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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 4-21 Species denotes novel coronavirus Tax:2697049
7 61-78 Species denotes novel coronavirus Tax:2697049
8 80-89 Species denotes 2019-nCoV Tax:2697049
9 94-102 Disease denotes COVID-19 MESH:C000657245
10 210-220 Disease denotes infections MESH:D007239
11 225-231 Disease denotes deaths MESH:D003643
24 973-984 Species denotes coronavirus Tax:694448
25 992-1009 Species denotes novel coronavirus Tax:2697049
26 1011-1020 Species denotes 2019-nCoV Tax:2697049
27 1250-1258 Species denotes patients Tax:9606
28 1353-1361 Species denotes patients Tax:9606
29 1025-1033 Disease denotes COVID-19 MESH:C000657245
30 1071-1079 Disease denotes COVID-19 MESH:C000657245
31 1169-1174 Disease denotes fever MESH:D005334
32 1201-1206 Disease denotes cough MESH:D003371
33 1212-1228 Disease denotes invasive lesions MESH:D009361
34 1319-1334 Disease denotes viral pneumonia
35 1374-1415 Disease denotes dyspnea and respiratory distress syndrome MESH:D012128
45 1459-1467 Species denotes patients Tax:9606
46 1450-1458 Disease denotes infected MESH:D007239
47 1541-1545 Disease denotes SARS MESH:D045169
48 1551-1583 Disease denotes Middle East respiratory syndrome MESH:D018352
49 1585-1589 Disease denotes MERS MESH:D018352
50 1750-1759 Disease denotes infection MESH:D007239
51 1843-1849 Disease denotes deaths MESH:D003643
52 1912-1921 Disease denotes infection MESH:D007239
53 1934-1940 Disease denotes deaths MESH:D003643
57 2333-2344 Species denotes coronavirus Tax:694448
58 2783-2794 Species denotes coronavirus Tax:694448
59 2648-2656 Disease denotes COVID-19 MESH:C000657245
63 3244-3261 Species denotes novel coronavirus Tax:2697049
64 3416-3420 Disease denotes SARS MESH:D045169
65 3650-3659 Disease denotes pneumonia MESH:D011014
74 4679-4689 Species denotes collection Tax:1768868
75 4695-4703 Species denotes patients Tax:9606
76 4842-4850 Species denotes patients Tax:9606
77 4865-4871 Species denotes people Tax:9606
78 5039-5047 Species denotes patients Tax:9606
79 5075-5083 Species denotes patients Tax:9606
80 4833-4841 Disease denotes infected MESH:D007239
81 5029-5038 Disease denotes infection MESH:D007239
85 5446-5454 Disease denotes COVID-19 MESH:C000657245
86 5541-5549 Disease denotes infected MESH:D007239
87 5717-5727 Disease denotes infections MESH:D007239
94 6105-6113 Species denotes patients Tax:9606
95 6287-6293 Species denotes people Tax:9606
96 5902-5910 Disease denotes COVID-19 MESH:C000657245
97 6119-6127 Disease denotes COVID-19 MESH:C000657245
98 6128-6138 Disease denotes infections MESH:D007239
99 6242-6246 Disease denotes SARS MESH:D045169
105 7257-7263 Species denotes people Tax:9606
106 7576-7582 Species denotes people Tax:9606
107 7306-7314 Disease denotes infected MESH:D007239
108 7476-7484 Disease denotes infected MESH:D007239
109 7655-7663 Disease denotes infected MESH:D007239
113 7809-7815 Species denotes people Tax:9606
114 7962-7970 Species denotes patients Tax:9606
115 7824-7832 Disease denotes infected MESH:D007239
123 8645-8648 Gene denotes TDF Gene:6736
124 8785-8789 Species denotes Lian Tax:155640
125 8441-8460 Chemical denotes Lopinavir/Ritonavir MESH:C558899
126 8546-8556 Chemical denotes Remdesivir MESH:C000606551
127 8969-8990 Chemical denotes chloroquine phosphate MESH:C023676
128 8418-8426 Disease denotes COVID-19 MESH:C000657245
129 8852-8860 Disease denotes COVID-19 MESH:C000657245
136 6424-6430 Species denotes humans Tax:9606
137 6405-6413 Disease denotes COVID-19 MESH:C000657245
138 6601-6620 Disease denotes recessive infection MESH:D007239
139 6754-6764 Disease denotes infections MESH:D007239
140 6769-6775 Disease denotes deaths MESH:D003643
141 6835-6839 Disease denotes SARS MESH:D045169
145 9887-9893 Species denotes people Tax:9606
146 9523-9531 Disease denotes COVID-19 MESH:C000657245
147 9934-9942 Disease denotes COVID-19 MESH:C000657245
150 10176-10185 Species denotes 2019-nCoV Tax:2697049
