PMC:7047369 / 54-2209
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
18 | 104-112 | Disease | denotes | COVID-19 | MESH:C000657245 |
5 | 8-16 | Disease | denotes | COVID-19 | MESH:C000657245 |
14 | 114-124 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
15 | 289-301 | Species | denotes | corona virus | Tax:11118 |
16 | 434-444 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
17 | 496-504 | Species | denotes | SARS CoV | Tax:694009 |
19 | 144-148 | Disease | denotes | SARS | MESH:D045169 |
20 | 219-223 | Disease | denotes | SARS | MESH:D045169 |
21 | 228-232 | Disease | denotes | MERS | MESH:D018352 |
27 | 695-704 | Species | denotes | mammalian | Tax:9606 |
28 | 768-774 | Species | denotes | mammal | Tax:9606 |
29 | 823-834 | Species | denotes | coronavirus | Tax:11118 |
30 | 906-916 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
31 | 1027-1033 | Species | denotes | mammal | Tax:9606 |
52 | 1389-1397 | Species | denotes | patients | Tax:9606 |
53 | 1526-1534 | Species | denotes | children | Tax:9606 |
54 | 1673-1681 | Species | denotes | children | Tax:9606 |
55 | 1697-1701 | Species | denotes | H1N1 | Tax:114727 |
56 | 1712-1717 | Species | denotes | women | Tax:9606 |
57 | 1060-1068 | Disease | denotes | COVID-19 | MESH:C000657245 |
58 | 1073-1078 | Disease | denotes | fever | MESH:D005334 |
59 | 1080-1089 | Disease | denotes | dry cough | MESH:D003371 |
60 | 1091-1098 | Disease | denotes | fatigue | MESH:D005221 |
61 | 1118-1129 | Disease | denotes | sore throat | MESH:D010608 |
62 | 1134-1143 | Disease | denotes | diarrhoea | MESH:D003967 |
63 | 1360-1368 | Disease | denotes | COVID-19 | MESH:C000657245 |
64 | 2015-2023 | Disease | denotes | diabetes | MESH:D003920 |
65 | 2033-2052 | Disease | denotes | respiratory disease | MESH:D012140 |
66 | 2054-2066 | Disease | denotes | hypertension | MESH:D006973 |
67 | 2072-2078 | Disease | denotes | cancer | MESH:D009369 |
68 | 2093-2098 | Disease | denotes | death | MESH:D003643 |
69 | 2102-2121 | Disease | denotes | respiratory failure | MESH:D012131 |
70 | 2123-2128 | Disease | denotes | shock | MESH:D012769 |
71 | 2132-2154 | Disease | denotes | multiple organ failure | MESH:D009102 |
LitCovid-PMC-OGER-BB
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T83 | 82-87 | NCBITaxon:10239 | denotes | virus |
T82 | 104-112 | SP_7 | denotes | COVID-19 |
T81 | 114-124 | SP_7 | denotes | SARS-CoV-2 |
T80 | 136-143 | NCBITaxon:species | denotes | species |
T79 | 144-148 | SP_10 | denotes | SARS |
T78 | 154-160 | NCBITaxon:11118 | denotes | corona |
T77 | 161-168 | NCBITaxon:10239 | denotes | viruses |
T76 | 219-223 | SP_10;NCBITaxon:10633 | denotes | SARS |
T75 | 228-232 | SP_9;NCBITaxon:8088 | denotes | MERS |
T74 | 233-240 | NCBITaxon:10239 | denotes | viruses |
T73 | 285-288 | SP_2 | denotes | bat |
T72 | 289-295 | NCBITaxon:11118 | denotes | corona |
T71 | 296-301 | NCBITaxon:10239 | denotes | virus |
T70 | 344-349 | NCBITaxon:10239 | denotes | virus |
T69 | 375-386 | SP_2;NCBITaxon:7729 | denotes | Rhinolophus |
T68 | 387-390 | SP_2 | denotes | bat |
T67 | 406-416 | SO:0000853 | denotes | homologous |
T66 | 434-444 | SP_7 | denotes | SARS-CoV-2 |
T65 | 445-450 | NCBITaxon:10239 | denotes | virus |
T64 | 467-477 | SO:0000853 | denotes | homologous |
T63 | 496-504 | SP_10 | denotes | SARS CoV |
T62 | 529-533 | SO:0000704 | denotes | gene |
T61 | 635-642 | NCBITaxon:species | denotes | species |
T60 | 695-704 | NCBITaxon:40674 | denotes | mammalian |
T59 | 729-738 | SP_1 | denotes | Pangolins |
T58 | 757-760 | NCBITaxon:6101 | denotes | ant |
T57 | 761-767 | GO:0007631 | denotes | eating |
T56 | 768-774 | NCBITaxon:40674 | denotes | mammal |
T55 | 823-834 | NCBITaxon:11118 | denotes | coronavirus |
T54 | 844-852 | SO:0000853 | denotes | homology |
T53 | 878-884 | SO:0000417 | denotes | domain |
T52 | 906-916 | SP_7 | denotes | SARS-CoV-2 |
T51 | 978-986 | SP_1 | denotes | pangolin |
T50 | 1027-1033 | NCBITaxon:40674 | denotes | mammal |
T49 | 1060-1068 | SP_7 | denotes | COVID-19 |
