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PMC:7045877 / 86-3814 JSONTXT

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LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T65 122-127 NCBITaxon:10239 denotes virus
T64 196-202 GO:0016265 denotes deaths
T63 223-229 NCBITaxon:859912 denotes Corona
T62 248-256 SP_7 denotes COVID-19
T61 635-643 SP_7 denotes COVID-19
T60 824-835 UBERON:0001004 denotes respiratory
T59 846-850 SP_10 denotes SARS
T58 890-894 SP_9 denotes MERS
T57 948-952 SP_10 denotes SARS
T56 1012-1019 GO:0065007 denotes control
T55 1117-1121 SP_9 denotes MERS
T54 1194-1200 GO:0016265 denotes deaths
T53 1221-1225 SP_9 denotes MERS
T52 1538-1542 SP_9 denotes MERS
T51 1761-1765 SP_9 denotes MERS
T50 1990-1998 SP_7 denotes COVID-19
T49 2035-2042 SO:0000704 denotes genetic
T48 2062-2070 SP_7 denotes COVID-19
T47 2071-2076 NCBITaxon:10239 denotes virus
T46 2121-2126 NCBITaxon:10239 denotes virus
T45 2251-2257 SO:0001026 denotes genome
T44 2291-2299 SP_7 denotes COVID-19
T43 2396-2404 SP_7 denotes COVID-19
T42 2857-2865 SP_7 denotes COVID-19
T41 3477-3485 SP_7 denotes COVID-19
T40 3554-3565 NCBITaxon:11118 denotes coronavirus

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2251-2257 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 50-59 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 248-256 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 635-643 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 710-720 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T6 811-844 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 846-850 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 948-952 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 1274-1294 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T10 1285-1294 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1371-1381 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T12 1990-1998 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 2062-2070 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2291-2299 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2396-2404 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 2857-2865 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 3477-3485 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 3576-3594 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 38-40 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T2 122-127 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 171-172 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 230-235 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T5 356-359 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 492-494 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T7 545-547 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T8 962-963 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1135-1136 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1449-1452 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 1558-1561 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 1749-1750 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1759-1760 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1872-1876 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T15 2000-2001 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T16 2071-2076 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 2091-2092 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2121-2126 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 2482-2487 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T20 2482-2487 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T21 2549-2551 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 3074-3085 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectively

