
PMC:7047374 / 4926-8006
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
78 | 551-559 | Disease | denotes | infected | MESH:D007239 |
79 | 613-618 | Disease | denotes | death | MESH:D003643 |
80 | 801-810 | Disease | denotes | infection | MESH:D007239 |
81 | 828-830 | Disease | denotes | ωB | |
82 | 864-873 | Disease | denotes | infection | MESH:D007239 |
83 | 910-918 | Disease | denotes | infected | MESH:D007239 |
91 | 1522-1525 | Gene | denotes | βBH | Gene:8846 |
92 | 1096-1104 | Disease | denotes | infected | MESH:D007239 |
93 | 1160-1165 | Disease | denotes | death | MESH:D003643 |
94 | 1317-1326 | Disease | denotes | infection | MESH:D007239 |
95 | 1344-1346 | Disease | denotes | ωH | |
96 | 1381-1390 | Disease | denotes | infection | MESH:D007239 |
97 | 1427-1435 | Disease | denotes | infected | MESH:D007239 |
107 | 2005-2007 | Gene | denotes | μP | Gene:100129193 |
108 | 1552-1562 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
109 | 1718-1728 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
110 | 1784-1794 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
111 | 1918-1924 | Species | denotes | people | Tax:9606 |
112 | 1951-1957 | Species | denotes | people | Tax:9606 |
113 | 1909-1917 | Disease | denotes | infected | MESH:D007239 |
114 | 1942-1950 | Disease | denotes | infected | MESH:D007239 |
115 | 2146-2148 | Disease | denotes | εW | |
134 | 2194-2200 | Species | denotes | people | Tax:9606 |
135 | 2250-2256 | Species | denotes | people | Tax:9606 |
136 | 2271-2277 | Species | denotes | people | Tax:9606 |
137 | 2305-2311 | Species | denotes | people | Tax:9606 |
138 | 2340-2346 | Species | denotes | people | Tax:9606 |
139 | 2365-2371 | Species | denotes | people | Tax:9606 |
140 | 2407-2413 | Species | denotes | people | Tax:9606 |
141 | 2448-2454 | Species | denotes | people | Tax:9606 |
142 | 2555-2561 | Species | denotes | people | Tax:9606 |
143 | 2606-2611 | Species | denotes | human | Tax:9606 |
144 | 2296-2304 | Disease | denotes | infected | MESH:D007239 |
145 | 2331-2339 | Disease | denotes | infected | MESH:D007239 |
146 | 2401-2406 | Disease | denotes | death | MESH:D003643 |
147 | 2434-2439 | Disease | denotes | death | MESH:D003643 |
148 | 2612-2621 | Disease | denotes | infection | MESH:D007239 |
149 | 2648-2651 | Disease | denotes | ω’P | MESH:C000656865 |
150 | 2750-2759 | Disease | denotes | infection | MESH:D007239 |
151 | 2794-2802 | Disease | denotes | infected | MESH:D007239 |
153 | 3047-3053 | Species | denotes | People | Tax:9606 |
156 | 308-314 | Species | denotes | People | Tax:9606 |
157 | 358-367 | Disease | denotes | infection | MESH:D007239 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 495-507 | Body_part | denotes | compartments | http://purl.org/sig/ont/fma/fma76577 |
T2 | 1038-1050 | Body_part | denotes | compartments | http://purl.org/sig/ont/fma/fma76577 |
T3 | 2121-2132 | Body_part | denotes | compartment | http://purl.org/sig/ont/fma/fma76577 |
T4 | 2224-2236 | Body_part | denotes | compartments | http://purl.org/sig/ont/fma/fma76577 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T29 | 358-367 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T30 | 546-548 | Disease | denotes | EB | http://purl.obolibrary.org/obo/MONDO_0006541 |
T31 | 589-591 | Disease | denotes | RB | http://purl.obolibrary.org/obo/MONDO_0008380 |
T32 | 691-693 | Disease | denotes | NB | http://purl.obolibrary.org/obo/MONDO_0005072 |
T33 | 734-736 | Disease | denotes | NB | http://purl.obolibrary.org/obo/MONDO_0005072 |
T34 | 801-810 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T35 | 839-849 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T36 | 864-873 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T37 | 1317-1326 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T38 | 1355-1365 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T39 | 1381-1390 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T40 | 1523-1525 | Disease | denotes | BH | http://purl.obolibrary.org/obo/MONDO_0010873 |
T41 | 1552-1560 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T42 | 1552-1556 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T43 | 1718-1726 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T44 | 1718-1722 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T45 | 1784-1792 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T46 | 1784-1788 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T47 | 2279-2281 | Disease | denotes | EP | http://purl.obolibrary.org/obo/MONDO_0002754 |
T48 | 2612-2621 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T49 | 2657-2667 | Disease | denotes | infectious | http://purl.obolibrary.org/obo/MONDO_0005550 |
