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PMC:7047374 / 14280-17052 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
219 267-270 Disease denotes ω’P MESH:C000656865
221 546-554 Species denotes patients Tax:9606
223 806-815 Disease denotes infection MESH:D007239
227 966-975 Disease denotes infection MESH:D007239
228 1030-1039 Disease denotes infection MESH:D007239
229 1074-1083 Disease denotes infection MESH:D007239
234 1472-1478 Species denotes people Tax:9606
235 1623-1629 Species denotes people Tax:9606
236 2070-2076 Species denotes people Tax:9606
237 2283-2289 Species denotes people Tax:9606
239 2575-2585 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 1286-1290 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T6 1499-1503 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 2592-2595 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T74 680-690 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T75 806-815 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T76 966-975 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T77 1030-1039 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T78 1074-1083 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T79 1126-1135 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T80 2575-2583 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T81 2575-2579 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T132 290-291 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T133 360-361 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T134 543-545 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T135 613-614 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T136 823-828 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T137 1137-1139 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T138 1188-1190 http://purl.obolibrary.org/obo/CLO_0001547 denotes AP
T139 1265-1268 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T140 1442-1443 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T141 1488-1494 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T142 2022-2024 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T143 2047-2051 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T144 2127-2129 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T145 2352-2354 http://purl.obolibrary.org/obo/CLO_0008192 denotes nP
T146 2531-2536 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T147 2596-2601 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T148 2658-2659 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T149 2697-2698 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T112 1188-1190 Chemical denotes AP http://purl.obolibrary.org/obo/CHEBI_28971|http://purl.obolibrary.org/obo/CHEBI_73393|http://purl.obolibrary.org/obo/CHEBI_81686
T115 1203-1205 Chemical denotes IP http://purl.obolibrary.org/obo/CHEBI_74076

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T119 0-75 Sentence denotes The parameters were estimated based on the following facts and assumptions:
T120 76-146 Sentence denotes The mean incubation period was 5.2 days (95% confidence interval [CI]:
T121 147-160 Sentence denotes 4.1–7.0) [3].
T122 161-255 Sentence denotes We set the same value (5.2 days) of the incubation period and the latent period in this study.
T123 256-280 Sentence denotes Thus, ωP = ω’P = 0.1923.
T124 281-479 Sentence denotes There is a mean 5-day delay from symptom onset to detection/hospitalization of a case (the cases detected in Thailand and Japan were hospitalized from 3 to 7 days after onset, respectively) [19–21].
T125 480-640 Sentence denotes The duration from illness onset to first medical visit for the 45 patients with illness onset before January 1 was estimated to have a mean of 5.8 days (95% CI:
T126 641-654 Sentence denotes 4.3–7.5) [3].
T127 655-723 Sentence denotes In our model, we set the infectious period of the cases as 5.8 days.
T128 724-747 Sentence denotes Therefore, γP = 0.1724.
T129 748-894 Sentence denotes Since there was no data on the proportion of asymptomatic infection of the virus, we simulated the baseline value of proportion of 0.5 (δP = 0.5).
T130 895-1141 Sentence denotes Since there was no evidence about the transmissibility of asymptomatic infection, we assumed that the transmissibility of asymptomatic infection was 0.5 times that of symptomatic infection (κ = 0.5), which was the similar value as influenza [22].
T131 1142-1214 Sentence denotes We assumed that the relative shedding rate of AP compared to IP was 0.5.
T132 1215-1229 Sentence denotes Thus, c = 0.5.
T133 1230-1423 Sentence denotes Since 14 January, 2020, Wuhan City has strengthened the body temperature detection of passengers leaving Wuhan at airports, railway stations, long-distance bus stations and passenger terminals.
T134 1424-1521 Sentence denotes As of January 17, a total of nearly 0.3 million people had been tested for body temperature [23].
T135 1522-1584 Sentence denotes In Wuhan, there are about 2.87 million mobile population [24].
T136 1585-1826 Sentence denotes We assumed that there was 0.1 million people moving out to Wuhan City per day since January 10, 2020, and we believe that this number would increase (mainly due to the winter vacation and the Chinese New Year holiday) until 24 January, 2020.
T137 1827-1908 Sentence denotes This means that the 2.87 million would move out from Wuhan City in about 14 days.
T138 1909-1981 Sentence denotes Therefore, we set the moving volume of 0.2 million per day in our model.
T139 1982-2139 Sentence denotes Since the population of Wuhan was about 11 million at the end of 2018 [25], the rate of people traveling out from Wuhan City would be 0.018 (0.2/11) per day.
T140 2140-2252 Sentence denotes However, we assumed that the normal population mobility before January 1 was 0.1 times as that after January 10.
T141 2253-2370 Sentence denotes Therefore, we set the rate of people moving into and moving out from Wuhan City as 0.0018 per day (nP = mP = 0.0018).
T142 2371-2456 Sentence denotes The parameters bP and bW were estimated by fitting the model with the collected data.
T143 2457-2564 Sentence denotes At the beginning of the simulation, we assumed that the prevalence of the virus in the market was 1/100000.
T144 2565-2756 Sentence denotes Since the SARS-CoV-2 is an RNA virus, we assumed that it could be died in the environment in a short time, but it could be stay for a longer time (10 days) in the unknown hosts in the market.
T145 2757-2772 Sentence denotes We set ε = 0.1.

2_test

Id Subject Object Predicate Lexical cue
32111262-16079251-47462513 1137-1139 16079251 denotes 22
T95670 1137-1139 16079251 denotes 22