> top > docs > PMC:7045877 > annotations

PMC:7045877 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T65 208-213 NCBITaxon:10239 denotes virus
T64 282-288 GO:0016265 denotes deaths
T63 309-315 NCBITaxon:859912 denotes Corona
T62 334-342 SP_7 denotes COVID-19
T61 721-729 SP_7 denotes COVID-19
T60 910-921 UBERON:0001004 denotes respiratory
T59 932-936 SP_10 denotes SARS
T58 976-980 SP_9 denotes MERS
T57 1034-1038 SP_10 denotes SARS
T56 1098-1105 GO:0065007 denotes control
T55 1203-1207 SP_9 denotes MERS
T54 1280-1286 GO:0016265 denotes deaths
T53 1307-1311 SP_9 denotes MERS
T52 1624-1628 SP_9 denotes MERS
T51 1847-1851 SP_9 denotes MERS
T50 2076-2084 SP_7 denotes COVID-19
T49 2121-2128 SO:0000704 denotes genetic
T48 2148-2156 SP_7 denotes COVID-19
T47 2157-2162 NCBITaxon:10239 denotes virus
T46 2207-2212 NCBITaxon:10239 denotes virus
T45 2337-2343 SO:0001026 denotes genome
T44 2377-2385 SP_7 denotes COVID-19
T43 2482-2490 SP_7 denotes COVID-19
T42 2943-2951 SP_7 denotes COVID-19
T41 3563-3571 SP_7 denotes COVID-19
T40 3640-3651 NCBITaxon:11118 denotes coronavirus
T3 48-52 SP_9 denotes MERS
T4 34-42 SP_7 denotes COVID-19

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 2337-2343 Body_part denotes genome http://purl.org/sig/ont/fma/fma84116

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 34-42 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T2 136-145 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T3 334-342 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 721-729 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T5 796-806 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T6 897-930 Disease denotes Severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T7 932-936 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T8 1034-1038 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T9 1360-1380 Disease denotes nosocomial infection http://purl.obolibrary.org/obo/MONDO_0043544
T10 1371-1380 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T11 1457-1467 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T12 2076-2084 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T13 2148-2156 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T14 2377-2385 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T15 2482-2490 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 2943-2951 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T17 3563-3571 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T18 3662-3680 Disease denotes infectious disease http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 124-126 http://purl.obolibrary.org/obo/CLO_0053794 denotes 41
T2 208-213 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T3 257-258 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 316-321 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes Virus
T5 442-445 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T6 578-580 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T7 631-633 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T8 1048-1049 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T9 1221-1222 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 1535-1538 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T11 1644-1647 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T12 1835-1836 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1845-1846 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T14 1958-1962 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T15 2086-2087 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T16 2157-2162 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T17 2177-2178 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 2207-2212 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T19 2568-2573 http://purl.obolibrary.org/obo/UBERON_0003101 denotes males
T20 2568-2573 http://www.ebi.ac.uk/efo/EFO_0000970 denotes males
T21 2635-2637 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T22 3160-3171 http://purl.obolibrary.org/obo/BFO_0000030 denotes objectively

