PMC:7048229 / 1314-3283
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T5 | 964-970 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T6 | 1242-1245 | Body_part | denotes | IgM | http://purl.org/sig/ont/fma/fma62873 |
| T7 | 1250-1253 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
| T8 | 1308-1315 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T9 | 1445-1453 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T10 | 1562-1579 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T6 | 1562-1579 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T6 | 153-161 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T7 | 174-207 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T8 | 221-225 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T9 | 263-267 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T10 | 682-691 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T11 | 741-756 | Disease | denotes | viral pneumonia | http://purl.obolibrary.org/obo/MONDO_0006012 |
| T12 | 747-756 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T13 | 911-915 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T14 | 983-991 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T15 | 1516-1524 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T16 | 1544-1553 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 132-133 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T17 | 134-139 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T18 | 535-540 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T19 | 541-544 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T20 | 821-826 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T21 | 863-875 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T22 | 899-904 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T23 | 924-929 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T24 | 1057-1062 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T25 | 1278-1279 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T26 | 1317-1319 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
| T27 | 1389-1391 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
| T28 | 1753-1757 | http://purl.obolibrary.org/obo/CLO_0001568 | denotes | a 24 |
| T29 | 1877-1878 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T30 | 1963-1968 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T3 | 1308-1315 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T4 | 1317-1319 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
| T7 | 1389-1391 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
| T10 | 1638-1645 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T2 | 625-630 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T3 | 632-639 | Phenotype | denotes | malaise | http://purl.obolibrary.org/obo/HP_0012378 |
| T4 | 641-660 | Phenotype | denotes | shortness of breath | http://purl.obolibrary.org/obo/HP_0002098 |
| T5 | 682-691 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T6 | 747-756 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T7 | 1544-1553 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32065057-29500691-27758167 | 1349-1350 | 29500691 | denotes | 6 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T16 | 0-12 | Sentence | denotes | Introduction |
| T17 | 13-131 | Sentence | denotes | Coronaviruses (CoVs) belong to the subfamily Orthocoronavirinae in the family Coronaviridae and the order Nidovirales. |
| T18 | 132-244 | Sentence | denotes | A human coronavirus (SARS-CoV) caused the severe acute respiratory syndrome coronavirus (SARS) outbreak in 2003. |
| T19 | 245-373 | Sentence | denotes | Most recently, an SARS-related CoV was implicated as the etiological agent responsible for the outbreak in Wuhan, central China. |
| T20 | 374-530 | Sentence | denotes | This outbreak is estimated to have started on 12th December 2019 and 17,332 laboratory confirmed cases with 361 deaths as of 3rd February 2020 in China [1]. |
| T21 | 531-603 | Sentence | denotes | The virus has spread to 23 other countries by travellers from Wuhan [1]. |
| T22 | 604-698 | Sentence | denotes | Typical symptoms are fever, malaise, shortness of breath and in severe cases, pneumonia [2–4]. |
| T23 | 699-757 | Sentence | denotes | The disease was first called unidentified viral pneumonia. |
| T24 | 758-877 | Sentence | denotes | We quickly identified the etiological agent, termed 2019-nCoV (virus name designated by the World Health Organization). |
| T25 | 878-996 | Sentence | denotes | The newly identified virus is an SARS-related virus (SARSr-CoV) but shares only 74.5% genome identity to SARS-CoV [2]. |
| T26 | 997-1063 | Sentence | denotes | We developed molecular detection tools based on viral spike genes. |
| T27 | 1064-1214 | Sentence | denotes | Our previous studies indicate that qPCR method can be used for the detection of 2019-nCoV in oral swabs or in bronchoalveolar lavage fluid (BALF) [5]. |
| T28 | 1215-1392 | Sentence | denotes | Additionally, we developed IgM and IgG detection methods using a cross-reactive nucleocapsid protein (NP) from another SARSr-CoV Rp3 [6], which is 92% identical to 2019-nCoV NP. |
| T29 | 1393-1510 | Sentence | denotes | Using these serological tools, we demonstrate viral antibody titres increase in patients infected with 2019-nCoV [5]. |
| T30 | 1511-1604 | Sentence | denotes | Like SARS-CoV, 2019-nCoV induced pneumonia through respiratory tract by clinical observation. |
| T31 | 1605-1705 | Sentence | denotes | Therefore, the presence of viral antigen in oral swabs was used as detection standard for 2019-nCoV. |
| T32 | 1706-1826 | Sentence | denotes | Similarly, two times of oral swabs negative in a 24-h interval was considered as viral clearance by patients officially. |
| T33 | 1827-1969 | Sentence | denotes | Here we launched an investigation of 2019-nCoV in a Wuhan hospital, aiming to investigate the other possible transmission route of this virus. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 44 | 13-26 | Species | denotes | Coronaviruses | Tax:11118 |
| 45 | 28-32 | Species | denotes | CoVs | Tax:11118 |
| 46 | 91-104 | Species | denotes | Coronaviridae | Tax:11118 |
| 47 | 134-157 | Species | denotes | human coronavirus (SARS | Tax:694009 |
| 48 | 158-161 | Species | denotes | CoV | Tax:11118 |
| 49 | 174-219 | Species | denotes | severe acute respiratory syndrome coronavirus | Tax:694009 |
| 50 | 263-279 | Species | denotes | SARS-related CoV | Tax:694009 |
| 51 | 221-225 | Species | denotes | SARS | Tax:694009 |
| 52 | 486-492 | Disease | denotes | deaths | MESH:D003643 |
| 53 | 625-630 | Disease | denotes | fever | MESH:D005334 |
| 54 | 632-639 | Disease | denotes | malaise | MESH:D005221 |
| 55 | 641-660 | Disease | denotes | shortness of breath | MESH:D004417 |
| 56 | 682-691 | Disease | denotes | pneumonia | MESH:D011014 |
| 57 | 741-756 | Disease | denotes | viral pneumonia | |
| 69 | 1344-1347 | Gene | denotes | Rp3 | Gene:6103 |
| 70 | 810-819 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 71 | 911-929 | Species | denotes | SARS-related virus | Tax:694009 |
| 72 | 931-940 | Species | denotes | SARSr-CoV | Tax:694009 |
| 73 | 983-991 | Species | denotes | SARS-CoV | Tax:694009 |
| 74 | 1144-1153 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 75 | 1334-1343 | Species | denotes | SARSr-CoV | Tax:694009 |
| 76 | 1379-1388 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 77 | 1473-1481 | Species | denotes | patients | Tax:9606 |
| 78 | 1496-1505 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 79 | 1482-1490 | Disease | denotes | infected | MESH:D007239 |
| 86 | 1516-1524 | Species | denotes | SARS-CoV | Tax:694009 |
| 87 | 1526-1535 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 88 | 1695-1704 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 89 | 1806-1814 | Species | denotes | patients | Tax:9606 |
| 90 | 1864-1873 | Species | denotes | 2019-nCoV | Tax:2697049 |
| 91 | 1544-1553 | Disease | denotes | pneumonia | MESH:D011014 |
MyTest
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32065057-29500691-27758167 | 1349-1350 | 29500691 | denotes | 6 |