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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1 47-69 Species denotes 2019 Novel Coronavirus Tax:2697049
12 99-121 Species denotes 2019 novel coronavirus Tax:2697049
13 397-404 Species denotes patient Tax:9606
14 123-131 Disease denotes COVID-19 MESH:C000657245
15 133-142 Disease denotes pneumonia MESH:D011014
16 186-195 Disease denotes pneumonia MESH:D011014
17 346-364 Disease denotes COVID-19 pneumonia MESH:C000657245
18 538-556 Disease denotes COVID-19 pneumonia MESH:C000657245
19 659-686 Disease denotes upper respiratory infection MESH:D012141
20 690-699 Disease denotes pneumonia MESH:D011014
21 906-914 Disease denotes COVID-19 MESH:C000657245
44 948-992 Species denotes Middle East respiratory syndrome coronavirus Tax:1335626
45 1326-1334 Species denotes patients Tax:9606
46 1355-1363 Species denotes patients Tax:9606
47 1502-1510 Species denotes patients Tax:9606
48 2071-2079 Species denotes patients Tax:9606
49 2252-2260 Species denotes patients Tax:9606
50 994-1003 Species denotes MERS-nCoV Tax:1335626
51 1005-1014 Disease denotes infection MESH:D007239
52 1079-1088 Disease denotes infection MESH:D007239
53 1093-1099 Disease denotes deaths MESH:D003643
54 1220-1254 Disease denotes traumatic stress disorder symptoms MESH:D000068376
55 1307-1325 Disease denotes MERS-nCoV infected MESH:D018352
56 1422-1428 Disease denotes stress MESH:D000079225
57 1483-1501 Disease denotes MERS-nCoV infected MESH:D018352
58 1596-1617 Disease denotes communication failure MESH:D006333
59 1753-1771 Disease denotes infectious disease MESH:D003141
60 1863-1882 Disease denotes MERS-nCoV infection MESH:D018352
61 1909-1916 Disease denotes anxiety MESH:D001007
62 2120-2127 Disease denotes anxiety MESH:D001007
63 2173-2192 Disease denotes MERS-nCoV infection MESH:D018352
64 2243-2251 Disease denotes infected MESH:D007239
65 2363-2381 Disease denotes infectious disease MESH:D003141
93 2465-2473 Species denotes patients Tax:9606
94 2552-2560 Species denotes patients Tax:9606
95 2657-2665 Species denotes patients Tax:9606
96 4728-4736 Species denotes patients Tax:9606
97 4779-4787 Species denotes patients Tax:9606
98 2474-2482 Disease denotes infected MESH:D007239
99 2488-2506 Disease denotes COVID-19 pneumonia MESH:C000657245
100 2543-2551 Disease denotes infected MESH:D007239
101 2648-2656 Disease denotes COVID-19 MESH:C000657245
102 2718-2727 Disease denotes infection MESH:D007239
103 2739-2744 Disease denotes death MESH:D003643
104 2898-2905 Disease denotes anxiety MESH:D001007
105 2960-2969 Disease denotes infection MESH:D007239
106 3034-3052 Disease denotes infectious disease MESH:D003141
107 3078-3085 Disease denotes anxiety MESH:D001007
108 3165-3176 Disease denotes psychiatric MESH:D001523
109 3235-3243 Disease denotes COVID-19 MESH:C000657245
110 3343-3351 Disease denotes COVID-19 MESH:C000657245
111 3665-3673 Disease denotes COVID-19 MESH:C000657245
112 3817-3823 Disease denotes Trauma MESH:D014947
113 3905-3923 Disease denotes infectious disease MESH:D003141
114 3988-3996 Disease denotes insomnia MESH:D007319
115 3998-4005 Disease denotes anxiety MESH:D001007
116 4719-4727 Disease denotes COVID-19 MESH:C000657245
117 4770-4778 Disease denotes infected MESH:D007239
118 4879-4897 Disease denotes infectious disease MESH:D003141
119 4956-4974 Disease denotes COVID-19 pneumonia MESH:C000657245
126 5660-5669 Species denotes MERS-nCoV Tax:1335626
127 5027-5035 Disease denotes COVID-19 MESH:C000657245
128 5165-5176 Disease denotes psychiatric MESH:D001523
129 5316-5324 Disease denotes COVID-19 MESH:C000657245
130 5573-5581 Disease denotes COVID-19 MESH:C000657245
131 5846-5854 Disease denotes COVID-19 MESH:C000657245

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T103 110-121 NCBITaxon:11118 denotes coronavirus
T102 123-131 SP_7 denotes COVID-19
T101 346-354 SP_7 denotes COVID-19
T100 538-546 SP_7 denotes COVID-19
T99 665-676 UBERON:0001004 denotes respiratory
T98 906-914 SP_7 denotes COVID-19
T97 948-959 SP_9 denotes Middle East
T96 960-971 SP_9;UBERON:0001004 denotes respiratory
T95 972-992 SP_9 denotes syndrome coronavirus
T94 994-998 SP_9 denotes MERS
T93 1093-1099 GO:0016265 denotes deaths
T92 1120-1131 NCBITaxon:1 denotes individuals
T91 1307-1311 SP_9 denotes MERS
T90 1483-1487 SP_9 denotes MERS
T89 1814-1825 NCBITaxon:1 denotes individuals
T88 1863-1867 SP_9 denotes MERS
T87 2173-2177 SP_9 denotes MERS
T86 2274-2285 NCBITaxon:1 denotes individuals
T85 2488-2496 SP_7 denotes COVID-19
T82 2845-2856 NCBITaxon:1 denotes individuals
