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PMC:7047003 / 89-6001 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
12 10-32 Species denotes 2019 novel coronavirus Tax:2697049
13 308-315 Species denotes patient Tax:9606
14 34-42 Disease denotes COVID-19 MESH:C000657245
15 44-53 Disease denotes pneumonia MESH:D011014
16 97-106 Disease denotes pneumonia MESH:D011014
17 257-275 Disease denotes COVID-19 pneumonia MESH:C000657245
18 449-467 Disease denotes COVID-19 pneumonia MESH:C000657245
19 570-597 Disease denotes upper respiratory infection MESH:D012141
20 601-610 Disease denotes pneumonia MESH:D011014
21 817-825 Disease denotes COVID-19 MESH:C000657245
44 859-903 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
45 1237-1245 Species denotes patients Tax:9606
46 1266-1274 Species denotes patients Tax:9606
47 1413-1421 Species denotes patients Tax:9606
48 1982-1990 Species denotes patients Tax:9606
49 2163-2171 Species denotes patients Tax:9606
50 905-914 Species denotes MERS-nCoV Tax:1335626
51 916-925 Disease denotes infection MESH:D007239
52 990-999 Disease denotes infection MESH:D007239
53 1004-1010 Disease denotes deaths MESH:D003643
54 1131-1165 Disease denotes traumatic stress disorder symptoms MESH:D000068376
55 1218-1236 Disease denotes MERS-nCoV infected MESH:D018352
56 1333-1339 Disease denotes stress MESH:D000079225
57 1394-1412 Disease denotes MERS-nCoV infected MESH:D018352
58 1507-1528 Disease denotes communication failure MESH:D006333
59 1664-1682 Disease denotes infectious disease MESH:D003141
60 1774-1793 Disease denotes MERS-nCoV infection MESH:D018352
61 1820-1827 Disease denotes anxiety MESH:D001007
62 2031-2038 Disease denotes anxiety MESH:D001007
63 2084-2103 Disease denotes MERS-nCoV infection MESH:D018352
64 2154-2162 Disease denotes infected MESH:D007239
65 2274-2292 Disease denotes infectious disease MESH:D003141
93 2376-2384 Species denotes patients Tax:9606
94 2463-2471 Species denotes patients Tax:9606
95 2568-2576 Species denotes patients Tax:9606
96 4639-4647 Species denotes patients Tax:9606
97 4690-4698 Species denotes patients Tax:9606
98 2385-2393 Disease denotes infected MESH:D007239
99 2399-2417 Disease denotes COVID-19 pneumonia MESH:C000657245
100 2454-2462 Disease denotes infected MESH:D007239
101 2559-2567 Disease denotes COVID-19 MESH:C000657245
102 2629-2638 Disease denotes infection MESH:D007239
103 2650-2655 Disease denotes death MESH:D003643
104 2809-2816 Disease denotes anxiety MESH:D001007
105 2871-2880 Disease denotes infection MESH:D007239
106 2945-2963 Disease denotes infectious disease MESH:D003141
107 2989-2996 Disease denotes anxiety MESH:D001007
108 3076-3087 Disease denotes psychiatric MESH:D001523
109 3146-3154 Disease denotes COVID-19 MESH:C000657245
110 3254-3262 Disease denotes COVID-19 MESH:C000657245
111 3576-3584 Disease denotes COVID-19 MESH:C000657245
112 3728-3734 Disease denotes Trauma MESH:D014947
113 3816-3834 Disease denotes infectious disease MESH:D003141
114 3899-3907 Disease denotes insomnia MESH:D007319
115 3909-3916 Disease denotes anxiety MESH:D001007
116 4630-4638 Disease denotes COVID-19 MESH:C000657245
117 4681-4689 Disease denotes infected MESH:D007239
118 4790-4808 Disease denotes infectious disease MESH:D003141
119 4867-4885 Disease denotes COVID-19 pneumonia MESH:C000657245
126 5571-5580 Species denotes MERS-nCoV Tax:1335626
127 4938-4946 Disease denotes COVID-19 MESH:C000657245
128 5076-5087 Disease denotes psychiatric MESH:D001523
129 5227-5235 Disease denotes COVID-19 MESH:C000657245
130 5484-5492 Disease denotes COVID-19 MESH:C000657245
131 5757-5765 Disease denotes COVID-19 MESH:C000657245

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T103 21-32 NCBITaxon:11118 denotes coronavirus
T102 34-42 SP_7 denotes COVID-19
T101 257-265 SP_7 denotes COVID-19
T100 449-457 SP_7 denotes COVID-19
T99 576-587 UBERON:0001004 denotes respiratory
T98 817-825 SP_7 denotes COVID-19
T97 859-870 SP_9 denotes Middle East
T96 871-882 SP_9;UBERON:0001004 denotes respiratory
T95 883-903 SP_9 denotes syndrome coronavirus
T94 905-909 SP_9 denotes MERS
T93 1004-1010 GO:0016265 denotes deaths
T92 1031-1042 NCBITaxon:1 denotes individuals
T91 1218-1222 SP_9 denotes MERS
T90 1394-1398 SP_9 denotes MERS
T89 1725-1736 NCBITaxon:1 denotes individuals
T88 1774-1778 SP_9 denotes MERS
T87 2084-2088 SP_9 denotes MERS
T86 2185-2196 NCBITaxon:1 denotes individuals
T85 2399-2407 SP_7 denotes COVID-19
T82 2756-2767 NCBITaxon:1 denotes individuals
T81 3146-3154 SP_7 denotes COVID-19
T80 3254-3262 SP_7 denotes COVID-19
T79 3503-3514 NCBITaxon:1 denotes individuals
T78 3576-3584 SP_7 denotes COVID-19
T77 3925-3935 GO:0042052 denotes rumination
T76 4273-4277 UBERON:0000104 denotes life
T75 4413-4424 NCBITaxon:1 denotes individuals
T74 4630-4638 SP_7 denotes COVID-19
T73 4867-4875 SP_7 denotes COVID-19
T72 4938-4946 SP_7 denotes COVID-19
T71 5227-5235 SP_7 denotes COVID-19
T70 5484-5492 SP_7 denotes COVID-19
T69 5571-5575 SP_9 denotes MERS
T68 5757-5765 SP_7 denotes COVID-19
T84 2559-2567 SP_7 denotes COVID-19
T83 2650-2655 GO:0016265 denotes death

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T2 2346-2352 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T3 3116-3122 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T4 3353-3359 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T5 3424-3430 Body_part denotes Mental http://purl.org/sig/ont/fma/fma264279
