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PMC:7048180 / 4866-5942 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T18 55-67 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T19 77-84 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T20 364-371 Body_part denotes Protein http://purl.org/sig/ont/fma/fma67257

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 302-310 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T32 408-416 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 500-508 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 578-586 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 595-603 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T36 685-693 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 11-12 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 159-165 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T35 251-252 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T36 1008-1009 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 1010-1013 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1:1

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T25 55-67 Chemical denotes glycoprotein http://purl.obolibrary.org/obo/CHEBI_17089
T26 77-84 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T27 151-155 Chemical denotes MEGA http://purl.obolibrary.org/obo/CHEBI_6617
T28 364-371 Chemical denotes Protein http://purl.obolibrary.org/obo/CHEBI_16541

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T32 0-101 Sentence denotes Figure 1. (a) Phylogenetic analysis of 2019-nCoV spike glycoprotein from its protein BLAST sequences.
T33 102-970 Sentence denotes The neighbour-joining tree was constructed using MEGA X, tested by bootstrap method of 2000 replicates, and edited by the online tool of iTOL (v5). (b) The simulated model of 2019-nCoV RBD binding to SARS-CoV-RBD-specific antibodies (m396, 80R, and F26G19). (c) Protein sequence alignment of 2019-nCoV and SARS-CoV RBD, showing the predominant residues that contribute to interactions with ACE2 or SARS-CoV-specific antibodies. (d) The comparison of the complex structures of SARS-CoV-RBD and SARS-CoV-RBD-specific antibodies (shown in the first row) and models of 2019-nCoV-RBD and SARS-CoV-RBD-specific antibodies (shown in the second row). (e) Binding of monoclonal antibodies to 2019-nCoV RBD determined by ELISA. (f) Binding profiles of 2019-nCoV RBD to ACE2 and antibodies, and (g) competition of CR3022 and ACE2 with 2019-nCoV RBD measured by BLI in OctetRED96.
T34 971-1076 Sentence denotes Binding kinetics was evaluated using a 1:1 Langmuir binding model by ForteBio Data Analysis 7.0 software.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
97 492-496 Gene denotes ACE2 Gene:59272
98 861-865 Gene denotes ACE2 Gene:59272
99 916-920 Gene denotes ACE2 Gene:59272
100 39-48 Species denotes 2019-nCoV Tax:2697049
101 277-286 Species denotes 2019-nCoV Tax:2697049
102 302-310 Species denotes SARS-CoV Tax:694009
103 394-403 Species denotes 2019-nCoV Tax:2697049
104 408-416 Species denotes SARS-CoV Tax:694009
105 578-586 Species denotes SARS-CoV Tax:694009
106 595-603 Species denotes SARS-CoV Tax:694009
107 667-676 Species denotes 2019-nCoV Tax:2697049
108 685-693 Species denotes SARS-CoV Tax:694009
109 785-794 Species denotes 2019-nCoV Tax:2697049
110 844-853 Species denotes 2019-nCoV Tax:2697049
111 926-935 Species denotes 2019-nCoV Tax:2697049
112 500-508 Species denotes SARS-CoV Tax:694009
113 905-911 Chemical denotes CR3022