151 10189-10197 Disease denotes COVID-19 MESH:C000657245
153 10262-10266 Disease denotes MERS MESH:D018352
155 10267-10299 Disease denotes Middle East respiratory syndrome MESH:D018352
157 10300-10304 Disease denotes SARS MESH:D045169
159 10377-10406 Chemical denotes Tenofovir Disoproxil Fumarate MESH:D000068698

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T79 9869-9876 GO:0065007 denotes control
T78 9887-9893 NCBITaxon:9606 denotes people
T77 9934-9942 SP_7 denotes COVID-19
T76 9978-9990 GO:0065007 denotes controllable
T75 10151-10159 CHEBI:75958;CHEBI:75958 denotes solution
T74 6405-6413 SP_7 denotes COVID-19
T73 6424-6430 NCBITaxon:9606 denotes humans
T72 6459-6465 NCBITaxon:9606 denotes person
T71 6469-6475 NCBITaxon:9606 denotes person
T70 6552-6557 NCBITaxon:10239 denotes virus
T69 6769-6775 GO:0016265 denotes deaths
T68 6835-6839 SP_10 denotes SARS
T67 6874-6884 GO:0065007 denotes controlled
T66 7257-7263 NCBITaxon:9606 denotes people
T65 7356-7361 NCBITaxon:10239 denotes virus
T64 7501-7505 GO:0016265 denotes died
T63 7576-7582 NCBITaxon:9606 denotes people
T61 8374-8379 CHEBI:23888;CHEBI:23888 denotes drugs
T60 8418-8426 SP_7 denotes COVID-19
T58 8451-8460 DG_30 denotes Ritonavir
T57 8462-8472 CHEBI:60783;CHEBI:60783 denotes Nucleoside
T56 8489-8498 DG_29 denotes ribavirin
T55 8515-8525 CHEBI:35222;CHEBI:35222 denotes inhibitors
T54 8532-8543 CHEBI:7798;CHEBI:7798 denotes oseltamivir
T53 8546-8556 DG_28 denotes Remdesivir
T52 8565-8578 CHEBI:36807;CHEBI:36807 denotes hydrochloride
T51 8580-8593 GO:0032774 denotes RNA synthesis
T50 8594-8604 CHEBI:35222;CHEBI:35222 denotes inhibitors
T49 8614-8643 CHEBI:63718;CHEBI:63718 denotes Tenofovir disoproxil fumarate
T48 8651-8674 CHEBI:35472;CHEBI:35472 denotes anti-inflammatory drugs
T47 8703-8712 CHEBI:36357;CHEBI:36357 denotes molecules
T46 8852-8860 SP_7 denotes COVID-19
T45 8901-8906 CHEBI:23888;CHEBI:23888 denotes drugs
T44 8969-8980 CHEBI:3638;DG_10;CHEBI:3638 denotes chloroquine
T43 8981-8990 CHEBI:18367;CHEBI:18367 denotes phosphate
T42 9049-9057 CHEBI:75958;CHEBI:75958 denotes solution
T41 3250-3261 NCBITaxon:11118 denotes coronavirus
T40 3416-3420 SP_10 denotes SARS
T39 3579-3584 NCBITaxon:10239 denotes virus
T38 3684-3690 SO:0001026 denotes genome
T37 3712-3717 NCBITaxon:10239 denotes virus
T36 4539-4546 GO:0065007 denotes control
T35 4865-4871 NCBITaxon:9606 denotes people
T34 5446-5454 SP_7 denotes COVID-19
T33 5522-5528 NCBITaxon:1 denotes person
T32 5567-5572 UBERON:0002398 denotes hands
T31 5593-5604 UBERON:0001811 denotes conjunctiva
T30 5644-5649 UBERON:0002398 denotes hands
T29 5890-5900 GO:0065007 denotes regulation
T28 5902-5910 SP_7 denotes COVID-19
T27 6119-6127 SP_7 denotes COVID-19
T26 6242-6246 SP_10 denotes SARS
T25 6287-6293 NCBITaxon:9606 denotes people
T24 973-984 NCBITaxon:11118 denotes coronavirus
T23 998-1009 NCBITaxon:11118 denotes coronavirus
T22 1011-1020 SP_7 denotes 2019-nCoV
T21 1025-1033 SP_7 denotes COVID-19
T20 1071-1079 SP_7 denotes COVID-19
T19 1201-1206 UBERON:0002048 denotes cough
T18 1237-1242 UBERON:0000170 denotes lungs
T17 1285-1308 UBERON:0001558 denotes lower respiratory tract
T16 1319-1324 NCBITaxon:10239 denotes viral
T15 1386-1397 UBERON:0001004 denotes respiratory
T14 1541-1545 SP_10 denotes SARS
T13 1563-1574 UBERON:0001004 denotes respiratory
T11 1843-1849 GO:0016265 denotes deaths
T10 1934-1940 GO:0016265 denotes deaths
T9 2333-2344 NCBITaxon:11118 denotes coronavirus
T8 2648-2656 SP_7 denotes COVID-19
T7 2783-2794 NCBITaxon:11118 denotes coronavirus
T5 67-78 NCBITaxon:11118 denotes coronavirus
T4 80-89 SP_7 denotes 2019-nCoV
T3 94-102 SP_7 denotes COVID-19
T2 225-231 GO:0016265 denotes deaths
T1 661-666 CHEBI:23888;CHEBI:23888 denotes drugs
T6 10-21 NCBITaxon:11118 denotes coronavirus
T62 7809-7815 NCBITaxon:9606 denotes people
T80 9523-9531 SP_7 denotes COVID-19
T12 1585-1589 SP_9 denotes MERS
T59 8441-8450 DG_23 denotes Lopinavir