T81 3235-3243 SP_7 denotes COVID-19
T80 3343-3351 SP_7 denotes COVID-19
T79 3592-3603 NCBITaxon:1 denotes individuals
T78 3665-3673 SP_7 denotes COVID-19
T77 4014-4024 GO:0042052 denotes rumination
T76 4362-4366 UBERON:0000104 denotes life
T75 4502-4513 NCBITaxon:1 denotes individuals
T74 4719-4727 SP_7 denotes COVID-19
T73 4956-4964 SP_7 denotes COVID-19
T72 5027-5035 SP_7 denotes COVID-19
T71 5316-5324 SP_7 denotes COVID-19
T70 5573-5581 SP_7 denotes COVID-19
T69 5660-5664 SP_9 denotes MERS
T68 5846-5854 SP_7 denotes COVID-19
T2 58-69 NCBITaxon:11118 denotes Coronavirus
T84 2648-2656 SP_7 denotes COVID-19
T83 2739-2744 GO:0016265 denotes death

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 0-6 Body_part denotes Mental http://purl.org/sig/ont/fma/fma264279
T2 2435-2441 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T3 3205-3211 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T4 3442-3448 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T5 3513-3519 Body_part denotes Mental http://purl.org/sig/ont/fma/fma264279
T6 3629-3635 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T7 3738-3744 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T8 3855-3861 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T9 4155-4161 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T10 4666-4672 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T11 4992-4998 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T12 5129-5135 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T13 5219-5225 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T14 5535-5541 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279
T15 5712-5718 Body_part denotes mental http://purl.org/sig/ont/fma/fma264279

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 4620-4625 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 123-131 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 133-142 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 186-195 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 346-354 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 355-364 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 538-546 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 547-556 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T8 659-686 Disease denotes upper respiratory infection http://purl.obolibrary.org/obo/MONDO_0024355
T9 677-686 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T10 690-699 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T11 906-914 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1005-1014 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T13 1079-1088 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 1215-1245 Disease denotes post-traumatic stress disorder http://purl.obolibrary.org/obo/MONDO_0005146
T15 1220-1245 Disease denotes traumatic stress disorder http://purl.obolibrary.org/obo/MONDO_0003763
T16 1753-1771 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T17 1873-1882 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T18 1909-1916 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T20 2120-2127 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T22 2183-2192 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 2363-2381 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T24 2488-2496 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 2497-2506 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T26 2648-2656 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 2718-2727 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T28 2898-2905 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T30 2960-2969 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T31 3034-3052 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T32 3078-3085 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T34 3235-3243 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T35 3343-3351 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 3665-3673 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T37 3817-3823 Disease denotes Trauma http://purl.obolibrary.org/obo/MONDO_0021178
T38 3905-3923 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T39 3988-3996 Disease denotes insomnia http://purl.obolibrary.org/obo/MONDO_0013600
T40 3998-4005 Disease denotes anxiety http://purl.obolibrary.org/obo/MONDO_0005618|http://purl.obolibrary.org/obo/MONDO_0011918
T42 4014-4024 Disease denotes rumination http://purl.obolibrary.org/obo/MONDO_0001301
T43 4719-4727 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T44 4879-4897 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550
