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PMC:7047374 / 9193-13757 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
197 25-31 Species denotes people Tax:9606
199 79-89 Species denotes SARS-CoV-2 Tax:2697049
201 798-808 Species denotes SARS-CoV-2 Tax:2697049
205 2286-2292 Species denotes people Tax:9606
206 2430-2436 Species denotes people Tax:9606
207 2219-2224 Disease denotes death MESH:D003643
209 2526-2532 Species denotes people Tax:9606

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T59 79-87 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T60 79-83 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T61 798-806 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T62 798-802 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T63 2073-2075 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T64 2113-2115 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T65 2136-2140 Disease denotes P′AP http://purl.obolibrary.org/obo/MONDO_0001437|http://purl.obolibrary.org/obo/MONDO_0012579
T67 2156-2160 Disease denotes P′AP http://purl.obolibrary.org/obo/MONDO_0001437|http://purl.obolibrary.org/obo/MONDO_0012579

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T96 133-134 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 231-235 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T98 1350-1351 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T99 1446-1447 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T100 1699-1702 http://www.ebi.ac.uk/efo/EFO_0000265 denotes d{A
T101 1789-1790 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T102 1866-1867 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T103 1941-1942 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T104 2028-2030 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T105 2050-2052 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T106 2138-2140 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T107 2158-2160 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T108 2255-2256 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T109 2399-2401 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T110 2537-2544 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T111 3011-3012 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 3139-3140 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T113 3174-3175 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T114 3261-3263 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T115 3398-3400 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T116 3790-3791 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T117 3821-3822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T118 3834-3835 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T119 3868-3869 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T120 3899-3900 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 3912-3913 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T122 4125-4128 http://www.ebi.ac.uk/efo/EFO_0000265 denotes d{a
T123 4215-4216 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T124 4291-4292 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T125 4351-4352 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T126 4417-4419 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T127 4433-4435 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T128 4455-4457 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP
T129 4543-4545 http://purl.obolibrary.org/obo/CLO_0001547 denotes aP

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T65 935-937 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T66 1316-1320 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T67 1364-1368 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T68 1412-1416 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T69 1460-1464 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T70 1650-1655 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T71 1757-1762 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T72 1831-1836 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T73 1847-1852 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T74 2028-2030 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T77 2050-2052 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T80 2064-2067 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T82 2073-2075 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T83 2091-2094 Chemical denotes PEP http://purl.obolibrary.org/obo/CHEBI_18021|http://purl.obolibrary.org/obo/CHEBI_44897
T85 2113-2115 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T86 2131-2134 Chemical denotes PIP http://purl.obolibrary.org/obo/CHEBI_16500
T87 2138-2140 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T90 2151-2154 Chemical denotes PIP http://purl.obolibrary.org/obo/CHEBI_16500
T91 2158-2160 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T94 3146-3150 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T95 3192-3196 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T96 3248-3252 Chemical denotes EPNP http://purl.obolibrary.org/obo/CHEBI_508
T97 3253-3255 Chemical denotes iP http://purl.obolibrary.org/obo/CHEBI_17660
T98 3282-3285 Chemical denotes PNP http://purl.obolibrary.org/obo/CHEBI_16836
T99 3298-3301 Chemical denotes PNP http://purl.obolibrary.org/obo/CHEBI_16836
T100 3398-3400 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T103 3413-3415 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T104 3432-3434 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T105 4088-4093 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T106 4183-4188 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T107 4256-4261 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T108 4272-4277 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T109 4556-4558 Chemical denotes iP http://purl.obolibrary.org/obo/CHEBI_17660

