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PMC:7045878 / 7214-10826 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
155 59-67 Disease denotes COVID-19 MESH:C000657245
148 45-53 Species denotes patients Tax:9606
149 77-80 Species denotes men Tax:9606
150 101-106 Species denotes women Tax:9606
151 192-200 Species denotes patients Tax:9606
152 231-239 Species denotes patients Tax:9606
153 295-302 Species denotes patient Tax:9606
154 353-361 Species denotes patients Tax:9606
162 537-545 Species denotes patients Tax:9606
163 615-623 Species denotes patients Tax:9606
164 661-669 Species denotes patients Tax:9606
165 698-706 Species denotes patients Tax:9606
166 510-530 Disease denotes secondary infections MESH:D060085
167 570-589 Disease denotes secondary infection MESH:D060085
181 820-828 Species denotes patients Tax:9606
182 853-861 Species denotes patients Tax:9606
183 901-909 Species denotes patients Tax:9606
184 929-937 Species denotes patients Tax:9606
185 966-974 Species denotes patients Tax:9606
186 995-1003 Species denotes patients Tax:9606
187 1029-1037 Species denotes patients Tax:9606
188 1137-1145 Species denotes patients Tax:9606
189 796-801 Disease denotes fever MESH:D005334
190 838-849 Disease denotes sore throat MESH:D010608
191 871-876 Disease denotes cough MESH:D003371
192 951-962 Disease denotes muscle ache MESH:D063806
193 1039-1048 Disease denotes pneumonia MESH:D011014
204 1245-1252 Species denotes patient Tax:9606
205 1353-1361 Species denotes patients Tax:9606
206 1508-1515 Species denotes patient Tax:9606
207 1418-1430 Disease denotes hypertension MESH:D006973
208 1432-1440 Disease denotes diabetes MESH:D003920
209 1442-1448 Disease denotes asthma MESH:D001249
210 1458-1466 Disease denotes rhinitis MESH:D012220
211 1468-1480 Disease denotes dyslipidemia MESH:D050171
212 1486-1500 Disease denotes hypothyroidism MESH:D007037
213 1542-1553 Disease denotes lung cancer MESH:D008175
215 1971-1979 Disease denotes COVID-19 MESH:C000657245
222 2127-2135 Species denotes patients Tax:9606
223 2188-2196 Species denotes patients Tax:9606
224 2359-2367 Species denotes patients Tax:9606
225 2524-2532 Species denotes patients Tax:9606
226 2546-2553 Species denotes patient Tax:9606
227 2373-2392 Disease denotes secondary infection MESH:D060085
232 2874-2882 Species denotes patients Tax:9606
233 3078-3086 Species denotes patients Tax:9606
234 2690-2699 Disease denotes infection MESH:D007239
235 2888-2907 Disease denotes secondary infection MESH:D060085
241 3346-3354 Species denotes patients Tax:9606
242 3450-3458 Species denotes patients Tax:9606
243 3480-3488 Species denotes patients Tax:9606
244 3521-3529 Species denotes patients Tax:9606
245 3575-3582 Species denotes patient Tax:9606

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 843-849 Body_part denotes throat http://purl.org/sig/ont/fma/fma228738
T6 880-886 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T7 951-957 Body_part denotes muscle http://purl.org/sig/ont/fma/fma32558
T8 1542-1546 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T3 843-849 Body_part denotes throat http://purl.obolibrary.org/obo/UBERON_0000341
T4 880-886 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T5 1542-1546 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T41 59-67 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T42 520-533 Disease denotes infections in http://purl.obolibrary.org/obo/MONDO_0005550
T43 580-589 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T44 838-849 Disease denotes sore throat http://purl.obolibrary.org/obo/MONDO_0002258
T45 1039-1048 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T46 1418-1430 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T47 1432-1440 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T48 1442-1448 Disease denotes asthma http://purl.obolibrary.org/obo/MONDO_0004979
T49 1450-1466 Disease denotes chronic rhinitis http://purl.obolibrary.org/obo/MONDO_0004514
T50 1458-1466 Disease denotes rhinitis http://purl.obolibrary.org/obo/MONDO_0003014
T51 1468-1480 Disease denotes dyslipidemia http://purl.obolibrary.org/obo/MONDO_0002525
T52 1486-1500 Disease denotes hypothyroidism http://purl.obolibrary.org/obo/MONDO_0005420
T53 1542-1553 Disease denotes lung cancer http://purl.obolibrary.org/obo/MONDO_0008903
T54 1547-1553 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T55 1971-1979 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T56 2383-2392 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T57 2690-2699 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T58 2898-2907 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T25 121-122 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T26 363-365 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T27 951-957 http://purl.obolibrary.org/obo/UBERON_0001630 denotes muscle
T28 951-957 http://purl.obolibrary.org/obo/UBERON_0005090 denotes muscle
T29 951-957 http://www.ebi.ac.uk/efo/EFO_0000801 denotes muscle
T30 951-957 http://www.ebi.ac.uk/efo/EFO_0001949 denotes muscle
T31 1026-1028 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T32 1265-1266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T33 1309-1310 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 1542-1546 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T35 1542-1546 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T36 1566-1570 http://purl.obolibrary.org/obo/UBERON_0000473 denotes Test
T37 1673-1679 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T38 1704-1709 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T39 1858-1862 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T40 1910-1915 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tests
T41 2141-2142 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 2740-2742 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T43 3156-3157 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T44 3186-3187 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 3378-3379 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T46 3447-3449 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 3388-3394 http://purl.obolibrary.org/obo/GO_0060361 denotes flight

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T54 0-2 Sentence denotes 2.
