
58 1858-1869 Species denotes coronavirus Tax:694448
59 1723-1731 Disease denotes COVID-19 MESH:C000657245

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T24 48-59 NCBITaxon:11118 denotes coronavirus
T23 73-84 NCBITaxon:11118 denotes coronavirus
T22 86-95 SP_7 denotes 2019-nCoV
T21 100-108 SP_7 denotes COVID-19
T20 146-154 SP_7 denotes COVID-19
T19 276-281 UBERON:0002048 denotes cough
T18 312-317 UBERON:0000170 denotes lungs
T17 360-383 UBERON:0001558 denotes lower respiratory tract
T16 394-399 NCBITaxon:10239 denotes viral
T15 461-472 UBERON:0001004 denotes respiratory
T14 616-620 SP_10 denotes SARS
T13 638-649 UBERON:0001004 denotes respiratory
T11 918-924 GO:0016265 denotes deaths
T10 1009-1015 GO:0016265 denotes deaths
T9 1408-1419 NCBITaxon:11118 denotes coronavirus
T8 1723-1731 SP_7 denotes COVID-19
T7 1858-1869 NCBITaxon:11118 denotes coronavirus
T12 660-664 SP_9 denotes MERS

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 312-317 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 360-383 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 360-383 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 366-383 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T3 100-108 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 146-154 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 394-409 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T6 400-409 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 461-490 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T8 580-614 Disease denotes Severe Acute Respiratory Syndromes http://purl.obolibrary.org/obo/MONDO_0005091
T9 616-620 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 825-834 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 987-996 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 1723-1731 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T3 34-35 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 155-158 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 312-317 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T6 360-383 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T7 505-508 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 509-510 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 679-680 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 962-965 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 1199-1200 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 1236-1237 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1260-1263 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T14 1264-1265 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 1333-1345 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T16 1356-1357 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 1440-1441 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 1571-1572 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1778-1779 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 265-274 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 244-249 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 251-274 Phenotype denotes difficulty in breathing http://purl.obolibrary.org/obo/HP_0002098
T3 276-281 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 400-409 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 449-456 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T6 461-481 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T8 0-12 Sentence denotes Introduction
T9 13-141 Sentence denotes Since December 2019, a new type of coronavirus called novel coronavirus (2019-nCoV, or COVID-19) was identified in Wuhan, China.
T10 142-211 Sentence denotes The COVID-19 has then rapidly spread to all over China and the world.
T11 212-338 Sentence denotes It can cause symptoms including fever, difficulty in breathing, cough, and invasive lesions on both lungs of the patients [1].
T12 339-410 Sentence denotes It can spread to the lower respiratory tract and cause viral pneumonia.
T13 411-491 Sentence denotes In severe cases, patients suffer from dyspnea and respiratory distress syndrome.
T14 492-701 Sentence denotes The pandemic has a big number of infected patients that far exceeded the equivalents of Severe Acute Respiratory Syndromes (SARS) and Middle East respiratory syndrome (MERS), though with a lower fatality rate.
T15 702-938 Sentence denotes According to the surveillance statistics reported by the Chinese government, by February 19, 2020, the number of confirmed infection cases increased to 44,412 for Wuhan and 74,280 for whole China, with 1497 and 2009 deaths respectively.
T16 939-1025 Sentence denotes Moreover, the pandemic has caused 919 confirmed infection cases and 3 deaths globally.
T17 1026-1111 Sentence denotes Therefore, Wuhan city and Hubei Province are the targets for intensive interventions.
T18 1112-1189 Sentence denotes Otherwise, the spread would have been much faster to all China and the world.
T19 1190-1315 Sentence denotes Wuhan is a transportation hub of China, it is a highly dense city and has a large population of more than 14 million in 2019.
T20 1316-1491 Sentence denotes The World Health Organization (WHO) had a meeting on January 30, 2020 and they declared the coronavirus outbreak from China a public health emergency of international concern.
T21 1492-1650 Sentence denotes Further, there are lots of concerns and debates all over the world, indicating a need for more understanding of China’s systems in responding to the outbreak.
T22 1651-1888 Sentence denotes Therefore, based on our firsthand experience of working with few of the COVID-19 cases, the purpose of this article is to have a brief report of current development, challenges, and future directions of the coronavirus outbreak in Wuhan.