PMC:7045878 / 7214-10826
Annnotations
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
155 | 59-67 | Disease | denotes | COVID-19 | MESH:C000657245 |
148 | 45-53 | Species | denotes | patients | Tax:9606 |
149 | 77-80 | Species | denotes | men | Tax:9606 |
150 | 101-106 | Species | denotes | women | Tax:9606 |
151 | 192-200 | Species | denotes | patients | Tax:9606 |
152 | 231-239 | Species | denotes | patients | Tax:9606 |
153 | 295-302 | Species | denotes | patient | Tax:9606 |
154 | 353-361 | Species | denotes | patients | Tax:9606 |
162 | 537-545 | Species | denotes | patients | Tax:9606 |
163 | 615-623 | Species | denotes | patients | Tax:9606 |
164 | 661-669 | Species | denotes | patients | Tax:9606 |
165 | 698-706 | Species | denotes | patients | Tax:9606 |
166 | 510-530 | Disease | denotes | secondary infections | MESH:D060085 |
167 | 570-589 | Disease | denotes | secondary infection | MESH:D060085 |
181 | 820-828 | Species | denotes | patients | Tax:9606 |
182 | 853-861 | Species | denotes | patients | Tax:9606 |
183 | 901-909 | Species | denotes | patients | Tax:9606 |
184 | 929-937 | Species | denotes | patients | Tax:9606 |
185 | 966-974 | Species | denotes | patients | Tax:9606 |
186 | 995-1003 | Species | denotes | patients | Tax:9606 |
187 | 1029-1037 | Species | denotes | patients | Tax:9606 |
188 | 1137-1145 | Species | denotes | patients | Tax:9606 |
189 | 796-801 | Disease | denotes | fever | MESH:D005334 |
190 | 838-849 | Disease | denotes | sore throat | MESH:D010608 |
191 | 871-876 | Disease | denotes | cough | MESH:D003371 |
192 | 951-962 | Disease | denotes | muscle ache | MESH:D063806 |
193 | 1039-1048 | Disease | denotes | pneumonia | MESH:D011014 |
204 | 1245-1252 | Species | denotes | patient | Tax:9606 |
205 | 1353-1361 | Species | denotes | patients | Tax:9606 |
206 | 1508-1515 | Species | denotes | patient | Tax:9606 |
207 | 1418-1430 | Disease | denotes | hypertension | MESH:D006973 |
208 | 1432-1440 | Disease | denotes | diabetes | MESH:D003920 |
209 | 1442-1448 | Disease | denotes | asthma | MESH:D001249 |
210 | 1458-1466 | Disease | denotes | rhinitis | MESH:D012220 |
211 | 1468-1480 | Disease | denotes | dyslipidemia | MESH:D050171 |
212 | 1486-1500 | Disease | denotes | hypothyroidism | MESH:D007037 |
213 | 1542-1553 | Disease | denotes | lung cancer | MESH:D008175 |
215 | 1971-1979 | Disease | denotes | COVID-19 | MESH:C000657245 |
222 | 2127-2135 | Species | denotes | patients | Tax:9606 |
223 | 2188-2196 | Species | denotes | patients | Tax:9606 |
224 | 2359-2367 | Species | denotes | patients | Tax:9606 |
225 | 2524-2532 | Species | denotes | patients | Tax:9606 |
226 | 2546-2553 | Species | denotes | patient | Tax:9606 |
227 | 2373-2392 | Disease | denotes | secondary infection | MESH:D060085 |
232 | 2874-2882 | Species | denotes | patients | Tax:9606 |
233 | 3078-3086 | Species | denotes | patients | Tax:9606 |
234 | 2690-2699 | Disease | denotes | infection | MESH:D007239 |
235 | 2888-2907 | Disease | denotes | secondary infection | MESH:D060085 |
241 | 3346-3354 | Species | denotes | patients | Tax:9606 |
242 | 3450-3458 | Species | denotes | patients | Tax:9606 |
243 | 3480-3488 | Species | denotes | patients | Tax:9606 |
244 | 3521-3529 | Species | denotes | patients | Tax:9606 |
245 | 3575-3582 | Species | denotes | patient | Tax:9606 |
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T5 | 843-849 | Body_part | denotes | throat | http://purl.org/sig/ont/fma/fma228738 |
T6 | 880-886 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
T7 | 951-957 | Body_part | denotes | muscle | http://purl.org/sig/ont/fma/fma32558 |
T8 | 1542-1546 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
LitCovid-PD-UBERON
Id | Subject | Object | Predicate | Lexical cue | uberon_id |
---|---|---|---|---|---|
T3 | 843-849 | Body_part | denotes | throat | http://purl.obolibrary.org/obo/UBERON_0000341 |
T4 | 880-886 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
T5 | 1542-1546 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T41 | 59-67 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T42 | 520-533 | Disease | denotes | infections in | http://purl.obolibrary.org/obo/MONDO_0005550 |
T43 | 580-589 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T44 | 838-849 | Disease | denotes | sore throat | http://purl.obolibrary.org/obo/MONDO_0002258 |
