PMC:7045880 / 5745-6310
Annnotations
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 143 | 373-383 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T27 | 51-57 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T28 | 113-116 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T29 | 145-149 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T30 | 384-387 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
| T31 | 558-564 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T28 | 373-381 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T55 | 136-149 | http://purl.obolibrary.org/obo/CL_0000010 | denotes | cultured cell |
| T56 | 170-175 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T57 | 192-193 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T58 | 284-289 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | genes |
| T59 | 544-545 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T27 | 384-387 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T28 | 460-462 | Chemical | denotes | PE | http://purl.obolibrary.org/obo/CHEBI_16038|http://purl.obolibrary.org/obo/CHEBI_17553|http://purl.obolibrary.org/obo/CHEBI_74762 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 72-85 | http://purl.obolibrary.org/obo/GO_0003968 | denotes | transcriptase |
| T9 | 72-85 | http://purl.obolibrary.org/obo/GO_0003899 | denotes | transcriptase |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T53 | 0-2 | Sentence | denotes | 4. |
| T54 | 3-57 | Sentence | denotes | Next generation sequencing of viral full-length genome |
| T55 | 58-191 | Sentence | denotes | Using reverse transcriptase, cDNA was synthesized from RNA extracted from the cultured cell medium in which the virus was replicated. |
| T56 | 192-397 | Sentence | denotes | A next generation sequencing (NGS) library was constructed after amplifying the full-length genes of the isolates using the synthesized cDNA and primers designed based on published SARS-CoV-2 DNA sequence. |
| T57 | 398-463 | Sentence | denotes | The prepared library was purified and analyzed with Miseq 150 PE. |
| T58 | 464-565 | Sentence | denotes | De novo assembly was performed on the sequenced product using Megahit to secure a full-length genome. |