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 1237-1242 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T2 1285-1308 Body_part denotes lower respiratory tract http://purl.org/sig/ont/fma/fma45662
T3 3684-3690 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116
T4 3907-3911 Body_part denotes back http://purl.org/sig/ont/fma/fma25056
T5 5593-5604 Body_part denotes conjunctiva http://purl.org/sig/ont/fma/fma59011
T6 8580-8583 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 8684-8692 Body_part denotes hormones http://purl.org/sig/ont/fma/fma12278
T8 8772-8780 Body_part denotes Capsules http://purl.org/sig/ont/fma/fma85272
T9 8803-8810 Body_part denotes Capsule http://purl.org/sig/ont/fma/fma85272

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1285-1308 Body_part denotes lower respiratory tract http://purl.obolibrary.org/obo/UBERON_0001558
T2 1291-1308 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T3 5567-5572 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T4 5593-5604 Body_part denotes conjunctiva http://purl.obolibrary.org/obo/UBERON_0001811
T5 5644-5649 Body_part denotes hands http://purl.obolibrary.org/obo/UBERON_0002398
T6 8803-8810 Body_part denotes Capsule http://purl.obolibrary.org/obo/UBERON_0003893

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 94-102 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 210-220 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T3 1025-1033 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 1071-1079 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 1319-1334 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T6 1325-1334 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T7 1386-1415 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T8 1505-1539 Disease denotes Severe Acute Respiratory Syndromes http://purl.obolibrary.org/obo/MONDO_0005091
T9 1541-1545 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 1750-1759 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1912-1921 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 2648-2656 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 3416-3420 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T14 3650-3659 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 5029-5038 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T16 5446-5454 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 5553-5555 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319
T18 5717-5727 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T19 5902-5910 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T20 6119-6127 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T21 6128-6138 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T22 6242-6246 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T23 6405-6413 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T24 6611-6620 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 6754-6764 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T26 6835-6839 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T27 8418-8426 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T28 8852-8860 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T29 9523-9531 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T30 9934-9942 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T31 10189-10197 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 10300-10304 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T33 10305-10339 Disease denotes Severe Acute Respiratory Syndromes http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 142-145 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 325-326 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T3 959-960 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 1080-1083 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 1237-1242 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T6 1285-1308 http://purl.obolibrary.org/obo/UBERON_0001558 denotes lower respiratory tract
