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PMC:7047374 / 4926-8006 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
78 551-559 Disease denotes infected MESH:D007239
79 613-618 Disease denotes death MESH:D003643
80 801-810 Disease denotes infection MESH:D007239
81 828-830 Disease denotes ωB
82 864-873 Disease denotes infection MESH:D007239
83 910-918 Disease denotes infected MESH:D007239
91 1522-1525 Gene denotes βBH Gene:8846
92 1096-1104 Disease denotes infected MESH:D007239
93 1160-1165 Disease denotes death MESH:D003643
94 1317-1326 Disease denotes infection MESH:D007239
95 1344-1346 Disease denotes ωH
96 1381-1390 Disease denotes infection MESH:D007239
97 1427-1435 Disease denotes infected MESH:D007239
107 2005-2007 Gene denotes μP Gene:100129193
108 1552-1562 Species denotes SARS-CoV-2 Tax:2697049
109 1718-1728 Species denotes SARS-CoV-2 Tax:2697049
110 1784-1794 Species denotes SARS-CoV-2 Tax:2697049
111 1918-1924 Species denotes people Tax:9606
112 1951-1957 Species denotes people Tax:9606
113 1909-1917 Disease denotes infected MESH:D007239
114 1942-1950 Disease denotes infected MESH:D007239
115 2146-2148 Disease denotes εW
134 2194-2200 Species denotes people Tax:9606
135 2250-2256 Species denotes people Tax:9606
136 2271-2277 Species denotes people Tax:9606
137 2305-2311 Species denotes people Tax:9606
138 2340-2346 Species denotes people Tax:9606
139 2365-2371 Species denotes people Tax:9606
140 2407-2413 Species denotes people Tax:9606
141 2448-2454 Species denotes people Tax:9606
142 2555-2561 Species denotes people Tax:9606
143 2606-2611 Species denotes human Tax:9606
144 2296-2304 Disease denotes infected MESH:D007239
145 2331-2339 Disease denotes infected MESH:D007239
146 2401-2406 Disease denotes death MESH:D003643
147 2434-2439 Disease denotes death MESH:D003643
148 2612-2621 Disease denotes infection MESH:D007239
149 2648-2651 Disease denotes ω’P MESH:C000656865
150 2750-2759 Disease denotes infection MESH:D007239
151 2794-2802 Disease denotes infected MESH:D007239
153 3047-3053 Species denotes People Tax:9606
156 308-314 Species denotes People Tax:9606
157 358-367 Disease denotes infection MESH:D007239

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 495-507 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T2 1038-1050 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577
T3 2121-2132 Body_part denotes compartment http://purl.org/sig/ont/fma/fma76577
T4 2224-2236 Body_part denotes compartments http://purl.org/sig/ont/fma/fma76577

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T29 358-367 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T30 546-548 Disease denotes EB http://purl.obolibrary.org/obo/MONDO_0006541
T31 589-591 Disease denotes RB http://purl.obolibrary.org/obo/MONDO_0008380
T32 691-693 Disease denotes NB http://purl.obolibrary.org/obo/MONDO_0005072
T33 734-736 Disease denotes NB http://purl.obolibrary.org/obo/MONDO_0005072
T34 801-810 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T35 839-849 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T36 864-873 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 1317-1326 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T38 1355-1365 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T39 1381-1390 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T40 1523-1525 Disease denotes BH http://purl.obolibrary.org/obo/MONDO_0010873
T41 1552-1560 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T42 1552-1556 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T43 1718-1726 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T44 1718-1722 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T45 1784-1792 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T46 1784-1788 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T47 2279-2281 Disease denotes EP http://purl.obolibrary.org/obo/MONDO_0002754
T48 2612-2621 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T49 2657-2667 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T50 2750-2759 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T45 104-109 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 132-136 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T47 196-203 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T48 301-306 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T49 467-471 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T50 521-525 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T51 540-544 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T52 546-548 http://purl.obolibrary.org/obo/CLO_0002867 denotes EB
T53 560-564 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T54 583-587 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T55 627-631 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T56 655-657 http://purl.obolibrary.org/obo/PR_000010213 denotes mB
T57 723-727 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T58 766-770 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T59 797-800 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T60 829-830 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T61 860-863 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T62 892-893 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T63 997-998 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T64 1136-1138 http://purl.obolibrary.org/obo/CLO_0008812 denotes RH
T65 1203-1205 http://purl.obolibrary.org/obo/CLO_0007706 denotes mH
T66 1688-1689 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T67 1975-1980 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T68 2057-2058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T69 2080-2085 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T70 2136-2137 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T71 2183-2188 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T72 2348-2350 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T73 2471-2473 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T74 2509-2511 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T75 2514-2516 http://purl.obolibrary.org/obo/CLO_0008192 denotes NP
T76 2523-2525 http://purl.obolibrary.org/obo/CLO_0008192 denotes NP
T77 2606-2611 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T78 2685-2687 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T79 2958-2960 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T80 3026-3030 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 546-548 Chemical denotes EB http://purl.obolibrary.org/obo/CHEBI_53197
T8 1071-1073 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651
T10 1112-1114 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T11 1136-1138 Chemical denotes RH http://purl.obolibrary.org/obo/CHEBI_18310
T12 1239-1241 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T14 1248-1250 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T16 1416-1418 Chemical denotes SH http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651
T18 1475-1477 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T19 1750-1752 Chemical denotes IH http://purl.obolibrary.org/obo/CHEBI_73520
T20 1753-1755 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T22 1833-1835 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T24 1842-1844 Chemical denotes NH http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424
T26 2258-2260 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T27 2279-2281 Chemical denotes EP http://purl.obolibrary.org/obo/CHEBI_73508
T28 2313-2315 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T29 2348-2350 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T32 2373-2375 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T33 2514-2516 Chemical denotes NP http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425
T36 2523-2525 Chemical denotes NP http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425
T39 2678-2680 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T40 2685-2687 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T43 2783-2785 Chemical denotes SP http://purl.obolibrary.org/obo/CHEBI_74820
T44 2841-2843 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076
T45 2958-2960 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T48 2981-2983 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T42 0-83 Sentence denotes The BHRP transmission network model was posted to bioRxiv on 19 January, 2020 [12].
