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PMC:7047369 / 54-2209 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
18 104-112 Disease denotes COVID-19 MESH:C000657245
5 8-16 Disease denotes COVID-19 MESH:C000657245
14 114-124 Species denotes SARS-CoV-2 Tax:2697049
15 289-301 Species denotes corona virus Tax:11118
16 434-444 Species denotes SARS-CoV-2 Tax:2697049
17 496-504 Species denotes SARS CoV Tax:694009
19 144-148 Disease denotes SARS MESH:D045169
20 219-223 Disease denotes SARS MESH:D045169
21 228-232 Disease denotes MERS MESH:D018352
27 695-704 Species denotes mammalian Tax:9606
28 768-774 Species denotes mammal Tax:9606
29 823-834 Species denotes coronavirus Tax:11118
30 906-916 Species denotes SARS-CoV-2 Tax:2697049
31 1027-1033 Species denotes mammal Tax:9606
52 1389-1397 Species denotes patients Tax:9606
53 1526-1534 Species denotes children Tax:9606
54 1673-1681 Species denotes children Tax:9606
55 1697-1701 Species denotes H1N1 Tax:114727
56 1712-1717 Species denotes women Tax:9606
57 1060-1068 Disease denotes COVID-19 MESH:C000657245
58 1073-1078 Disease denotes fever MESH:D005334
59 1080-1089 Disease denotes dry cough MESH:D003371
60 1091-1098 Disease denotes fatigue MESH:D005221
61 1118-1129 Disease denotes sore throat MESH:D010608
62 1134-1143 Disease denotes diarrhoea MESH:D003967
63 1360-1368 Disease denotes COVID-19 MESH:C000657245
64 2015-2023 Disease denotes diabetes MESH:D003920
65 2033-2052 Disease denotes respiratory disease MESH:D012140
66 2054-2066 Disease denotes hypertension MESH:D006973
67 2072-2078 Disease denotes cancer MESH:D009369
68 2093-2098 Disease denotes death MESH:D003643
69 2102-2121 Disease denotes respiratory failure MESH:D012131
70 2123-2128 Disease denotes shock MESH:D012769
71 2132-2154 Disease denotes multiple organ failure MESH:D009102

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T83 82-87 NCBITaxon:10239 denotes virus
T82 104-112 SP_7 denotes COVID-19
T81 114-124 SP_7 denotes SARS-CoV-2
T80 136-143 NCBITaxon:species denotes species
T79 144-148 SP_10 denotes SARS
T78 154-160 NCBITaxon:11118 denotes corona
T77 161-168 NCBITaxon:10239 denotes viruses
T76 219-223 SP_10;NCBITaxon:10633 denotes SARS
T75 228-232 SP_9;NCBITaxon:8088 denotes MERS
T74 233-240 NCBITaxon:10239 denotes viruses
T73 285-288 SP_2 denotes bat
T72 289-295 NCBITaxon:11118 denotes corona
T71 296-301 NCBITaxon:10239 denotes virus
T70 344-349 NCBITaxon:10239 denotes virus
T69 375-386 SP_2;NCBITaxon:7729 denotes Rhinolophus
T68 387-390 SP_2 denotes bat
T67 406-416 SO:0000853 denotes homologous
T66 434-444 SP_7 denotes SARS-CoV-2
T65 445-450 NCBITaxon:10239 denotes virus
T64 467-477 SO:0000853 denotes homologous
T63 496-504 SP_10 denotes SARS CoV
T62 529-533 SO:0000704 denotes gene
T61 635-642 NCBITaxon:species denotes species
T60 695-704 NCBITaxon:40674 denotes mammalian
T59 729-738 SP_1 denotes Pangolins
T58 757-760 NCBITaxon:6101 denotes ant
T57 761-767 GO:0007631 denotes eating
T56 768-774 NCBITaxon:40674 denotes mammal
T55 823-834 NCBITaxon:11118 denotes coronavirus
T54 844-852 SO:0000853 denotes homology
T53 878-884 SO:0000417 denotes domain
T52 906-916 SP_7 denotes SARS-CoV-2
T51 978-986 SP_1 denotes pangolin
T50 1027-1033 NCBITaxon:40674 denotes mammal
T49 1060-1068 SP_7 denotes COVID-19
T48 1084-1089 UBERON:0002048 denotes cough
T47 1100-1105 UBERON:0000004 denotes nasal
T46 1123-1129 UBERON:0000341 denotes throat
T45 1360-1368 SP_7 denotes COVID-19
T44 1518-1524 UBERON:0007023 denotes adults
T43 1703-1711 GO:0007565 denotes pregnant
T42 1999-2013 UBERON:0004535 denotes cardiovascular
T41 2033-2044 UBERON:0001004 denotes respiratory
T40 2093-2098 GO:0016265 denotes death
T39 2102-2113 UBERON:0001004 denotes respiratory
T38 2141-2146 UBERON:0000062 denotes organ