T7 1430-1433 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 1434-1435 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1604-1605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1887-1890 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 2124-2125 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 2161-2162 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 2185-2188 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T14 2189-2190 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 2258-2270 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T16 2281-2282 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 2365-2366 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2496-2497 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 2703-2704 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 2904-2907 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T21 3242-3243 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 3311-3312 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 3512-3515 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T24 3535-3540 http://purl.obolibrary.org/obo/UBERON_0007688 denotes field
T25 3579-3584 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 3624-3625 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 3712-3717 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T28 4273-4274 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 4337-4344 http://purl.obolibrary.org/obo/PR_000001318 denotes selling
T30 4436-4438 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T31 5520-5521 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T32 5593-5604 http://purl.obolibrary.org/obo/UBERON_0001811 denotes conjunctiva
T33 5593-5604 http://www.ebi.ac.uk/efo/EFO_0000374 denotes conjunctiva
T34 5744-5747 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T35 5954-5958 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T36 6248-6250 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T37 6424-6430 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T38 6552-6557 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T39 7099-7100 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 7356-7361 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T41 7433-7435 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T42 8288-8291 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T43 8991-8994 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T44 9146-9149 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T45 9333-9336 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T46 10216-10219 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T47 10424-10436 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T48 10598-10600 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T49 10598-10600 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T50 10694-10696 http://purl.obolibrary.org/obo/CLO_0003622 denotes HB

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 661-666 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T2 8374-8379 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T3 8441-8450 Chemical denotes Lopinavir http://purl.obolibrary.org/obo/CHEBI_31781
T4 8462-8472 Chemical denotes Nucleoside http://purl.obolibrary.org/obo/CHEBI_33838
T5 8489-8498 Chemical denotes ribavirin http://purl.obolibrary.org/obo/CHEBI_63580
T6 8501-8525 Chemical denotes Neuraminidase inhibitors http://purl.obolibrary.org/obo/CHEBI_52425
T7 8515-8525 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T8 8532-8543 Chemical denotes oseltamivir http://purl.obolibrary.org/obo/CHEBI_7798
T9 8565-8578 Chemical denotes hydrochloride http://purl.obolibrary.org/obo/CHEBI_36807
T10 8594-8604 Chemical denotes inhibitors http://purl.obolibrary.org/obo/CHEBI_35222
T11 8614-8643 Chemical denotes Tenofovir disoproxil fumarate http://purl.obolibrary.org/obo/CHEBI_63718
T12 8635-8643 Chemical denotes fumarate http://purl.obolibrary.org/obo/CHEBI_29806