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T98 0-58 Sentence denotes The simplified reservoir-people transmission network model
T99 59-146 Sentence denotes We assumed that the SARS-CoV-2 might be imported to the seafood market in a short time.
T100 147-202 Sentence denotes Therefore, we added the further assumptions as follows:
T101 203-253 Sentence denotes The transmission network of Bats-Host was ignored.
T102 254-735 Sentence denotes Based on our previous studies on simulating importation [13, 14], we set the initial value of W as following impulse function: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ Importation= impulse\left(n,{t}_0,{t}_i\right) $$\end{document}Importation=impulsent0ti
T103 736-890 Sentence denotes In the function, n, t0 and ti refer to imported volume of the SARS-CoV-2 to the market, start time of the simulation, and the interval of the importation.
T104 891-2163 Sentence denotes Therefore, the BHRP model was simplified as RP model and is shown as follows: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ \left\{\kern0.5em \begin{array}{c}\frac{d{S}_P}{dt}={\varLambda}_P-{m}_P{S}_P-{\beta}_P{S}_P\left({I}_P+\upkappa {A}_P\right)-{\beta}_W{S}_PW\kern11em \\ {}\frac{d{E}_P}{dt}={\beta}_P{S}_P\left({I}_P+\upkappa {A}_P\right)+{\beta}_W{S}_PW-\left(1-{\delta}_P\right){\upomega}_P{E}_P-{\delta}_P{\upomega}_P^{\prime }{E}_P-{m}_P{E}_P\kern0.5em \\ {}\frac{d{I}_P}{dt}=\left(1-{\delta}_P\right){\upomega}_P{E}_P-\left({\gamma}_P+{m}_P\right){I}_P\kern16.5em \\ {}\frac{d{A}_P}{dt}={\delta}_P{\upomega}_P^{\prime }{E}_P-\left({\gamma}_P^{\prime }+{m}_P\right){A}_P\kern18.75em \\ {}\frac{d{R}_P}{dt}={\gamma}_P{I}_P+{\gamma}_P^{\prime }{A}_P-{m}_P{R}_P\kern20em \\ {}\frac{dW}{dt}={\mu}_P{I}_P+{\mu}_P^{\prime }{A}_P-\varepsilon W\kern20.5em \end{array}\right. $$\end{document}dSPdt=ΛP−mPSP−βPSPIP+κAP−βWSPWdEPdt=βPSPIP+κAP+βWSPW−1−δPωPEP−δPωP′EP−mPEPdIPdt=1−δPωPEP−γP+mPIPdAPdt=δPωP′EP−γP′+mPAPdRPdt=γPIP+γP′AP−mPRPdWdt=μPIP+μP′AP−εW
T105 2164-2276 Sentence denotes During the outbreak period, the natural birth rate and death rate in the population was in a relative low level.
T106 2277-2387 Sentence denotes However, people would commonly travel into and out from Wuhan City mainly due to the Chinese New Year holiday.
T107 2388-2511 Sentence denotes Therefore, nP and mP refer to the rate of people traveling into Wuhan City and traveling out from Wuhan City, respectively.
T108 2512-2571 Sentence denotes In the model, people and viruses have different dimensions.
T109 2572-3316 Sentence denotes Based on our previous research [15], we therefore used the following sets to perform the normalization: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ {s}_P=\frac{S_P}{N_P},{e}_P=\frac{E_P}{N_P},{i}_P=\frac{I_P}{N_P}, {a}_P=\frac{A_P}{N_P},{r}_P=\frac{R_P}{N_P},w=\frac{\varepsilon W}{\mu_P{N}_P},\kern0.5em {\mu}_P^{\prime }=c{\mu}_P,\kern0.5em {b}_P={\beta}_P{N}_P,\mathrm{and}\ {b}_W=\frac{\mu_P{\beta}_W{N}_P}{\varepsilon .} $$\end{document}sP=SPNP,eP=EPNP,iP=IPNP,aP=APNP,rP=RPNP,w=εWμPNP,μP′=cμP,bP=βPNP,andbW=μPβWNPε.
T110 3317-3416 Sentence denotes In the normalization, parameter c refers to the relative shedding coefficient of AP compared to IP.
T111 3417-4564 Sentence denotes The normalized RP model is changed as follows: \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$ \left\{\begin{array}{c}\frac{d{s}_P}{dt}={n}_P-{m}_P{s}_P-{b}_P{s}_P\left({i}_P+\upkappa {a}_P\right)-{b}_W{s}_Pw\\ {}\frac{d{e}_P}{dt}={b}_P{s}_P\left({i}_P+\upkappa {a}_P\right)+{b}_W{s}_Pw-\left(1-{\delta}_P\right){\upomega}_P{e}_P-{\delta}_P{\upomega}_P^{\prime }{e}_P-{m}_P{e}_P\\ {}\frac{d{i}_P}{dt}=\left(1-{\delta}_P\right){\upomega}_P{e}_P-\left({\gamma}_P+{m}_P\right){i}_P\\ {}\frac{d{a}_P}{dt}={\delta}_P{\upomega}_P^{\prime }{e}_P-\left({\gamma}_P^{\prime }+{m}_P\right){a}_P\kern26.5em \\ {}\frac{d{r}_P}{dt}={\gamma}_P{i}_P+{\gamma}_P^{\prime }{a}_P-{m}_P{r}_P\\ {}\frac{dw}{dt}=\varepsilon \left({i}_P+c{a}_P-w\right)\kern28.2em \end{array}\right. $$\end{document}dsPdt=nP−mPsP−bPsPiP+κaP−bWsPwdePdt=bPsPiP+κaP+bWsPw−1−δPωPeP−δPωP′eP−mPePdiPdt=1−δPωPeP−γP+mPiPdaPdt=δPωP′eP−γP′+mPaPdrPdt=γPiP+γP′aP−mPrPdwdt=εiP+caP−w

2_test

Id Subject Object Predicate Lexical cue
32111262-25467086-47462507 311-313 25467086 denotes 13
32111262-31415559-47462508 315-317 31415559 denotes 14
32111262-24736407-47462509 2604-2606 24736407 denotes 15
T99805 311-313 25467086 denotes 13
T53159 315-317 31415559 denotes 14
T22671 2604-2606 24736407 denotes 15