T45 | 1039-1048 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
T46 | 1418-1430 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
T47 | 1432-1440 | Disease | denotes | diabetes | http://purl.obolibrary.org/obo/MONDO_0005015 |
T48 | 1442-1448 | Disease | denotes | asthma | http://purl.obolibrary.org/obo/MONDO_0004979 |
T49 | 1450-1466 | Disease | denotes | chronic rhinitis | http://purl.obolibrary.org/obo/MONDO_0004514 |
T50 | 1458-1466 | Disease | denotes | rhinitis | http://purl.obolibrary.org/obo/MONDO_0003014 |
T51 | 1468-1480 | Disease | denotes | dyslipidemia | http://purl.obolibrary.org/obo/MONDO_0002525 |
T52 | 1486-1500 | Disease | denotes | hypothyroidism | http://purl.obolibrary.org/obo/MONDO_0005420 |
T53 | 1542-1553 | Disease | denotes | lung cancer | http://purl.obolibrary.org/obo/MONDO_0008903 |
T54 | 1547-1553 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
T55 | 1971-1979 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T56 | 2383-2392 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T57 | 2690-2699 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
T58 | 2898-2907 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T25 | 121-122 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T26 | 363-365 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T27 | 951-957 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | muscle |
T28 | 951-957 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | muscle |
T29 | 951-957 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | muscle |
T30 | 951-957 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | muscle |
T31 | 1026-1028 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
T32 | 1265-1266 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T33 | 1309-1310 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T34 | 1542-1546 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
T35 | 1542-1546 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
T36 | 1566-1570 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
T37 | 1673-1679 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T38 | 1704-1709 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T39 | 1858-1862 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T40 | 1910-1915 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T41 | 2141-2142 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T42 | 2740-2742 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
T43 | 3156-3157 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T44 | 3186-3187 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T45 | 3378-3379 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T46 | 3447-3449 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
LitCovid-PD-GO-BP
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T1 | 3388-3394 | http://purl.obolibrary.org/obo/GO_0060361 | denotes | flight |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T54 | 0-2 | Sentence | denotes | 2. |
T55 | 3-34 | Sentence | denotes | Epidemiological characteristics |
T56 | 35-153 | Sentence | denotes | Of the 28 patients with COVID-19, 15 were men (53.6%) and 13 were women (46.1%), with a mean age of 42.6 years (range: |
T57 | 154-167 | Sentence | denotes | 20–73 years). |
T58 | 168-342 | Sentence | denotes | Regarding age groups, 8 patients were in their 50’s (28.6%), 6 patients each were in their 20’s, 30’s, and 40’s (21.4%), and 1 patient each was in their 60’s and 70’s (3.6%). |
T59 | 343-422 | Sentence | denotes | Of the 28 patients, 22 were Korean and 6 were Chinese, of whom 2 were visitors. |
T60 | 423-555 | Sentence | denotes | Of the 16 index cases imported from abroad (57.1%), 6 contributed to the occurrence of secondary infections in 10 patients in Korea. |
T61 | 556-678 | Sentence | denotes | Of those with secondary infection, 7 were first-generation patients (25.0%) and 3 were second-generation patients (10.7%). |
T62 | 679-769 | Sentence | denotes | In the remaining 2 patients (7.2%), the route of transmission remains under investigation. |
T63 | 770-983 | Sentence | denotes | The initial symptoms were fever or feeling hot (9 patients, 32.1%), sore throat (9 patients, 32.1%), cough or sputum production (5 patients, 17.9%), chills (5 patients, 17.9%), and muscle ache (4 patients, 14.3%). |
T64 | 984-1022 | Sentence | denotes | However, 3 patients were asymptomatic. |