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 2249-2262 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 2249-2262 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-43 Sentence denotes Effectiveness for the Response to COVID-19:
T2 44-84 Sentence denotes The MERS Outbreak Containment Procedures
T3 86-226 Sentence denotes On the 31st December 2019, there were 41 cases of pneumonia in Wuhan, China, reported to the WHO, where the origin of the virus was unknown.
T4 227-384 Sentence denotes As of the 17th February 2020, a total of 71,432 (1,775 deaths) confirmed cases of Corona Virus Disease 19 (COVID-19) in 26 countries and reported to the WHO.
T5 385-645 Sentence denotes There have been 70,635 reported cases in China, and this has consequently affected countries which Chinese citizens frequently visit including Singapore (77 cases), Japan (59 cases), Thailand (35 cases), the South Korea (30 cases), and Malaysia (22 cases) [1].
T6 646-755 Sentence denotes Monitoring of international travelers in Japan have confirmed 454 cases of COVID-19 in infected patients [1].
T7 756-896 Sentence denotes This outbreak is reminiscent of 2 major infectious diseases which have affected the response by the public health system in the South Korea:
T8 897-982 Sentence denotes Severe acute respiratory syndrome (SARS) and Middle East Respiratory Syndrome (MERS).
T9 983-1202 Sentence denotes Although the South Korea had no confirmed cases of SARS in 2004, a paradigm shift in dealing with national disease control occurred resulting in the launch of Korea Centers for Disease Control and Prevention (KCDC) [2].
T10 1203-1381 Sentence denotes MERS in 2015, had a deep impact in the KCDC, with 186 confirmed cases and 38 deaths, due to exposure to MERS from patients returning from travel abroad, and nosocomial infection.
T11 1382-1529 Sentence denotes Consequently, the KCDC reformed the system for preparing and responding to infectious diseases caused by patients returning from travel abroad [3].
T12 1530-1599 Sentence denotes This has led to the establishment of the Emergency Operations Center.
T13 1600-1831 Sentence denotes In the aftermath of the MERS outbreak, KCDC has strengthened its risk communication and risk assessment strategy by introducing new divisions in the KCDC, and increasing the number of professional epidemiological investigators [3].
T14 1832-1967 Sentence denotes As a result, a MERS case where the patient had traveled abroad, was successfully contained with no further confirmed cases in 2018 [4].
T15 1968-2085 Sentence denotes In the current issue of Osong Public Health and Research Perspectives, 3 studies are presented dealing with COVID-19.
T16 2086-2202 Sentence denotes A study by Kim et al, analyzed the genetic information of the COVID-19 virus isolated from a patient in South Korea.
T17 2203-2348 Sentence denotes The virus was identified by real-time reverse transcriptase (RT) PCR followed by Next Generation Sequencing of the full-length of the genome [5].
T18 2349-2532 Sentence denotes In an interim report by the COVID-19 National Emergency Response Center of the KCDC, epidemiological and clinical characteristics of COVID-19 in 28 cases in South Korea were reported.
T19 2533-2757 Sentence denotes There were 53.9% of cases who were males, with 16 cases in patients who had traveled abroad, of which 11 cases (39.3%) were from Wuhan, China, and 12 of the remaining cases were believed to have been infected in South Korea.
T20 2758-2793 Sentence denotes The incubation period was 4.8 days.
T21 2794-2918 Sentence denotes Most secondary infected cases were from family members outside the family home (66.7%) and within the family home (75%) [6].
T22 2919-3116 Sentence denotes In another study by the COVID-19 National Emergency Response Center of KCDC investigating the epidemiology of the cases, contact tracing which reflect the Korean consumers’ habits was investigated.
T23 3117-3359 Sentence denotes The authors described the methods that can objectively verify case claims (medical facility records, Global Positioning System, credit card transactions, and CCTV) to identify the contacts to complement the interviews regarding the cases [7].
T24 3360-3587 Sentence denotes Although the authors mentioned that the interim epidemiological results could be updated when data was available, the current epidemiological information is valuable in determining reporting criteria of COVID-19 in South Korea.
T25 3588-3814 Sentence denotes For optimizing future responses to new outbreaks of coronavirus and other infectious disease epidemics, effectiveness of the procedure in South Korea should be evaluated with comparison with the procedure from other countries.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 136-145 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 34-42 Disease denotes COVID-19 MESH:C000657245
3 48-52 Disease denotes MERS MESH:D018352
8 136-145 Disease denotes pneumonia MESH:D011014
9 282-288 Disease denotes deaths MESH:D003643
10 309-332 Disease denotes Corona Virus Disease 19 MESH:C000657245
11 334-342 Disease denotes COVID-19 MESH:C000657245
15 742-750 Species denotes patients Tax:9606
16 721-729 Disease denotes COVID-19 MESH:C000657245
17 733-741 Disease denotes infected MESH:D007239
24 796-815 Disease denotes infectious diseases MESH:D003141
25 897-930 Disease denotes Severe acute respiratory syndrome MESH:D045169
26 932-936 Disease denotes SARS MESH:D045169
27 942-974 Disease denotes Middle East Respiratory Syndrome MESH:D018352
28 976-980 Disease denotes MERS MESH:D018352
29 1034-1038 Disease denotes SARS MESH:D045169
40 1317-1325 Species denotes patients Tax:9606
41 1487-1495 Species denotes patients Tax:9606
42 1867-1874 Species denotes patient Tax:9606
43 1203-1207 Disease denotes MERS MESH:D018352
44 1280-1286 Disease denotes deaths MESH:D003643
45 1307-1311 Disease denotes MERS MESH:D018352
46 1360-1380 Disease denotes nosocomial infection MESH:D003428
47 1457-1476 Disease denotes infectious diseases MESH:D003141
48 1624-1628 Disease denotes MERS MESH:D018352
49 1847-1851 Disease denotes MERS MESH:D018352
53 2148-2162 Species denotes COVID-19 virus Tax:2697049
54 2179-2186 Species denotes patient Tax:9606
55 2076-2084 Disease denotes COVID-19 MESH:C000657245
61 2592-2600 Species denotes patients Tax:9606
62 2377-2385 Disease denotes COVID-19 MESH:C000657245
63 2482-2490 Disease denotes COVID-19 MESH:C000657245
64 2733-2741 Disease denotes infected MESH:D007239
65 2809-2817 Disease denotes infected MESH:D007239
68 2943-2951 Disease denotes COVID-19 MESH:C000657245
69 3563-3571 Disease denotes COVID-19 MESH:C000657245
72 3640-3651 Species denotes coronavirus Tax:11118
73 3662-3680 Disease denotes infectious disease MESH:D003141