PMC:7045880 / 3189-3699 JSONTXT

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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7045880","sourcedb":"PMC","sourceid":"7045880","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7045880","text":"1. Clinical specimens and RNA extraction\nNasopharyngeal and oropharyngeal swab and sputum samples were collected from symptomatic patients to detect SARS-CoV-2 by real-time reverse transcriptase (RT)-PCR. RNA was extracted from clinical samples with a QIAamp viral RNA mini kit (QIAGEN, Hilden, Germany) following the manufacturer’s instructions. All specimens were handled under a biosafety cabinet according to laboratory biosafety guidelines of Korea Centers for Disease Control and Prevention for COVID-19.","divisions":[{"label":"title","span":{"begin":0,"end":40}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"115","span":{"begin":130,"end":138},"obj":"Species"},{"id":"116","span":{"begin":149,"end":159},"obj":"Species"},{"id":"117","span":{"begin":501,"end":509},"obj":"Disease"}],"attributes":[{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"Tax:9606"},{"id":"A116","pred":"tao:has_database_id","subj":"116","obj":"Tax:2697049"},{"id":"A117","pred":"tao:has_database_id","subj":"117","obj":"MESH:C000657245"},{"subj":"115","pred":"source","obj":"LitCovid-PubTator"},{"subj":"116","pred":"source","obj":"LitCovid-PubTator"},{"subj":"117","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T13","span":{"begin":26,"end":29},"obj":"Body_part"},{"id":"T14","span":{"begin":83,"end":89},"obj":"Body_part"},{"id":"T15","span":{"begin":205,"end":208},"obj":"Body_part"},{"id":"T16","span":{"begin":265,"end":268},"obj":"Body_part"}],"attributes":[{"id":"A13","pred":"fma_id","subj":"T13","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A14","pred":"fma_id","subj":"T14","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A15","pred":"fma_id","subj":"T15","obj":"http://purl.org/sig/ont/fma/fma67095"},{"id":"A16","pred":"fma_id","subj":"T16","obj":"http://purl.org/sig/ont/fma/fma67095"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T14","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T15","pred":"source","obj":"LitCovid-PD-FMA-UBERON"},{"subj":"T16","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T4","span":{"begin":83,"end":89},"obj":"Body_part"}],"attributes":[{"id":"A4","pred":"uberon_id","subj":"T4","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"subj":"T4","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T23","span":{"begin":149,"end":157},"obj":"Disease"},{"id":"T24","span":{"begin":501,"end":509},"obj":"Disease"}],"attributes":[{"id":"A23","pred":"mondo_id","subj":"T23","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A24","pred":"mondo_id","subj":"T24","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T23","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T24","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T33","span":{"begin":250,"end":251},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T34","span":{"begin":380,"end":381},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T33","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T34","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T2","span":{"begin":181,"end":194},"obj":"http://purl.obolibrary.org/obo/GO_0003968"},{"id":"T3","span":{"begin":181,"end":194},"obj":"http://purl.obolibrary.org/obo/GO_0003899"}],"attributes":[{"subj":"T2","pred":"source","obj":"LitCovid-PD-GO-BP"},{"subj":"T3","pred":"source","obj":"LitCovid-PD-GO-BP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T32","span":{"begin":0,"end":2},"obj":"Sentence"},{"id":"T33","span":{"begin":3,"end":40},"obj":"Sentence"},{"id":"T34","span":{"begin":41,"end":204},"obj":"Sentence"},{"id":"T35","span":{"begin":205,"end":346},"obj":"Sentence"},{"id":"T36","span":{"begin":347,"end":510},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T32","pred":"source","obj":"LitCovid-sentences"},{"subj":"T33","pred":"source","obj":"LitCovid-sentences"},{"subj":"T34","pred":"source","obj":"LitCovid-sentences"},{"subj":"T35","pred":"source","obj":"LitCovid-sentences"},{"subj":"T36","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#eca093","default":true},{"id":"LitCovid-PD-FMA-UBERON","color":"#939fec"},{"id":"LitCovid-PD-UBERON","color":"#b9ec93"},{"id":"LitCovid-PD-MONDO","color":"#ec93d3"},{"id":"LitCovid-PD-CLO","color":"#93ecea"},{"id":"LitCovid-PD-GO-BP","color":"#ecd093"},{"id":"LitCovid-sentences","color":"#b693ec"}]}]}}