T45 4956-4964 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T46 4965-4974 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T47 5027-5035 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T48 5316-5324 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T49 5573-5581 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T50 5846-5854 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 284-287 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T2 395-396 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T3 425-430 http://purl.obolibrary.org/obo/CLO_0001236 denotes 2], a
T4 454-457 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T5 859-862 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 1200-1201 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T7 3253-3256 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T8 3289-3292 http://purl.obolibrary.org/obo/CLO_0001409 denotes 528
T9 4196-4204 http://purl.obolibrary.org/obo/CLO_0009985 denotes focusing
T10 4367-4377 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T11 4408-4418 http://purl.obolibrary.org/obo/CLO_0001658 denotes activities
T12 4611-4612 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 5429-5436 http://purl.obolibrary.org/obo/OBI_0000968 denotes devices
T14 5504-5505 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T15 5786-5789 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T16 5952-5955 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 4014-4024 http://purl.obolibrary.org/obo/GO_0036147 denotes rumination

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-87 Sentence denotes Mental Health Care Measures in Response to the 2019 Novel Coronavirus Outbreak in Korea
T2 89-312 Sentence denotes Since the 2019 novel coronavirus (COVID-19) pneumonia outbreak (previously referred to as “Wuhan pneumonia”) that originated in Wuhan, China on December 1, 2019 spread to Korea, an arduous march has just begun in Korea [1].
T3 313-476 Sentence denotes After the spread of the atypical COVID-19 pneumonia from Wuhan, China to Korea by a patient was first reported [2], a community-based spread has occurred in Korea.
T4 477-760 Sentence denotes Although the epidemiological and clinical characteristics of COVID-19 pneumonia in China have been rapidly reported [3], its early phase characteristics, prediction of progress from upper respiratory infection to pneumonia, and other information have not yet been clearly understood.
T5 761-928 Sentence denotes Based on the information regarding the outbreak cases, upgraded quarantine and isolation measures has been suggested to resist the spread of the COVID-19 in Korea [4].
T6 929-1153 Sentence denotes An outbreak of the Middle East respiratory syndrome coronavirus (MERS-nCoV) infection between May and December 2015 in Korea resulted in 186 cases of infection, 38 deaths, and 16,692 exposed individuals who were quarantined.
T7 1154-1382 Sentence denotes Despite the elapsed time since this outbreak, a high risk of post-traumatic stress disorder symptoms were reported by healthcare workers who treated the MERS-nCoV infected patients and by hemodialysis patients in quarantine [5].
T8 1383-1630 Sentence denotes Additionally, the negative emotion and stress experienced by the healthcare workers who treated the MERS-nCoV infected patients were characterized by trigger events categorized into mistake, missing, delay due to communication failure, and others.
T9 1631-1785 Sentence denotes Therefore, the identification of the trigger events was suggested as an important hospital management guideline during an infectious disease outbreak [6].
T10 1786-1992 Sentence denotes Moreover, among the exposed individuals in quarantine not diagnosed with the MERS-nCoV infection, 7.6% and 16.6% presented anxiety and feelings of anger symptoms, respectively, during the quarantine period.
T11 1993-2156 Sentence denotes Even four to six months after the end of the quarantine period, 3.0% and 6.4% patients persistently presented with symptoms of anxiety and anger, respectively [7].
T12 2157-2391 Sentence denotes Thus, after the MERS-nCoV infection outbreak ended in Korea, it was proposed that the infected patients, quarantined individuals, healthcare workers, and public require emotional care and support during an infectious disease outbreak.
T13 2392-2588 Sentence denotes To the best of our knowledge, the detailed mental health problems of the patients infected with COVID-19 pneumonia and healthcare workers treating the infected patients have not yet been reported.
