PMC:7048229 / 171-1312
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T1 | 195-212 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
| T2 | 508-518 | Body_part | denotes | intestines | http://purl.org/sig/ont/fma/fma7199 |
| T3 | 594-603 | Body_part | denotes | intestine | http://purl.org/sig/ont/fma/fma7199 |
| T4 | 770-775 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 195-212 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T2 | 508-518 | Body_part | denotes | intestines | http://purl.obolibrary.org/obo/UBERON_0000160 |
| T3 | 582-588 | Body_part | denotes | organs | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T4 | 594-603 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
| T5 | 770-775 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T3 | 230-239 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T4 | 528-546 | Disease | denotes | 2019-nCoV infected | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T5 | 859-868 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 27-28 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T2 | 508-518 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestines |
| T3 | 508-518 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestines |
| T4 | 567-572 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T5 | 582-588 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organs |
| T6 | 594-603 | http://purl.obolibrary.org/obo/UBERON_0000160 | denotes | intestine |
| T7 | 594-603 | http://www.ebi.ac.uk/efo/EFO_0000834 | denotes | intestine |
| T8 | 615-621 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T9 | 665-666 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T10 | 710-715 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T11 | 770-775 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T12 | 770-775 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T13 | 842-843 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T14 | 964-968 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T15 | 1069-1070 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 230-239 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T6 | 0-8 | Sentence | denotes | ABSTRACT |
| T7 | 9-139 | Sentence | denotes | In December 2019, a novel coronavirus (2019-nCoV) caused an outbreak in Wuhan, China, and soon spread to other parts of the world. |
| T8 | 140-328 | Sentence | denotes | It was believed that 2019-nCoV was transmitted through respiratory tract and then induced pneumonia, thus molecular diagnosis based on oral swabs was used for confirmation of this disease. |
| T9 | 329-417 | Sentence | denotes | Likewise, patient will be released upon two times of negative detection from oral swabs. |
| T10 | 418-519 | Sentence | denotes | However, many coronaviruses can also be transmitted through oral–fecal route by infecting intestines. |
| T11 | 520-622 | Sentence | denotes | Whether 2019-nCoV infected patients also carry virus in other organs like intestine need to be tested. |
| T12 | 623-716 | Sentence | denotes | We conducted investigation on patients in a local hospital who were infected with this virus. |
| T13 | 717-939 | Sentence | denotes | We found the presence of 2019-nCoV in anal swabs and blood as well, and more anal swab positives than oral swab positives in a later stage of infection, suggesting shedding and thereby transmitted through oral–fecal route. |
| T14 | 940-1048 | Sentence | denotes | We also showed serology test can improve detection positive rate thus should be used in future epidemiology. |
| T15 | 1049-1141 | Sentence | denotes | Our report provides a cautionary warning that 2019-nCoV may be shed through multiple routes. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 17 | 29-46 | Species | denotes | novel coronavirus | Tax:2697049 |
| 18 | 48-57 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 19 | 161-170 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 20 | 339-346 | Species | denotes | patient | Tax:9606 |
| 21 | 432-445 | Species | denotes | coronaviruses | Tax:11118 |
| 22 | 547-555 | Species | denotes | patients | Tax:9606 |
| 23 | 653-661 | Species | denotes | patients | Tax:9606 |
| 24 | 742-751 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 25 | 1095-1104 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 26 | 230-239 | Disease | denotes | pneumonia | MESH:D011014 |
| 27 | 528-546 | Disease | denotes | 2019-nCoV infected | MESH:C000657245 |
| 28 | 691-699 | Disease | denotes | infected | MESH:D007239 |
| 29 | 859-868 | Disease | denotes | infection | MESH:D007239 |