T65 | 1023-1103 | Sentence | denotes | In 18 patients, pneumonia was confirmed using imaging once hospitalized (64.3%). |
T66 | 1104-1228 | Sentence | denotes | As of February 14th, 7 out of 28 patients had been discharged, and the average length of hospital stay was 12.7 days (range: |
T67 | 1229-1240 | Sentence | denotes | 8–19 days). |
T68 | 1241-1342 | Sentence | denotes | One patient had visited a marketplace in China, while 2 had visited a medical facility in Wuhan City. |
T69 | 1343-1564 | Sentence | denotes | Of the 28 patients, 10 (35.7%) had at least 1 underlying disease including hypertension, diabetes, asthma, chronic rhinitis, dyslipidemia, and hypothyroidism, and 1 patient had undergone surgery for lung cancer (Table 1). |
T70 | 1565-1680 | Sentence | denotes | “Test count” refers to the number of cases that were reported to KCDC by local health centers and were then tested. |
T71 | 1681-1878 | Sentence | denotes | Prior to February 7th, tests were conducted by KCDC and the Research Institute of Public Health and Environment in the corresponding cities/provinces, the number of reports and test counts matched. |
T72 | 1879-2078 | Sentence | denotes | After February 7th, additional tests were conducted for each individual suspected of having COVID-19 increasing the number of reports, aside from those initially conducted by the local health center. |
T73 | 2079-2229 | Sentence | denotes | The earliest date of symptom onset among the 25 patients with a clear date of onset, was January 10th (for 3 patients, the date of onset was unclear). |
T74 | 2230-2409 | Sentence | denotes | Since then, the number of confirmed index cases imported from abroad continued to increase, and symptoms were first confirmed in patients with secondary infection on January 26th. |
T75 | 2410-2615 | Sentence | denotes | The incubation period was estimated to be 4.1 days based on the date of symptom onset and first exposure (among 9 patients, excluding 1 patient with an unclear date of onset) shown in Figure 1 and Table 2. |
T76 | 2616-2866 | Sentence | denotes | In the 16 index cases imported from abroad, the suspected sites where the infection was first contracted were Wuhan, China (11 cases, 68.3%), Singapore (2 cases, 12.5%), Zhuhai, China (1 case, 6.3%), Thailand (1 case, 6.3%), and Japan (1 case, 6.3%). |
T77 | 2867-3087 | Sentence | denotes | The 10 patients with secondary infection for which the routes of transmission were known were either family members (7 cases, 70.0%) including relatives (2 cases), or acquaintances (3 cases, 30%) of the primary patients. |
T78 | 3088-3248 | Sentence | denotes | The suspected sites of transmission were the home (7 cases, 70.0%), a restaurant (1 case, 10.0%), a church (1 case, 10.0%), and other locations (1 case, 10.0%). |
T79 | 3249-3612 | Sentence | denotes | With regard to the distribution of the 24 cases by region, excluding the 2 Wuhan residents and 2 patients who were evacuated via a charter flight, high incidence rates were reported in Gyeonggi-do (11 patients, 39.3%) and Seoul (9 patients, 32.1%), followed by Gwangju (2 patients, 7.1%), and Jeollabuk-do and Jeollanam-do (1 patient each, 3.6%) shown in Table 2. |
LitCovid-PD-HP
Id | Subject | Object | Predicate | Lexical cue | hp_id |
---|---|---|---|---|---|
T12 | 796-801 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
T13 | 838-849 | Phenotype | denotes | sore throat | http://purl.obolibrary.org/obo/HP_0033050 |
T14 | 871-876 | Phenotype | denotes | cough | http://purl.obolibrary.org/obo/HP_0012735 |
T15 | 919-925 | Phenotype | denotes | chills | http://purl.obolibrary.org/obo/HP_0025143 |
T16 | 951-962 | Phenotype | denotes | muscle ache | http://purl.obolibrary.org/obo/HP_0003326 |
T17 | 1039-1048 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
T18 | 1418-1430 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
T19 | 1442-1448 | Phenotype | denotes | asthma | http://purl.obolibrary.org/obo/HP_0002099 |
T20 | 1450-1466 | Phenotype | denotes | chronic rhinitis | http://purl.obolibrary.org/obo/HP_0002257 |
T21 | 1468-1480 | Phenotype | denotes | dyslipidemia | http://purl.obolibrary.org/obo/HP_0003119 |
T22 | 1486-1500 | Phenotype | denotes | hypothyroidism | http://purl.obolibrary.org/obo/HP_0000821 |
T23 | 1542-1553 | Phenotype | denotes | lung cancer | http://purl.obolibrary.org/obo/HP_0100526 |