T48 | 1084-1089 | UBERON:0002048 | denotes | cough |
T47 | 1100-1105 | UBERON:0000004 | denotes | nasal |
T46 | 1123-1129 | UBERON:0000341 | denotes | throat |
T45 | 1360-1368 | SP_7 | denotes | COVID-19 |
T44 | 1518-1524 | UBERON:0007023 | denotes | adults |
T43 | 1703-1711 | GO:0007565 | denotes | pregnant |
T42 | 1999-2013 | UBERON:0004535 | denotes | cardiovascular |
T41 | 2033-2044 | UBERON:0001004 | denotes | respiratory |
T40 | 2093-2098 | GO:0016265 | denotes | death |
T39 | 2102-2113 | UBERON:0001004 | denotes | respiratory |
T38 | 2141-2146 | UBERON:0000062 | denotes | organ |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T1 | 529-533 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
T2 | 1123-1129 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
T3 | 2141-2146 | Body_part | denotes | organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T1 | 1123-1129 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
T2 | 2141-2146 | Body_part | denotes | organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T2 | 8-16 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T3 | 104-112 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T4 | 114-122 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T5 | 144-148 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T6 | 208-217 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
T7 | 219-223 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T8 | 434-442 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T9 | 496-500 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T10 | 906-914 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T11 | 1060-1068 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T12 | 1118-1129 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
T13 | 1134-1143 | Disease | denotes | diarrhoea | http://purl.obolibrary.org/obo/MONDO_0001673 |
T14 | 1360-1368 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T15 | 2015-2023 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
T16 | 2033-2052 | Disease | denotes | respiratory disease | http://purl.obolibrary.org/obo/MONDO_0005087 |
T17 | 2054-2066 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
T18 | 2072-2078 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
T19 | 2102-2121 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
T20 | 2132-2154 | Disease | denotes | multiple organ failure | http://purl.obolibrary.org/obo/MONDO_0043726 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T2 | 82-87 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T3 | 161-168 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T4 | 233-240 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
T5 | 265-266 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T6 | 283-284 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T7 | 285-288 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T8 | 296-301 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T9 | 342-343 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T10 | 344-349 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T11 | 387-390 | http://purl.obolibrary.org/obo/NCBITaxon_9397 | denotes | bat |
T12 | 445-450 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
T13 | 529-533 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
T14 | 599-602 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T15 | 624-625 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T16 | 757-767 | http://purl.obolibrary.org/obo/NCBITaxon_9349 | denotes | ant-eating |
T17 | 821-822 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T18 | 859-860 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T19 | 932-935 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T20 | 1224-1227 | http://purl.obolibrary.org/obo/CL_0000990 | denotes | CDC |
T21 | 1897-1898 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T22 | 2141-2146 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organ |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T1 | 154-160 | Chemical | denotes | corona | http://purl.obolibrary.org/obo/CHEBI_37409 |
