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PMC:7047374 / 1713-3779 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
42 233-250 Species denotes novel coronavirus Tax:2697049
43 252-261 Species denotes 2019-nCoV Tax:2697049
44 283-330 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
45 332-342 Species denotes SARS-CoV-2 Tax:2697049
46 913-919 Species denotes people Tax:9606
47 114-123 Disease denotes pneumonia MESH:D011014
48 724-733 Disease denotes infection MESH:D007239
49 924-932 Disease denotes infected MESH:D007239
51 1460-1466 Species denotes people Tax:9606
59 1563-1569 Species denotes People Tax:9606
60 1698-1703 Species denotes human Tax:9606
61 1888-1894 Species denotes people Tax:9606
62 1933-1939 Species denotes People Tax:9606
63 2055-2065 Species denotes SARS-CoV-2 Tax:2697049
64 1655-1664 Disease denotes infection MESH:D007239
65 1704-1713 Disease denotes infection MESH:D007239

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T14 114-123 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 283-330 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T16 283-316 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T17 332-340 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T18 332-336 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T19 724-733 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T20 1655-1664 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T21 1704-1713 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T22 2055-2063 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 2055-2059 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T18 49-61 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T19 231-232 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 386-393 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Viruses
T21 397-399 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 448-453 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 519-524 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 534-537 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T25 578-583 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 601-602 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T27 662-666 http://purl.obolibrary.org/obo/CLO_0001302 denotes 3, 4
T28 983-984 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T29 1076-1081 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T30 1113-1121 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T31 1173-1180 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T32 1395-1398 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T33 1540-1541 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1542-1546 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T35 1685-1689 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bats
T36 1698-1703 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T37 1725-1729 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes Bats
T38 1807-1815 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T3 1941-1943 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419
T4 2008-2010 Chemical denotes RP http://purl.obolibrary.org/obo/CHEBI_141419

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 1206-1218 http://purl.obolibrary.org/obo/GO_0000003 denotes reproduction
T3 1275-1281 http://purl.obolibrary.org/obo/GO_0040007 denotes growth

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 114-123 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T15 0-10 Sentence denotes Background
T16 11-494 Sentence denotes On 31 December 2019, the World Health Organization (WHO) China Country Office was informed of cases of pneumonia of unknown etiology (unknown cause) detected in Wuhan City, Hubei Province of China, and WHO reported that a novel coronavirus (2019-nCoV), which was named as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) by International Committee on Taxonomy of Viruses on 11 February, 2020, was identified as the causative virus by Chinese authorities on 7 January [1].
T17 495-668 Sentence denotes It is reported that the virus might be bat origin [2], and the transmission of the virus might related to a seafood market (Huanan Seafood Wholesale Market) exposure [3, 4].
T18 669-768 Sentence denotes The genetic features and some clinical findings of the infection have been reported recently [4–6].
T19 769-853 Sentence denotes Potentials for international spread via commercial air travel had been assessed [7].
T20 854-947 Sentence denotes Public health concerns are being paid globally on how many people are infected and suspected.
T21 948-1082 Sentence denotes Therefore, it is urgent to develop a mathematical model to estimate the transmissibility and dynamic of the transmission of the virus.
T22 1083-1155 Sentence denotes There were several researches focusing on mathematical modelling [3, 8].
T23 1156-1381 Sentence denotes These researches focused on calculating the basic reproduction number (R0) by using the serial intervals and intrinsic growth rate [3, 9, 10], or using ordinary differential equations and Markov Chain Monte Carlo methods [8].
T24 1382-1511 Sentence denotes However, the bat origin and the transmission route form the seafood market to people were not considered in the published models.
T25 1512-1714 Sentence denotes In this study, we developed a Bats-Hosts-Reservoir-People (BHRP) transmission network model for simulating the potential transmission from the infection source (probably be bats) to the human infection.
T26 1715-2066 Sentence denotes Since the Bats-Hosts-Reservoir network was hard to explore clearly and public concerns were focusing on the transmission from Huanan Seafood Wholesale Market (reservoir) to people, we simplified the model as Reservoir-People (RP) transmission network model, and R0 was calculated based on the RP model to assess the transmissibility of the SARS-CoV-2.

2_test

Id Subject Object Predicate Lexical cue
32111262-31978945-47462505 763-764 31978945 denotes 4
32111262-32007643-47462506 1291-1292 32007643 denotes 9
T2621 763-764 31978945 denotes 4
T24062 1291-1292 32007643 denotes 9