T55 3-34 Sentence denotes Epidemiological characteristics
T56 35-153 Sentence denotes Of the 28 patients with COVID-19, 15 were men (53.6%) and 13 were women (46.1%), with a mean age of 42.6 years (range:
T57 154-167 Sentence denotes 20–73 years).
T58 168-342 Sentence denotes Regarding age groups, 8 patients were in their 50’s (28.6%), 6 patients each were in their 20’s, 30’s, and 40’s (21.4%), and 1 patient each was in their 60’s and 70’s (3.6%).
T59 343-422 Sentence denotes Of the 28 patients, 22 were Korean and 6 were Chinese, of whom 2 were visitors.
T60 423-555 Sentence denotes Of the 16 index cases imported from abroad (57.1%), 6 contributed to the occurrence of secondary infections in 10 patients in Korea.
T61 556-678 Sentence denotes Of those with secondary infection, 7 were first-generation patients (25.0%) and 3 were second-generation patients (10.7%).
T62 679-769 Sentence denotes In the remaining 2 patients (7.2%), the route of transmission remains under investigation.
T63 770-983 Sentence denotes The initial symptoms were fever or feeling hot (9 patients, 32.1%), sore throat (9 patients, 32.1%), cough or sputum production (5 patients, 17.9%), chills (5 patients, 17.9%), and muscle ache (4 patients, 14.3%).
T64 984-1022 Sentence denotes However, 3 patients were asymptomatic.
T65 1023-1103 Sentence denotes In 18 patients, pneumonia was confirmed using imaging once hospitalized (64.3%).
T66 1104-1228 Sentence denotes As of February 14th, 7 out of 28 patients had been discharged, and the average length of hospital stay was 12.7 days (range:
T67 1229-1240 Sentence denotes 8–19 days).
T68 1241-1342 Sentence denotes One patient had visited a marketplace in China, while 2 had visited a medical facility in Wuhan City.
T69 1343-1564 Sentence denotes Of the 28 patients, 10 (35.7%) had at least 1 underlying disease including hypertension, diabetes, asthma, chronic rhinitis, dyslipidemia, and hypothyroidism, and 1 patient had undergone surgery for lung cancer (Table 1).
T70 1565-1680 Sentence denotes “Test count” refers to the number of cases that were reported to KCDC by local health centers and were then tested.
T71 1681-1878 Sentence denotes Prior to February 7th, tests were conducted by KCDC and the Research Institute of Public Health and Environment in the corresponding cities/provinces, the number of reports and test counts matched.
T72 1879-2078 Sentence denotes After February 7th, additional tests were conducted for each individual suspected of having COVID-19 increasing the number of reports, aside from those initially conducted by the local health center.
T73 2079-2229 Sentence denotes The earliest date of symptom onset among the 25 patients with a clear date of onset, was January 10th (for 3 patients, the date of onset was unclear).
T74 2230-2409 Sentence denotes Since then, the number of confirmed index cases imported from abroad continued to increase, and symptoms were first confirmed in patients with secondary infection on January 26th.
T75 2410-2615 Sentence denotes The incubation period was estimated to be 4.1 days based on the date of symptom onset and first exposure (among 9 patients, excluding 1 patient with an unclear date of onset) shown in Figure 1 and Table 2.
T76 2616-2866 Sentence denotes In the 16 index cases imported from abroad, the suspected sites where the infection was first contracted were Wuhan, China (11 cases, 68.3%), Singapore (2 cases, 12.5%), Zhuhai, China (1 case, 6.3%), Thailand (1 case, 6.3%), and Japan (1 case, 6.3%).
T77 2867-3087 Sentence denotes The 10 patients with secondary infection for which the routes of transmission were known were either family members (7 cases, 70.0%) including relatives (2 cases), or acquaintances (3 cases, 30%) of the primary patients.
T78 3088-3248 Sentence denotes The suspected sites of transmission were the home (7 cases, 70.0%), a restaurant (1 case, 10.0%), a church (1 case, 10.0%), and other locations (1 case, 10.0%).
T79 3249-3612 Sentence denotes With regard to the distribution of the 24 cases by region, excluding the 2 Wuhan residents and 2 patients who were evacuated via a charter flight, high incidence rates were reported in Gyeonggi-do (11 patients, 39.3%) and Seoul (9 patients, 32.1%), followed by Gwangju (2 patients, 7.1%), and Jeollabuk-do and Jeollanam-do (1 patient each, 3.6%) shown in Table 2.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T12 796-801 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T13 838-849 Phenotype denotes sore throat http://purl.obolibrary.org/obo/HP_0033050
T14 871-876 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T15 919-925 Phenotype denotes chills http://purl.obolibrary.org/obo/HP_0025143
T16 951-962 Phenotype denotes muscle ache http://purl.obolibrary.org/obo/HP_0003326
T17 1039-1048 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 1418-1430 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T19 1442-1448 Phenotype denotes asthma http://purl.obolibrary.org/obo/HP_0002099
T20 1450-1466 Phenotype denotes chronic rhinitis http://purl.obolibrary.org/obo/HP_0002257
T21 1468-1480 Phenotype denotes dyslipidemia http://purl.obolibrary.org/obo/HP_0003119
T22 1486-1500 Phenotype denotes hypothyroidism http://purl.obolibrary.org/obo/HP_0000821
T23 1542-1553 Phenotype denotes lung cancer http://purl.obolibrary.org/obo/HP_0100526