T2 | 289-295 | Chemical | denotes | corona | http://purl.obolibrary.org/obo/CHEBI_37409 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 761-767 | http://purl.obolibrary.org/obo/GO_0007631 | denotes | eating |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T1 | 1073-1078 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T2 | 1080-1089 | Phenotype | denotes | dry cough | http://purl.obolibrary.org/obo/HP_0031246 |
T3 | 1091-1098 | Phenotype | denotes | fatigue | http://purl.obolibrary.org/obo/HP_0012378 |
T4 | 1100-1116 | Phenotype | denotes | nasal congestion | http://purl.obolibrary.org/obo/HP_0001742 |
T5 | 1118-1129 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
T6 | 1134-1143 | Phenotype | denotes | diarrhoea | http://purl.obolibrary.org/obo/HP_0002014 |
T7 | 2054-2066 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
T8 | 2072-2078 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
T9 | 2102-2121 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
T10 | 2123-2128 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T3 | 0-77 | Sentence | denotes | What is COVID-19, and what do we know so far about its clinical presentation? |
T4 | 78-169 | Sentence | denotes | The virus responsible for COVID-19, SARS-CoV-2, is in the species SARS-like corona viruses. |
T5 | 170-241 | Sentence | denotes | At 125 nm, it is slightly larger than influenza, SARS and MERS viruses. |
T6 | 242-326 | Sentence | denotes | It is almost certainly a descendant from a bat corona virus of which there are many. |
T7 | 327-451 | Sentence | denotes | The closest is a virus that originated from the Rhinolophus bat which is > 96% homologous with the current SARS-CoV-2 virus. |
T8 | 452-509 | Sentence | denotes | It is only 79% homologous with the original SARS CoV [1]. |
T9 | 510-917 | Sentence | denotes | The near identical gene sequences of 90 analysed cases from outside of China suggests it has likely emerged after a solitary species jump in early December 2019 from an unknown (likely mammalian) intermediate host [2]. Pangolins are an endangered ant-eating mammal from which scientists in Guangzhou have shown a coronavirus with 99% homology, with a receptor binding domain identical to that of SARS-CoV-2. |
T10 | 918-1043 | Sentence | denotes | However, this has not been confirmed, and, in addition, the pangolin's rarity means this may not be the only mammal involved. |
T11 | 1044-1144 | Sentence | denotes | The symptoms of COVID-19 are fever, dry cough, fatigue, nasal congestion, sore throat and diarrhoea. |
T12 | 1145-1334 | Sentence | denotes | On February 14th, the Chinese Center for Disease Control and Prevention (China CDC) published the first details of 44,672 confirmed cases, in the biggest study since the outbreak began [3]. |
T13 | 1335-1444 | Sentence | denotes | Their findings show that COVID-19 was mild for 81% of patients and had an overall case fatality rate of 2.3%. |
T14 | 1445-1505 | Sentence | denotes | Of those confirmed cases, only 2.2% were under 20 years old. |
T15 | 1506-1588 | Sentence | denotes | Compared to adults, children generally present with much milder clinical symptoms. |
T16 | 1589-1682 | Sentence | denotes | It is likely that future serological studies will show much asymptomatic disease in children. |
T17 | 1683-1771 | Sentence | denotes | As opposed to H1N1, pregnant women do not appear to be at higher risk of severe disease. |
T18 | 1772-1933 | Sentence | denotes | The severity of the disease appears to be associated with age, with the elderly most at risk; those over 80 years of age had a Case Fatality Rate (CFR) of 14.8%. |
T19 | 1934-2079 | Sentence | denotes | The CFR was also increased in those with comorbidities including cardiovascular, diabetes, chronic respiratory disease, hypertension, and cancer. |
T20 | 2080-2155 | Sentence | denotes | The cause of death is respiratory failure, shock or multiple organ failure. |