T6 3540-3546 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T7 3649-3655 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T8 3766-3772 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T9 4066-4072 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T10 4577-4583 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T11 4903-4909 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T12 5040-5046 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T13 5130-5136 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T14 5446-5452 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T15 5623-5629 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 4531-4536 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 34-42 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 44-53 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 97-106 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 257-265 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 266-275 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 449-457 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 458-467 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 570-597 Disease denotes upper respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T9 588-597 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 601-610 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 817-825 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 916-925 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 990-999 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 1126-1156 Disease denotes post-traumatic stress disorder http://purl.obolibrary.org/obo/MONDO_0005146
T15 1131-1156 Disease denotes traumatic stress disorder http://purl.obolibrary.org/obo/MONDO_0003763
T16 1664-1682 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T17 1784-1793 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 1820-1827 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T20 2031-2038 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T22 2094-2103 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 2274-2292 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T24 2399-2407 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 2408-2417 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T26 2559-2567 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 2629-2638 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 2809-2816 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T30 2871-2880 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 2945-2963 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T32 2989-2996 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T34 3146-3154 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 3254-3262 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 3576-3584 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 3728-3734 Disease denotes Trauma http://purl.obolibrary.org/obo/MONDO_0021178
T38 3816-3834 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T39 3899-3907 Disease denotes insomnia http://purl.obolibrary.org/obo/MONDO_0013600
T40 3909-3916 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T42 3925-3935 Disease denotes rumination http://purl.obolibrary.org/obo/MONDO_0001301
T43 4630-4638 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 4790-4808 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T45 4867-4875 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 4876-4885 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T47 4938-4946 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 5227-5235 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 5484-5492 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 5757-5765 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 195-198 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 306-307 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 336-341 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2], a
T4 365-368 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 770-773 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 1111-1112 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 3164-3167 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 3200-3203 http://purl.obolibrary.org/obo/CLO_0001409 denotes 528
T9 4107-4115 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T10 4278-4288 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T11 4319-4329 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T12 4522-4523 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 5340-5347 http://purl.obolibrary.org/obo/OBI_0000968 denotes devices
T14 5415-5416 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 5697-5700 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 5863-5866 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3925-3935 http://purl.obolibrary.org/obo/GO_0036147 denotes rumination

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T2 0-223 Sentence denotes Since the 2019 novel coronavirus (COVID-19) pneumonia outbreak (previously referred to as “Wuhan pneumonia”) that originated in Wuhan, China on December 1, 2019 spread to Korea, an arduous march has just begun in Korea [1].
T3 224-387 Sentence denotes After the spread of the atypical COVID-19 pneumonia from Wuhan, China to Korea by a patient was first reported [2], a community-based spread has occurred in Korea.
T4 388-671 Sentence denotes Although the epidemiological and clinical characteristics of COVID-19 pneumonia in China have been rapidly reported [3], its early phase characteristics, prediction of progress from upper respiratory infection to pneumonia, and other information have not yet been clearly understood.
T5 672-839 Sentence denotes Based on the information regarding the outbreak cases, upgraded quarantine and isolation measures has been suggested to resist the spread of the COVID-19 in Korea [4].
T6 840-1064 Sentence denotes An outbreak of the Middle East respiratory syndrome coronavirus (MERS-nCoV) infection between May and December 2015 in Korea resulted in 186 cases of infection, 38 deaths, and 16,692 exposed individuals who were quarantined.
T7 1065-1293 Sentence denotes Despite the elapsed time since this outbreak, a high risk of post-traumatic stress disorder symptoms were reported by healthcare workers who treated the MERS-nCoV infected patients and by hemodialysis patients in quarantine [5].