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 529-533 Body_part denotes gene http://purl.org/sig/ont/fma/fma74402
T2 1123-1129 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T3 2141-2146 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1123-1129 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T2 2141-2146 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 8-16 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 104-112 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 114-122 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T5 144-148 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T6 208-217 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T7 219-223 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 434-442 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 496-500 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T10 906-914 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T11 1060-1068 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1118-1129 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T13 1134-1143 Disease denotes diarrhoea http://purl.obolibrary.org/obo/MONDO_0001673
T14 1360-1368 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2015-2023 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T16 2033-2052 Disease denotes respiratory disease http://purl.obolibrary.org/obo/MONDO_0005087
T17 2054-2066 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T18 2072-2078 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T19 2102-2121 Disease denotes respiratory failure http://purl.obolibrary.org/obo/MONDO_0021113
T20 2132-2154 Disease denotes multiple organ failure http://purl.obolibrary.org/obo/MONDO_0043726

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 82-87 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 161-168 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T4 233-240 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T5 265-266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T6 283-284 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 285-288 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T8 296-301 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T9 342-343 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 344-349 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T11 387-390 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T12 445-450 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T13 529-533 http://purl.obolibrary.org/obo/OGG_0000000002 denotes gene
T14 599-602 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T15 624-625 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T16 757-767 http://purl.obolibrary.org/obo/NCBITaxon_9349 denotes ant-eating
T17 821-822 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 859-860 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 932-935 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T20 1224-1227 http://purl.obolibrary.org/obo/CL_0000990 denotes CDC
T21 1897-1898 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T22 2141-2146 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 154-160 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T2 289-295 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 761-767 http://purl.obolibrary.org/obo/GO_0007631 denotes eating

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 1073-1078 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T2 1080-1089 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T3 1091-1098 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T4 1100-1116 Phenotype denotes nasal congestion http://purl.obolibrary.org/obo/HP_0001742
T5 1118-1129 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T6 1134-1143 Phenotype denotes diarrhoea http://purl.obolibrary.org/obo/HP_0002014
T7 2054-2066 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T8 2072-2078 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T9 2102-2121 Phenotype denotes respiratory failure http://purl.obolibrary.org/obo/HP_0002878
T10 2123-2128 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-77 Sentence denotes What is COVID-19, and what do we know so far about its clinical presentation?
T4 78-169 Sentence denotes The virus responsible for COVID-19, SARS-CoV-2, is in the species SARS-like corona viruses.
T5 170-241 Sentence denotes At 125 nm, it is slightly larger than influenza, SARS and MERS viruses.
T6 242-326 Sentence denotes It is almost certainly a descendant from a bat corona virus of which there are many.
T7 327-451 Sentence denotes The closest is a virus that originated from the Rhinolophus bat which is > 96% homologous with the current SARS-CoV-2 virus.
T8 452-509 Sentence denotes It is only 79% homologous with the original SARS CoV [1].
T9 510-917 Sentence denotes The near identical gene sequences of 90 analysed cases from outside of China suggests it has likely emerged after a solitary species jump in early December 2019 from an unknown (likely mammalian) intermediate host [2]. Pangolins are an endangered ant-eating mammal from which scientists in Guangzhou have shown a coronavirus with 99% homology, with a receptor binding domain identical to that of SARS-CoV-2.
T10 918-1043 Sentence denotes However, this has not been confirmed, and, in addition, the pangolin's rarity means this may not be the only mammal involved.
T11 1044-1144 Sentence denotes The symptoms of COVID-19 are fever, dry cough, fatigue, nasal congestion, sore throat and diarrhoea.
T12 1145-1334 Sentence denotes On February 14th, the Chinese Center for Disease Control and Prevention (China CDC) published the first details of 44,672 confirmed cases, in the biggest study since the outbreak began [3].
T13 1335-1444 Sentence denotes Their findings show that COVID-19 was mild for 81% of patients and had an overall case fatality rate of 2.3%.
T14 1445-1505 Sentence denotes Of those confirmed cases, only 2.2% were under 20 years old.
T15 1506-1588 Sentence denotes Compared to adults, children generally present with much milder clinical symptoms.
T16 1589-1682 Sentence denotes It is likely that future serological studies will show much asymptomatic disease in children.
T17 1683-1771 Sentence denotes As opposed to H1N1, pregnant women do not appear to be at higher risk of severe disease.
T18 1772-1933 Sentence denotes The severity of the disease appears to be associated with age, with the elderly most at risk; those over 80 years of age had a Case Fatality Rate (CFR) of 14.8%.
T19 1934-2079 Sentence denotes The CFR was also increased in those with comorbidities including cardiovascular, diabetes, chronic respiratory disease, hypertension, and cancer.
T20 2080-2155 Sentence denotes The cause of death is respiratory failure, shock or multiple organ failure.