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2163-2176 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 2163-2176 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-140 Sentence denotes On the 31st December 2019, there were 41 cases of pneumonia in Wuhan, China, reported to the WHO, where the origin of the virus was unknown.
T4 141-298 Sentence denotes As of the 17th February 2020, a total of 71,432 (1,775 deaths) confirmed cases of Corona Virus Disease 19 (COVID-19) in 26 countries and reported to the WHO.
T5 299-559 Sentence denotes There have been 70,635 reported cases in China, and this has consequently affected countries which Chinese citizens frequently visit including Singapore (77 cases), Japan (59 cases), Thailand (35 cases), the South Korea (30 cases), and Malaysia (22 cases) [1].
T6 560-669 Sentence denotes Monitoring of international travelers in Japan have confirmed 454 cases of COVID-19 in infected patients [1].
T7 670-810 Sentence denotes This outbreak is reminiscent of 2 major infectious diseases which have affected the response by the public health system in the South Korea:
T8 811-896 Sentence denotes Severe acute respiratory syndrome (SARS) and Middle East Respiratory Syndrome (MERS).
T9 897-1116 Sentence denotes Although the South Korea had no confirmed cases of SARS in 2004, a paradigm shift in dealing with national disease control occurred resulting in the launch of Korea Centers for Disease Control and Prevention (KCDC) [2].
T10 1117-1295 Sentence denotes MERS in 2015, had a deep impact in the KCDC, with 186 confirmed cases and 38 deaths, due to exposure to MERS from patients returning from travel abroad, and nosocomial infection.
T11 1296-1443 Sentence denotes Consequently, the KCDC reformed the system for preparing and responding to infectious diseases caused by patients returning from travel abroad [3].
T12 1444-1513 Sentence denotes This has led to the establishment of the Emergency Operations Center.
T13 1514-1745 Sentence denotes In the aftermath of the MERS outbreak, KCDC has strengthened its risk communication and risk assessment strategy by introducing new divisions in the KCDC, and increasing the number of professional epidemiological investigators [3].
T14 1746-1881 Sentence denotes As a result, a MERS case where the patient had traveled abroad, was successfully contained with no further confirmed cases in 2018 [4].
T15 1882-1999 Sentence denotes In the current issue of Osong Public Health and Research Perspectives, 3 studies are presented dealing with COVID-19.
T16 2000-2116 Sentence denotes A study by Kim et al, analyzed the genetic information of the COVID-19 virus isolated from a patient in South Korea.
T17 2117-2262 Sentence denotes The virus was identified by real-time reverse transcriptase (RT) PCR followed by Next Generation Sequencing of the full-length of the genome [5].
T18 2263-2446 Sentence denotes In an interim report by the COVID-19 National Emergency Response Center of the KCDC, epidemiological and clinical characteristics of COVID-19 in 28 cases in South Korea were reported.
T19 2447-2671 Sentence denotes There were 53.9% of cases who were males, with 16 cases in patients who had traveled abroad, of which 11 cases (39.3%) were from Wuhan, China, and 12 of the remaining cases were believed to have been infected in South Korea.
T20 2672-2707 Sentence denotes The incubation period was 4.8 days.
T21 2708-2832 Sentence denotes Most secondary infected cases were from family members outside the family home (66.7%) and within the family home (75%) [6].
T22 2833-3030 Sentence denotes In another study by the COVID-19 National Emergency Response Center of KCDC investigating the epidemiology of the cases, contact tracing which reflect the Korean consumers’ habits was investigated.
T23 3031-3273 Sentence denotes The authors described the methods that can objectively verify case claims (medical facility records, Global Positioning System, credit card transactions, and CCTV) to identify the contacts to complement the interviews regarding the cases [7].
T24 3274-3501 Sentence denotes Although the authors mentioned that the interim epidemiological results could be updated when data was available, the current epidemiological information is valuable in determining reporting criteria of COVID-19 in South Korea.
T25 3502-3728 Sentence denotes For optimizing future responses to new outbreaks of coronavirus and other infectious disease epidemics, effectiveness of the procedure in South Korea should be evaluated with comparison with the procedure from other countries.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 50-59 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
8 50-59 Disease denotes pneumonia MESH:D011014
9 196-202 Disease denotes deaths MESH:D003643
10 223-246 Disease denotes Corona Virus Disease 19 MESH:C000657245
11 248-256 Disease denotes COVID-19 MESH:C000657245
15 656-664 Species denotes patients Tax:9606
16 635-643 Disease denotes COVID-19 MESH:C000657245
17 647-655 Disease denotes infected MESH:D007239
24 710-729 Disease denotes infectious diseases MESH:D003141
25 811-844 Disease denotes Severe acute respiratory syndrome MESH:D045169
26 846-850 Disease denotes SARS MESH:D045169
27 856-888 Disease denotes Middle East Respiratory Syndrome MESH:D018352
28 890-894 Disease denotes MERS MESH:D018352
29 948-952 Disease denotes SARS MESH:D045169
40 1231-1239 Species denotes patients Tax:9606
41 1401-1409 Species denotes patients Tax:9606
42 1781-1788 Species denotes patient Tax:9606
43 1117-1121 Disease denotes MERS MESH:D018352
44 1194-1200 Disease denotes deaths MESH:D003643
45 1221-1225 Disease denotes MERS MESH:D018352
46 1274-1294 Disease denotes nosocomial infection MESH:D003428
47 1371-1390 Disease denotes infectious diseases MESH:D003141
48 1538-1542 Disease denotes MERS MESH:D018352
49 1761-1765 Disease denotes MERS MESH:D018352
53 2062-2076 Species denotes COVID-19 virus Tax:2697049
54 2093-2100 Species denotes patient Tax:9606
55 1990-1998 Disease denotes COVID-19 MESH:C000657245
61 2506-2514 Species denotes patients Tax:9606
62 2291-2299 Disease denotes COVID-19 MESH:C000657245
63 2396-2404 Disease denotes COVID-19 MESH:C000657245
64 2647-2655 Disease denotes infected MESH:D007239
65 2723-2731 Disease denotes infected MESH:D007239
68 2857-2865 Disease denotes COVID-19 MESH:C000657245
69 3477-3485 Disease denotes COVID-19 MESH:C000657245
72 3554-3565 Species denotes coronavirus Tax:11118
73 3576-3594 Disease denotes infectious disease MESH:D003141