T13 8645-8648 Chemical denotes TDF http://purl.obolibrary.org/obo/CHEBI_63718
T14 8651-8674 Chemical denotes anti-inflammatory drugs http://purl.obolibrary.org/obo/CHEBI_35472
T15 8669-8674 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T16 8684-8692 Chemical denotes hormones http://purl.obolibrary.org/obo/CHEBI_24621
T17 8703-8712 Chemical denotes molecules http://purl.obolibrary.org/obo/CHEBI_25367
T18 8745-8748 Chemical denotes TCM http://purl.obolibrary.org/obo/CHEBI_145500
T19 8901-8906 Chemical denotes drugs http://purl.obolibrary.org/obo/CHEBI_23888
T20 8969-8980 Chemical denotes chloroquine http://purl.obolibrary.org/obo/CHEBI_3638
T21 8981-8990 Chemical denotes phosphate http://purl.obolibrary.org/obo/CHEBI_18367|http://purl.obolibrary.org/obo/CHEBI_26020|http://purl.obolibrary.org/obo/CHEBI_35780|http://purl.obolibrary.org/obo/CHEBI_43474
T25 9049-9057 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T26 9567-9576 Chemical denotes antiviral http://purl.obolibrary.org/obo/CHEBI_22587
T27 10151-10159 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T28 10340-10343 Chemical denotes TCM http://purl.obolibrary.org/obo/CHEBI_145500
T29 10373-10376 Chemical denotes TDF http://purl.obolibrary.org/obo/CHEBI_63718
T30 10506-10510 Chemical denotes GHRP http://purl.obolibrary.org/obo/CHEBI_135890
T31 10598-10600 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1190-1199 http://purl.obolibrary.org/obo/GO_0007585 denotes breathing
T2 4345-4351 http://purl.obolibrary.org/obo/GO_0060361 denotes flight
T3 5890-5900 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T4 8580-8593 http://purl.obolibrary.org/obo/GO_0032774 denotes RNA synthesis
T5 8584-8593 http://purl.obolibrary.org/obo/GO_0009058 denotes synthesis

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1169-1174 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 1176-1199 Phenotype denotes difficulty in breathing http://purl.obolibrary.org/obo/HP_0002098
T3 1201-1206 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T4 1325-1334 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 1374-1381 Phenotype denotes dyspnea http://purl.obolibrary.org/obo/HP_0002094
T6 1386-1406 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T7 3650-3659 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-46 Sentence denotes The novel coronavirus outbreak in Wuhan, China
T2 48-56 Sentence denotes Abstract
T3 57-190 Sentence denotes The novel coronavirus (2019-nCoV, or COVID-19) epidemic first broke out in Wuhan and has been spreading in whole China and the world.
T4 191-324 Sentence denotes The numbers of new infections and deaths in Wuhan are still increasing, which have posed major public health and governance concerns.
T5 325-623 Sentence denotes A series of mandatory actions have been taken by the municipal and provincial governments supported by the central government, such as measures to restrict travels across cities, case detection and contact tracing, quarantine, guidance and information to the public, detection kit development, etc.
T6 624-799 Sentence denotes Challenges such as lacking effective drugs, insufficient hospital services and medical supplies, logistics, etc. have much alleviated with the solidarity of the whole society.
T7 800-923 Sentence denotes The pandemic will definitely be ended with the continuous efforts of both national and international multi-sectoral bodies.
T8 925-937 Sentence denotes Introduction
T9 938-1066 Sentence denotes Since December 2019, a new type of coronavirus called novel coronavirus (2019-nCoV, or COVID-19) was identified in Wuhan, China.
T10 1067-1136 Sentence denotes The COVID-19 has then rapidly spread to all over China and the world.
T11 1137-1263 Sentence denotes It can cause symptoms including fever, difficulty in breathing, cough, and invasive lesions on both lungs of the patients [1].
T12 1264-1335 Sentence denotes It can spread to the lower respiratory tract and cause viral pneumonia.
