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PMC:7039910 / 22843-26049 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
269 754-762 Species denotes patients Tax:9606
270 877-885 Species denotes patients Tax:9606
271 389-397 Disease denotes zoonotic MESH:D015047
272 653-661 Disease denotes COVID-19 MESH:C000657245
273 1044-1054 Disease denotes infections MESH:D007239
281 1514-1522 Species denotes SARS-CoV Tax:694009
282 1554-1562 Species denotes patients Tax:9606
283 1438-1448 Disease denotes infections MESH:D007239
284 1465-1470 Disease denotes fever MESH:D005334
285 1474-1482 Disease denotes COVID-19 MESH:C000657245
286 1527-1545 Disease denotes MERS-CoV infection MESH:D018352
287 1642-1647 Disease denotes fever MESH:D005334
290 2585-2596 Chemical denotes Huoshenshan
291 2635-2646 Chemical denotes Leishenshan

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T13 1465-1470 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T14 1642-1647 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T85 653-661 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T86 1044-1054 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T87 1438-1448 Disease denotes infections http://purl.obolibrary.org/obo/MONDO_0005550
T88 1474-1482 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T89 1514-1522 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T78 325-327 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T79 443-445 http://purl.obolibrary.org/obo/CLO_0008935 denotes s9
T80 593-595 http://purl.obolibrary.org/obo/CLO_0001022 denotes Li
T81 593-595 http://purl.obolibrary.org/obo/CLO_0007314 denotes Li
T82 922-924 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T83 950-952 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T84 990-992 http://purl.obolibrary.org/obo/CLO_0008935 denotes s9
T85 1061-1063 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T86 1408-1409 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 1624-1631 http://purl.obolibrary.org/obo/CLO_0009985 denotes focused
T88 1894-1895 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 1996-1998 http://purl.obolibrary.org/obo/CLO_0008935 denotes s9
T90 2346-2348 http://purl.obolibrary.org/obo/CLO_0008935 denotes s9
T91 2835-2837 http://purl.obolibrary.org/obo/CLO_0008935 denotes s9

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T15 593-595 Chemical denotes Li http://purl.obolibrary.org/obo/CHEBI_30145

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T154 0-36 Sentence denotes Data collection and parameter values
T155 38-132 Sentence denotes Estimation of the epidemic trend assuming the prevention and control measures are insufficient
T156 133-257 Sentence denotes We first estimated the epidemic trend in Wuhan, China assuming the current prevention and control measures are insufficient.
T157 258-342 Sentence denotes In this process, S was assumed to be the population of Wuhan City (11 million)15,34.
T158 343-457 Sentence denotes The initial assumed number of cases caused by zoonotic exposure was 40 (I) according to Imai et al.’s9 estimation.
T159 458-522 Sentence denotes We proposed E at 20 times of I in accordance with Read et al.13.
T160 523-677 Sentence denotes R was set as 0. σ was set as 1/5.2 according to the latest article by Li et al.15, which calculated the mean incubation period of COVID-19 to be 5.2 days.
T161 678-787 Sentence denotes Chen et al.6 calculated the average hospitalization period of 31 discharged patients to be 12.39 ± 4.77 days.
T162 788-954 Sentence denotes Yang et al.24 calculated the median time from disease onset to diagnosis among confirmed patients to be 5. γ was accordingly set as 1/18 (ceiling of 12.39 ± 5 is 18).
T163 955-1072 Sentence denotes R0 was chosen based on Imai et al.’s9 estimation 2.6 (1.9–3.1) assuming 4000 (1000–9700) infections as of 18 January.
T164 1074-1166 Sentence denotes Estimation of the epidemic trend assuming the prevention and control measures are sufficient
T165 1167-1268 Sentence denotes This section discussed the scenario where the current prevention and control measures are sufficient.
T166 1269-1449 Sentence denotes The set of S, E, I, R, σ, and γ is the same as the first section except that we also explored the model with E at 30 times of I to provide a possible range of number of infections.
T167 1450-1548 Sentence denotes The absence of fever in COVID-19 cases is more frequent than in SARS-CoV and MERS-CoV infection35.
T168 1549-1658 Sentence denotes Such patients may be missed since the current surveillance case definition focused mainly on fever detection.
T169 1659-1729 Sentence denotes Accordingly, the possibility of E at 30 times of I cannot be excluded.
T170 1730-1770 Sentence denotes R0 in this section was chosen by phases.
T171 1771-1949 Sentence denotes The first phase ranges from 1 December 2019 to 23 January 2020 and can be regarded as the early phase of the epidemic when a few prevention and control measures were implemented.
T172 1950-2037 Sentence denotes R0 was set as 3.1 consistent with Imai et al.’s9 estimation of high transmission level.
T173 2038-2254 Sentence denotes On 23 January 2020, airplanes, trains, and other public transportation within the city were restricted and other prevention and control measures such as quarantine and isolation were gradually established in Wuhan20.
T174 2255-2391 Sentence denotes So, the second phase began on 24 January and Rt was set as 2.6 consistent with Imai et al.’s9 estimation of moderate transmission level.
T175 2392-2552 Sentence denotes Second February was the last day of the extended Spring Festival holiday and Chinese authorities mobilized more medical resources to support Wuhan ever since36.
T176 2553-2693 Sentence denotes The newly constructed hospital “Huoshenshan” came into service on this day37 and “Leishenshan,” mobile cabin hospitals several days later38.
T177 2694-2745 Sentence denotes Also, more and more medical teams arrived in Wuhan.
T178 2746-2875 Sentence denotes So the third phase began on 3 February and Rt was set as 1.9 consistent with Imai et al.’s9 estimation of low transmission level.
T179 2876-2952 Sentence denotes All of these measures may need one longest incubation period to take effect.
T180 2953-3206 Sentence denotes So, the last phase began on 16 February and Rt was set as 0.9 and 0.5, respectively, assuming the prevention and control measures are sufficient and effective to depict two different levels of effect of the measures in reducing transmission probability.