T8 1294-1541 Sentence denotes Additionally, the negative emotion and stress experienced by the healthcare workers who treated the MERS-nCoV infected patients were characterized by trigger events categorized into mistake, missing, delay due to communication failure, and others.
T9 1542-1696 Sentence denotes Therefore, the identification of the trigger events was suggested as an important hospital management guideline during an infectious disease outbreak [6].
T10 1697-1903 Sentence denotes Moreover, among the exposed individuals in quarantine not diagnosed with the MERS-nCoV infection, 7.6% and 16.6% presented anxiety and feelings of anger symptoms, respectively, during the quarantine period.
T11 1904-2067 Sentence denotes Even four to six months after the end of the quarantine period, 3.0% and 6.4% patients persistently presented with symptoms of anxiety and anger, respectively [7].
T12 2068-2302 Sentence denotes Thus, after the MERS-nCoV infection outbreak ended in Korea, it was proposed that the infected patients, quarantined individuals, healthcare workers, and public require emotional care and support during an infectious disease outbreak.
T13 2303-2499 Sentence denotes To the best of our knowledge, the detailed mental health problems of the patients infected with COVID-19 pneumonia and healthcare workers treating the infected patients have not yet been reported.
T14 2500-2687 Sentence denotes However, it is suggested that both confirmed and suspected COVID-19 patients may experience the fear of the consequences of this infection, including death and severe physical disability.
T15 2688-2782 Sentence denotes Furthermore, boredom, loneliness, and anger could be experienced by individuals in quarantine.
T16 2783-2940 Sentence denotes It is also suggested that anxiety symptoms and distress may be worsened not only by the infection symptoms, but also by the adverse effects of the treatment.
T17 2941-3102 Sentence denotes The infectious disease outbreaks commonly cause anxiety and fear, uncertainty, and stigmatization that can be prevented by medical and psychiatric treatment [8].
T18 3103-3193 Sentence denotes The need for mental health care during the COVID-19 outbreak has been emphasized in Korea.
T19 3194-3529 Sentence denotes Since 528 and 173 Koreans who escaped from Wuhan due to the COVID-19 outbreak in China have been quarantined in Asan and Jincheon, respectively, in Korea, the mental health professionals, including psychiatrists from the National Mental Health Center have been deployed to provide psychological counseling to individuals in quarantine.
T20 3530-3694 Sentence denotes Moreover, mental health care services for the COVID-19 outbreak are being provided by national hospitals and community mental health centers throughout the country.
T21 3695-3849 Sentence denotes The National Center for Disaster Trauma distributed leaflets promoting mental health care against the distress caused by infectious disease outbreaks [9].
T22 3850-4094 Sentence denotes According to this leaflet [9], somatic symptoms, insomnia, anxiety, anger, rumination, decreased concentration, low mood, and loss of energy are listed as the warning symptoms that should be evaluated and managed by mental health professionals.
T23 4095-4439 Sentence denotes Especially, focusing on the reliable information, permitting the expression of your negative emotions, keeping in touch with family, friends, and colleagues, maintaining regular life activities, participating in pleasurable activities, and maintaining your pride are listed as the coping skill recommendations for the individuals in quarantine.
T24 4440-4537 Sentence denotes It is of utmost importance that this information is disseminated to the masses on a larger scale.
T25 4538-4886 Sentence denotes It is also necessary that the detailed mental health problems of the confirmed or suspected COVID-19 patients, healthcare workers treating the infected patients, and public should be collected to update the information regarding the distress caused by infectious disease outbreaks and provide more advancedmental health care for COVID-19 pneumonia.
T26 4887-5018 Sentence denotes In terms of the mental health care response to the COVID-19 outbreak in China, Xiang et al. [8]. suggested three important factors:
T27 5019-5366 Sentence denotes 1) multidisciplinary mental health teams (psychiatrists, psychiatric nurses, clinical psychologists, and other mental health professionals), 2) clear communication with regular and accurate updates about the COVID-19 outbreak, and 3) establishment of secure services to provide psychological counseling (e.g., electronic devices and applications).
T28 5367-5511 Sentence denotes These suggestions by Xiang et al. [8]. could be a good reference for providing mental health care in response to the COVID-19 outbreak in Korea.
T29 5512-5746 Sentence denotes Furthermore, following the 2014 Sewol ferry disaster, 2015 MERS-nCoV outbreak, and 2017 Pohang earthquake, the mental health care system to combat distress caused by national disasters has been gradually established and improved [10].
T30 5747-5912 Sentence denotes Thus, the COVID-19 outbreak raises the question of how provision of psychological support during national disasters has increased and what is still lacking in Korea.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 44-53 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 97-106 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 266-275 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 458-467 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 576-597 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T6 601-610 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 1820-1827 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T8 2031-2038 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T9 2408-2417 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 2809-2816 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T11 2989-2996 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T12 3899-3907 Phenotype denotes insomnia http://purl.obolibrary.org/obo/HP_0100785
T13 3909-3916 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T14 4876-4885 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090