T13 1336-1416 Sentence denotes In severe cases, patients suffer from dyspnea and respiratory distress syndrome.
T14 1417-1626 Sentence denotes The pandemic has a big number of infected patients that far exceeded the equivalents of Severe Acute Respiratory Syndromes (SARS) and Middle East respiratory syndrome (MERS), though with a lower fatality rate.
T15 1627-1863 Sentence denotes According to the surveillance statistics reported by the Chinese government, by February 19, 2020, the number of confirmed infection cases increased to 44,412 for Wuhan and 74,280 for whole China, with 1497 and 2009 deaths respectively.
T16 1864-1950 Sentence denotes Moreover, the pandemic has caused 919 confirmed infection cases and 3 deaths globally.
T17 1951-2036 Sentence denotes Therefore, Wuhan city and Hubei Province are the targets for intensive interventions.
T18 2037-2114 Sentence denotes Otherwise, the spread would have been much faster to all China and the world.
T19 2115-2240 Sentence denotes Wuhan is a transportation hub of China, it is a highly dense city and has a large population of more than 14 million in 2019.
T20 2241-2416 Sentence denotes The World Health Organization (WHO) had a meeting on January 30, 2020 and they declared the coronavirus outbreak from China a public health emergency of international concern.
T21 2417-2575 Sentence denotes Further, there are lots of concerns and debates all over the world, indicating a need for more understanding of China’s systems in responding to the outbreak.
T22 2576-2813 Sentence denotes Therefore, based on our firsthand experience of working with few of the COVID-19 cases, the purpose of this article is to have a brief report of current development, challenges, and future directions of the coronavirus outbreak in Wuhan.
T23 2815-2844 Sentence denotes China’s progressive responses
T24 2845-2982 Sentence denotes It is recognized by the international community that China has made remarkable progress in responding effectively to the outbreak [1, 2].
T25 2983-3180 Sentence denotes What made China address the epidemic faster is its ability to finance and mobilize resources combined with its strong governance structure, efficient execution, and solidarity of the whole society.
T26 3181-3371 Sentence denotes It just took 1 month for China to recognize the existence of a novel coronavirus after the first case was reported, followed with a series mandatory actions in both Wuhan and all over China.
T27 3372-3421 Sentence denotes In contrast, it took more than 4 months for SARS.
T28 3422-3679 Sentence denotes On December 31, 2019, delegates of the Chinese Center for Disease Control and Prevention (CDC) went to Wuhan for field investigations, and the sample of new virus was isolated and further identified as a pathogen of unexplained pneumonia on January 6, 2020.
T29 3680-3755 Sentence denotes The genome-wide sequence of the virus was decoded in the next few days [3].
T30 3756-3935 Sentence denotes Population mobility to other cities from Wuhan was restricted on January 23, 2020, and all the inhabitants have been affected to either go out or come back to the city ever since.
T31 3936-4104 Sentence denotes Vehicle transportations in Wuhan such as city buses and subways were banned and outbound transportations have been canceled (airlines, trains, and long-distance buses).
T32 4105-4240 Sentence denotes In many places, the Chinese Lunar New Year Festival celebration and other gatherings were cancelled to reduce population concentration.
T33 4241-4378 Sentence denotes Besides, Wuhan not only imposed a ban on overseas travels for tour purposes, but also suspended selling flight tickets and hotel-booking.
T34 4379-4760 Sentence denotes After recognizing it as an emergency epidemic on January 22, 2020, strong measures have been adopted immediately by Wuhan local authorities to characterize and control the epidemic, including isolation of suspected cases for treatment, close monitoring of contacts, epidemiological and clinical data collection from patients, and development of diagnostic and treatment procedures.
T35 4761-4851 Sentence denotes More and more hospitals have been designated by the government to treat infected patients.