T14 2589-2776 Sentence denotes However, it is suggested that both confirmed and suspected COVID-19 patients may experience the fear of the consequences of this infection, including death and severe physical disability.
T15 2777-2871 Sentence denotes Furthermore, boredom, loneliness, and anger could be experienced by individuals in quarantine.
T16 2872-3029 Sentence denotes It is also suggested that anxiety symptoms and distress may be worsened not only by the infection symptoms, but also by the adverse effects of the treatment.
T17 3030-3191 Sentence denotes The infectious disease outbreaks commonly cause anxiety and fear, uncertainty, and stigmatization that can be prevented by medical and psychiatric treatment [8].
T18 3192-3282 Sentence denotes The need for mental health care during the COVID-19 outbreak has been emphasized in Korea.
T19 3283-3618 Sentence denotes Since 528 and 173 Koreans who escaped from Wuhan due to the COVID-19 outbreak in China have been quarantined in Asan and Jincheon, respectively, in Korea, the mental health professionals, including psychiatrists from the National Mental Health Center have been deployed to provide psychological counseling to individuals in quarantine.
T20 3619-3783 Sentence denotes Moreover, mental health care services for the COVID-19 outbreak are being provided by national hospitals and community mental health centers throughout the country.
T21 3784-3938 Sentence denotes The National Center for Disaster Trauma distributed leaflets promoting mental health care against the distress caused by infectious disease outbreaks [9].
T22 3939-4183 Sentence denotes According to this leaflet [9], somatic symptoms, insomnia, anxiety, anger, rumination, decreased concentration, low mood, and loss of energy are listed as the warning symptoms that should be evaluated and managed by mental health professionals.
T23 4184-4528 Sentence denotes Especially, focusing on the reliable information, permitting the expression of your negative emotions, keeping in touch with family, friends, and colleagues, maintaining regular life activities, participating in pleasurable activities, and maintaining your pride are listed as the coping skill recommendations for the individuals in quarantine.
T24 4529-4626 Sentence denotes It is of utmost importance that this information is disseminated to the masses on a larger scale.
T25 4627-4975 Sentence denotes It is also necessary that the detailed mental health problems of the confirmed or suspected COVID-19 patients, healthcare workers treating the infected patients, and public should be collected to update the information regarding the distress caused by infectious disease outbreaks and provide more advancedmental health care for COVID-19 pneumonia.
T26 4976-5107 Sentence denotes In terms of the mental health care response to the COVID-19 outbreak in China, Xiang et al. [8]. suggested three important factors:
T27 5108-5455 Sentence denotes 1) multidisciplinary mental health teams (psychiatrists, psychiatric nurses, clinical psychologists, and other mental health professionals), 2) clear communication with regular and accurate updates about the COVID-19 outbreak, and 3) establishment of secure services to provide psychological counseling (e.g., electronic devices and applications).
T28 5456-5600 Sentence denotes These suggestions by Xiang et al. [8]. could be a good reference for providing mental health care in response to the COVID-19 outbreak in Korea.
T29 5601-5835 Sentence denotes Furthermore, following the 2014 Sewol ferry disaster, 2015 MERS-nCoV outbreak, and 2017 Pohang earthquake, the mental health care system to combat distress caused by national disasters has been gradually established and improved [10].
T30 5836-6001 Sentence denotes Thus, the COVID-19 outbreak raises the question of how provision of psychological support during national disasters has increased and what is still lacking in Korea.
T31 6003-6141 Sentence denotes This work was supported by the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (2019R1A2C1090146).

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 133-142 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 186-195 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 355-364 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 547-556 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T5 665-686 Phenotype denotes respiratory infection http://purl.obolibrary.org/obo/HP_0011947
T6 690-699 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 1909-1916 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T8 2120-2127 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T9 2497-2506 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 2898-2905 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T11 3078-3085 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T12 3988-3996 Phenotype denotes insomnia http://purl.obolibrary.org/obo/HP_0100785
T13 3998-4005 Phenotype denotes anxiety http://purl.obolibrary.org/obo/HP_0000739
T14 4965-4974 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090