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PMC:7049657 / 874-2224 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
43 1186-1189 Gene denotes bat Gene:570
44 15-26 Species denotes Coronavirus Tax:11118
45 35-48 Species denotes Coronaviridae Tax:11118
46 94-107 Species denotes coronaviruses Tax:11118
47 215-226 Species denotes Coronavirus Tax:11118
48 242-253 Species denotes coronavirus Tax:11118
49 263-290 Species denotes Infectious Bronchitis virus Tax:11120
50 300-308 Species denotes Chickens Tax:9031
51 433-441 Species denotes chickens Tax:9031
52 594-604 Species denotes SARS-COV-2 Tax:2697049
53 654-662 Species denotes patients Tax:9606
54 1190-1209 Species denotes enteric coronavirus Tax:28293
55 292-295 Species denotes IBV Tax:11120
56 361-364 Species denotes IBV Tax:11120
57 443-446 Species denotes IBV Tax:11120
58 763-766 Species denotes IBV Tax:11120
59 938-941 Species denotes IBV Tax:11120
60 1042-1045 Species denotes IBV Tax:11120
61 1126-1129 Species denotes IBV Tax:11120
62 465-498 Disease denotes upper respiratory tract infection MESH:D012141
63 568-577 Disease denotes nephritis MESH:D009393
64 1264-1273 Disease denotes diarrhoea MESH:D003967
65 1278-1287 Disease denotes mortality MESH:D003643

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T175 15-26 NCBITaxon:11118 denotes Coronavirus
T174 35-48 NCBITaxon:11118 denotes Coronaviridae
T173 80-87 NCBITaxon:10239 denotes viruses
T172 94-107 NCBITaxon:11118 denotes coronaviruses
T171 120-126 NCBITaxon:33208 denotes animal
T170 165-177 NCBITaxon:7742 denotes veterinarian
T169 215-226 NCBITaxon:11118 denotes Coronavirus
T168 242-253 NCBITaxon:11118 denotes coronavirus
T167 263-284 NCBITaxon:11120 denotes Infectious Bronchitis
T166 285-290 NCBITaxon:10376 denotes virus
T165 292-295 NCBITaxon:10376 denotes IBV
T164 300-308 NCBITaxon:9031 denotes Chickens
T163 330-337 SO:0000704 denotes genetic
T162 361-364 NCBITaxon:10376 denotes IBV
T161 370-386 NCBITaxon:155919 denotes Gammacoronavirus
T160 433-441 NCBITaxon:9031 denotes chickens
T159 443-446 NCBITaxon:10376 denotes IBV
T158 465-488 UBERON:0001557 denotes upper respiratory tract
T157 521-533 GO:0000003;UBERON:0001555 denotes reproductive
T156 534-539 UBERON:0001555 denotes tract
T155 594-604 SP_7 denotes SARS-COV-2
T154 623-628 UBERON:0002113 denotes renal
T153 746-753 SO:0000704 denotes genetic
T152 763-766 NCBITaxon:10376 denotes IBV
T151 938-941 NCBITaxon:10376 denotes IBV
T150 1003-1008 NCBITaxon:10239 denotes viral
T149 1009-1015 SO:0001026 denotes genome
T148 1042-1045 NCBITaxon:10376 denotes IBV
T147 1126-1129 NCBITaxon:10376 denotes IBV
T146 1166-1178 NCBITaxon:11118 denotes Coronoavirus
T145 1186-1189 SP_2 denotes bat
T144 1198-1209 NCBITaxon:11118 denotes coronavirus
T143 1327-1336 NCBITaxon:33208 denotes livestock

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 465-488 Body_part denotes upper respiratory tract http://purl.org/sig/ont/fma/fma45661
T2 1009-1015 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 465-488 Body_part denotes upper respiratory tract http://purl.obolibrary.org/obo/UBERON_0001557
T2 471-488 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T6 263-273 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T7 274-284 Disease denotes Bronchitis http://purl.obolibrary.org/obo/MONDO_0003781
T8 471-498 Disease denotes respiratory tract infection http://purl.obolibrary.org/obo/MONDO_0024355
T9 489-498 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 568-577 Disease denotes nephritis http://purl.obolibrary.org/obo/MONDO_0001166
T11 594-598 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T12 1264-1273 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T10 80-87 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T11 120-126 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animal
T12 163-164 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 213-214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 240-241 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 285-290 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T16 300-308 http://purl.obolibrary.org/obo/NCBITaxon_9031 denotes Chickens
T17 368-369 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 402-403 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 433-441 http://purl.obolibrary.org/obo/NCBITaxon_9031 denotes chickens
T20 684-685 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T21 910-913 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T22 963-964 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T23 1074-1083 http://www.ebi.ac.uk/efo/EFO_0000876 denotes extremely
T24 1186-1189 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T25 1293-1296 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 274-284 Phenotype denotes Bronchitis http://purl.obolibrary.org/obo/HP_0012387
T3 465-498 Phenotype denotes upper respiratory tract infection http://purl.obolibrary.org/obo/HP_0002788
T4 568-577 Phenotype denotes nephritis http://purl.obolibrary.org/obo/HP_0000123
T5 1264-1273 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T7 0-88 Sentence denotes Members of the Coronavirus family (Coronaviridae) are quintessential One Health viruses.
T8 89-142 Sentence denotes Many coronaviruses are serious animal health threats.
T9 143-309 Sentence denotes Dr. Oskar Seifried, a veterinarian, provided the first description of a Coronavirus in 1931 [3]; a coronavirus known as Infectious Bronchitis virus (IBV) of Chickens.
T10 310-442 Sentence denotes Today, based on the genetic analysis, we recognise IBV as a Gammacoronavirus which produces a highly contagious disease in chickens.
T11 443-582 Sentence denotes IBV produces not only upper respiratory tract infection, but also affects the reproductive tract, and some strains can cause nephritis [4].
T12 583-663 Sentence denotes Curiously, SARS-COV-2 is also producing renal problems in severely ill patients.
T13 664-878 Sentence denotes It is relevant from a One Health perspective to note that different serotypes and genetic types of IBV are present worldwide and that there seems to be little, if any cross-protection from one serotype to the next.
T14 879-1149 Sentence denotes Also, the veterinary community has noted that new types of IBV continue to arise as a result of recombination events in the viral genome and from mutation, making IBV challenging to identify and extremely difficult to control, even though several IBV vaccines exist [5].
T15 1150-1350 Sentence denotes Another serious Coronoavirus is the bat enteric coronavirus HKU2, identified in China, which causes severe piglet diarrhoea and mortality, and has led to serious impacts to the livestock industry [6].