T36 4852-5057 Sentence denotes Thousands of people have been quarantined in the new built hospitals such as Huoshenshan Hospital, Leishenshan Hospital, and Fangcang Hospital to provide care for the confirmed infection patients in Wuhan.
T37 5058-5149 Sentence denotes In the meantime, patients with different severity are being treated in different hospitals.
T38 5150-5260 Sentence denotes Thousands of medical professionals nationwide came to Wuhan and other cities in Hubei Province for assistance.
T39 5261-5424 Sentence denotes Many kinds of guidelines have been developed, and useful information about risk factors and preventive measures are recommended to the public by various means [4].
T40 5425-5519 Sentence denotes It is found that the COVID-19 can be transmitted through droplets, contact, aerosol, etc. [5].
T41 5520-5605 Sentence denotes A person will not be infected if he washes his hands before touching the conjunctiva.
T42 5606-5728 Sentence denotes Accordingly, measures such as washing hands, wearing masks and goggles are very effective to prevent potential infections.
T43 5729-5793 Sentence denotes Further, Wuhan has implemented closed management of communities.
T44 5794-5901 Sentence denotes Inhabitants are not allowed to go out of their communities and they are very supportive to this regulation.
T45 5902-6081 Sentence denotes COVID-19 detection kits have been developed and the test results can be generated within 6 h, which is helpful for early diagnosis, treatment and judgment of the treatment effect.
T46 6082-6259 Sentence denotes Although the number of patients with COVID-19 infections is large in Wuhan, the fatality rate is much lower (3.37%, by February 19, 2020) compared with that of SARS (11%, 2003).
T47 6260-6363 Sentence denotes By February 19, 2020, 4895 people have been recovered after treatments and most of them are mild cases.
T48 6365-6375 Sentence denotes Challenges
T49 6376-6480 Sentence denotes It is the first time for the COVID-19 to infect humans and can be transmitted from person to person [6].
T50 6481-6538 Sentence denotes The incubation period can be 2 weeks [7] and even longer.
T51 6539-6726 Sentence denotes Besides, the virus can spread during the incubation period or recessive infection, which makes it difficult to identify those suspected cases without clinical symptoms for prompt control.
T52 6727-6840 Sentence denotes By far, the numbers of new infections and deaths have already exceeded the equivalent numbers of cases with SARS.
T53 6841-6983 Sentence denotes If the situation cannot be fully controlled in Wuhan and Hubei province, the situation may deteriorate in other places of China and the world.
T54 6984-7128 Sentence denotes The government of all levels have been taking strong leadership to combat the outbreak and in recent days there is a decline trend of new cases.
T55 7129-7192 Sentence denotes However, some challenges still remain and need to be addressed:
T56 7193-7366 Sentence denotes The large number of confirmed and suspected cases in Wuhan make people staying with them in high risk of getting infected because of the contagiousness of the new virus [8].
T57 7367-7420 Sentence denotes This is specially the case for medical professionals.
T58 7421-7526 Sentence denotes By February 11, 2020, 1716 medical personnel have been infected and six of them died from all over China.
T59 7527-7664 Sentence denotes Moreover, it is very difficult to identify those people without obvious symptoms, making their families in high risk of getting infected.
T60 7665-7778 Sentence denotes Hospitals have drastically constrained other services to meet the hospitalization needs of the outbreak in Wuhan.
T61 7779-7946 Sentence denotes At the early stage, with more people getting infected and less of them recovered, medical facilities, personnel and protective supplies were increasingly insufficient.
T62 7947-8064 Sentence denotes In many cases, patients cannot be quarantined and treated in time, and many medical staff cannot get fully protected.
T63 8065-8227 Sentence denotes More efficient logistic services are expected to deliver donated materials from both China and the international society to medical professionals and communities.
T64 8228-8363 Sentence denotes However, these are all operating problems and the situation has much alleviated with the strong leadership of government of all levels.
T65 8364-8427 Sentence denotes Effective drugs have yet to be developed to treat the COVID-19.