T50 | 2750-2759 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T45 | 104-109 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T46 | 132-136 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T47 | 196-203 | http://purl.obolibrary.org/obo/NCBITaxon_33208 | denotes | animals |
T48 | 301-306 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T49 | 467-471 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T50 | 521-525 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T51 | 540-544 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T52 | 546-548 | http://purl.obolibrary.org/obo/CLO_0002867 | denotes | EB |
T53 | 560-564 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T54 | 583-587 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T55 | 627-631 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T56 | 655-657 | http://purl.obolibrary.org/obo/PR_000010213 | denotes | mB |
T57 | 723-727 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T58 | 766-770 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bats |
T59 | 797-800 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T60 | 829-830 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T61 | 860-863 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T62 | 892-893 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T63 | 997-998 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
T64 | 1136-1138 | http://purl.obolibrary.org/obo/CLO_0008812 | denotes | RH |
T65 | 1203-1205 | http://purl.obolibrary.org/obo/CLO_0007706 | denotes | mH |
T66 | 1688-1689 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T67 | 1975-1980 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T68 | 2057-2058 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T69 | 2080-2085 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T70 | 2136-2137 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T71 | 2183-2188 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T72 | 2348-2350 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
T73 | 2471-2473 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | nP |
T74 | 2509-2511 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | nP |
T75 | 2514-2516 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
T76 | 2523-2525 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | NP |
T77 | 2606-2611 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T78 | 2685-2687 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
T79 | 2958-2960 | http://purl.obolibrary.org/obo/CLO_0001547 | denotes | AP |
T80 | 3026-3030 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | Bats |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T7 | 546-548 | Chemical | denotes | EB | http://purl.obolibrary.org/obo/CHEBI_53197 |
T8 | 1071-1073 | Chemical | denotes | SH | http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651 |
T10 | 1112-1114 | Chemical | denotes | IH | http://purl.obolibrary.org/obo/CHEBI_73520 |
T11 | 1136-1138 | Chemical | denotes | RH | http://purl.obolibrary.org/obo/CHEBI_18310 |
T12 | 1239-1241 | Chemical | denotes | NH | http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424 |
T14 | 1248-1250 | Chemical | denotes | NH | http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424 |
T16 | 1416-1418 | Chemical | denotes | SH | http://purl.obolibrary.org/obo/CHEBI_29312|http://purl.obolibrary.org/obo/CHEBI_73651 |
T18 | 1475-1477 | Chemical | denotes | IH | http://purl.obolibrary.org/obo/CHEBI_73520 |
T19 | 1750-1752 | Chemical | denotes | IH | http://purl.obolibrary.org/obo/CHEBI_73520 |
T20 | 1753-1755 | Chemical | denotes | NH | http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424 |
T22 | 1833-1835 | Chemical | denotes | NH | http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424 |
T24 | 1842-1844 | Chemical | denotes | NH | http://purl.obolibrary.org/obo/CHEBI_29339|http://purl.obolibrary.org/obo/CHEBI_73424 |
T26 | 2258-2260 | Chemical | denotes | SP | http://purl.obolibrary.org/obo/CHEBI_74820 |
T27 | 2279-2281 | Chemical | denotes | EP | http://purl.obolibrary.org/obo/CHEBI_73508 |
T28 | 2313-2315 | Chemical | denotes | IP | http://purl.obolibrary.org/obo/CHEBI_74076 |
T29 | 2348-2350 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
T32 | 2373-2375 | Chemical | denotes | RP | http://purl.obolibrary.org/obo/CHEBI_141419 |
T33 | 2514-2516 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
T36 | 2523-2525 | Chemical | denotes | NP | http://purl.obolibrary.org/obo/CHEBI_50803|http://purl.obolibrary.org/obo/CHEBI_53793|http://purl.obolibrary.org/obo/CHEBI_73425 |
T39 | 2678-2680 | Chemical | denotes | IP | http://purl.obolibrary.org/obo/CHEBI_74076 |