T43 84-205 Sentence denotes We assumed that the virus transmitted among the bats, and then transmitted to unknown hosts (probably some wild animals).
T44 206-307 Sentence denotes The hosts were hunted and sent to the seafood market which was defined as the reservoir of the virus.
T45 308-377 Sentence denotes People exposed to the market got the risks of the infection (Fig. 1).
T46 378-462 Sentence denotes The BHRP transmission network model was based on the following assumptions or facts:
T47 463-593 Sentence denotes The bats were divided into four compartments: susceptible bats (SB), exposed bats (EB), infected bats (IB), and removed bats (RB).
T48 594-658 Sentence denotes The birth rate and death rate of bats were defined as nB and mB.
T49 659-771 Sentence denotes In this model, we set ɅB = nB × NB as the number of the newborn bats where NB refer to the total number of bats.
T50 772-894 Sentence denotes The incubation period of bat infection was defined as 1/ωB and the infectious period of bat infection was defined as 1/γB.
T51 895-999 Sentence denotes The SB will be infected through sufficient contact with IB, and the transmission rate was defined as βB.
T52 1000-1140 Sentence denotes The hosts were also divided into four compartments: susceptible hosts (SH), exposed hosts (EH), infected hosts (IH), and removed hosts (RH).
T53 1141-1206 Sentence denotes The birth rate and death rate of hosts were defined as nH and mH.
T54 1207-1286 Sentence denotes In this model, we set ɅH = nH × NH where NH refer to the total number of hosts.
T55 1287-1411 Sentence denotes The incubation period of host infection was defined as 1/ωH and the infectious period of host infection was defined as 1/γH.
T56 1412-1547 Sentence denotes The SH will be infected through sufficient contact with IB and IH, and the transmission rates were defined as βBH and βH, respectively.
T57 1548-1614 Sentence denotes The SARS-CoV-2 in reservoir (the seafood market) was denoted as W.
T58 1615-1875 Sentence denotes We assumed that the retail purchases rate of the hosts in the market was a, and that the prevalence of SARS-CoV-2 in the purchases was IH/NH, therefore, the rate of the SARS-CoV-2 in W imported form the hosts was aWIH/NH where NH was the total number of hosts.
T59 1876-2075 Sentence denotes We also assumed that symptomatic infected people and asymptomatic infected people could export the virus into W with the rate of μP and μ’P, although this assumption might occur in a low probability.
T60 2076-2189 Sentence denotes The virus in W will subsequently leave the W compartment at a rate of εW, where 1/ε is the lifetime of the virus.
T61 2190-2414 Sentence denotes The people were divided into five compartments: susceptible people (SP), exposed people (EP), symptomatic infected people (IP), asymptomatic infected people (AP), and removed people (RP) including recovered and death people.
T62 2415-2481 Sentence denotes The birth rate and death rate of people were defined as nP and mP.
T63 2482-2562 Sentence denotes In this model, we set ɅP = nP × NP where NP refer to the total number of people.
T64 2563-2652 Sentence denotes The incubation period and latent period of human infection was defined as 1/ωP and 1/ω’P.
T65 2653-2718 Sentence denotes The infectious period of IP and AP was defined as 1/γP and 1/γ’P.
T66 2719-2778 Sentence denotes The proportion of asymptomatic infection was defined as δP.
T67 2779-2912 Sentence denotes The SP will be infected through sufficient contact with W and IP, and the transmission rates were defined as βW and βP, respectively.
T68 2913-3001 Sentence denotes We also assumed that the transmissibility of AP was κ times that of IP, where 0 ≤ κ ≤ 1.
T69 3002-3080 Sentence denotes Fig. 1 Flowchart of the Bats-Hosts-Reservoir-People transmission network model