T66 8428-8959 Sentence denotes Temporarily, Lopinavir/Ritonavir, Nucleoside analogues (e.g. ribavirin), Neuraminidase inhibitors (e.g. oseltamivir), Remdesivir, abidol hydrochloride, RNA synthesis inhibitors (such as Tenofovir disoproxil fumarate, TDF), anti-inflammatory drugs (such as hormones and other molecules), Traditional Chinese Medicine (TCM), such Shu Feng Jie Du Capsules and Lian Hua Qing Wen Capsule, are being used as treatment options for COVID-19, but their efficacy and safety of these drugs are yet to be clinically observed in treatments [9].
T67 8960-9124 Sentence denotes Besides, chloroquine phosphate has recently been recommended by the clinical diagnostics solution (6th edition) released by the National Health Commission of China.
T68 9126-9139 Sentence denotes Looking ahead
T69 9140-9326 Sentence denotes Wuhan has the competence and will to manage the outbreak supported by the provincial and central governments, together with the solidarity of whole China and the international community.
T70 9327-9379 Sentence denotes Wuhan has made great contributions to global health.
T71 9380-9473 Sentence denotes Further global cooperation is required in order to win the pandemic war from local to global.
T72 9474-9744 Sentence denotes Scientists all over the world need to understand COVID-19 and discover potentially effective antiviral treatments and vaccines; epidemiologists need to conduct intensive contact investigations; It is important to promote protection knowledge for the general public [10].
T73 9745-9877 Sentence denotes Finally, Wuhan will not cease the restrictions of population mobility and transportation until the situation is fully under control.
T74 9878-9991 Sentence denotes With all people working together, it is undoubtedly the COVID-19 can be treated and the pandemic is controllable.
T75 9992-10160 Sentence denotes However, comprehensive actions from multi-sectoral bodies, both national and international, with supportive attitudes will be important to proceed towards the solution.
T76 10162-10175 Sentence denotes Abbreviations
T77 10176-10215 Sentence denotes 2019-nCoV or COVID-19 Novel coronavirus
T78 10216-10261 Sentence denotes CDC Center for Disease Control and Prevention
T79 10262-10299 Sentence denotes MERS Middle East respiratory syndrome
T80 10300-10339 Sentence denotes SARS Severe Acute Respiratory Syndromes
T81 10340-10372 Sentence denotes TCM Traditional Chinese Medicine
T82 10373-10406 Sentence denotes TDF Tenofovir Disoproxil Fumarate
T83 10407-10436 Sentence denotes WHO World Health Organization
T84 10438-10454 Sentence denotes Acknowledgements
T85 10455-10571 Sentence denotes We would like to thank the editorial office of the GHRP journal for facilitating the review and publication process.
T86 10572-10665 Sentence denotes Special thanks to Dr. Hao Li for his insightful comments and support in editing the language.
T87 10667-10689 Sentence denotes Authors’ contributions
T88 10690-10718 Sentence denotes Zhu HB wrote the manuscript.
T89 10719-10794 Sentence denotes Wei L and Niu P provided advice in the design and comments for improvement.
T90 10795-10846 Sentence denotes The authors read and approved the final manuscript.
T91 10848-10855 Sentence denotes Funding
T92 10856-10871 Sentence denotes Not applicable.
T93 10873-10907 Sentence denotes Availability of data and materials
T94 10908-10923 Sentence denotes Not applicable.
T95 10925-10967 Sentence denotes Ethics approval and consent to participate
T96 10968-10983 Sentence denotes Not applicable.
T97 10985-11008 Sentence denotes Consent for publication
T98 11009-11024 Sentence denotes Not applicable.
T99 11026-11045 Sentence denotes Competing interests
T100 11046-11104 Sentence denotes The authors declare that they have no competing interests.

2_test

Id Subject Object Predicate Lexical cue
32226823-32020836-45092535 3752-3753 32020836 denotes 3