T40 | 2685-2687 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
T43 | 2783-2785 | Chemical | denotes | SP | http://purl.obolibrary.org/obo/CHEBI_74820 |
T44 | 2841-2843 | Chemical | denotes | IP | http://purl.obolibrary.org/obo/CHEBI_74076 |
T45 | 2958-2960 | Chemical | denotes | AP | http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686 |
T48 | 2981-2983 | Chemical | denotes | IP | http://purl.obolibrary.org/obo/CHEBI_74076 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T42 | 0-83 | Sentence | denotes | The BHRP transmission network model was posted to bioRxiv on 19 January, 2020 [12]. |
T43 | 84-205 | Sentence | denotes | We assumed that the virus transmitted among the bats, and then transmitted to unknown hosts (probably some wild animals). |
T44 | 206-307 | Sentence | denotes | The hosts were hunted and sent to the seafood market which was defined as the reservoir of the virus. |
T45 | 308-377 | Sentence | denotes | People exposed to the market got the risks of the infection (Fig. 1). |
T46 | 378-462 | Sentence | denotes | The BHRP transmission network model was based on the following assumptions or facts: |
T47 | 463-593 | Sentence | denotes | The bats were divided into four compartments: susceptible bats (SB), exposed bats (EB), infected bats (IB), and removed bats (RB). |
T48 | 594-658 | Sentence | denotes | The birth rate and death rate of bats were defined as nB and mB. |
T49 | 659-771 | Sentence | denotes | In this model, we set ɅB = nB × NB as the number of the newborn bats where NB refer to the total number of bats. |
T50 | 772-894 | Sentence | denotes | The incubation period of bat infection was defined as 1/ωB and the infectious period of bat infection was defined as 1/γB. |
T51 | 895-999 | Sentence | denotes | The SB will be infected through sufficient contact with IB, and the transmission rate was defined as βB. |
T52 | 1000-1140 | Sentence | denotes | The hosts were also divided into four compartments: susceptible hosts (SH), exposed hosts (EH), infected hosts (IH), and removed hosts (RH). |
T53 | 1141-1206 | Sentence | denotes | The birth rate and death rate of hosts were defined as nH and mH. |
T54 | 1207-1286 | Sentence | denotes | In this model, we set ɅH = nH × NH where NH refer to the total number of hosts. |
T55 | 1287-1411 | Sentence | denotes | The incubation period of host infection was defined as 1/ωH and the infectious period of host infection was defined as 1/γH. |
T56 | 1412-1547 | Sentence | denotes | The SH will be infected through sufficient contact with IB and IH, and the transmission rates were defined as βBH and βH, respectively. |
T57 | 1548-1614 | Sentence | denotes | The SARS-CoV-2 in reservoir (the seafood market) was denoted as W. |
T58 | 1615-1875 | Sentence | denotes | We assumed that the retail purchases rate of the hosts in the market was a, and that the prevalence of SARS-CoV-2 in the purchases was IH/NH, therefore, the rate of the SARS-CoV-2 in W imported form the hosts was aWIH/NH where NH was the total number of hosts. |
T59 | 1876-2075 | Sentence | denotes | We also assumed that symptomatic infected people and asymptomatic infected people could export the virus into W with the rate of μP and μ’P, although this assumption might occur in a low probability. |
T60 | 2076-2189 | Sentence | denotes | The virus in W will subsequently leave the W compartment at a rate of εW, where 1/ε is the lifetime of the virus. |
T61 | 2190-2414 | Sentence | denotes | The people were divided into five compartments: susceptible people (SP), exposed people (EP), symptomatic infected people (IP), asymptomatic infected people (AP), and removed people (RP) including recovered and death people. |
T62 | 2415-2481 | Sentence | denotes | The birth rate and death rate of people were defined as nP and mP. |
T63 | 2482-2562 | Sentence | denotes | In this model, we set ɅP = nP × NP where NP refer to the total number of people. |
T64 | 2563-2652 | Sentence | denotes | The incubation period and latent period of human infection was defined as 1/ωP and 1/ω’P. |
T65 | 2653-2718 | Sentence | denotes | The infectious period of IP and AP was defined as 1/γP and 1/γ’P. |
T66 | 2719-2778 | Sentence | denotes | The proportion of asymptomatic infection was defined as δP. |
T67 | 2779-2912 | Sentence | denotes | The SP will be infected through sufficient contact with W and IP, and the transmission rates were defined as βW and βP, respectively. |
T68 | 2913-3001 | Sentence | denotes | We also assumed that the transmissibility of AP was κ times that of IP, where 0 ≤ κ ≤ 1. |
T69 | 3002-3080 | Sentence | denotes | Fig. 1 Flowchart of the Bats-Hosts-Reservoir-People transmission network model |