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PMC:7039910 / 21106-22741 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
257 557-558 Gene denotes N Gene:43740575
258 572-573 Gene denotes N Gene:43740575
259 202-207 Disease denotes death MESH:D003643
260 251-257 Disease denotes deaths MESH:D003643
261 383-391 Disease denotes infected MESH:D007239
262 648-656 Disease denotes infected MESH:D007239
263 1493-1502 Disease denotes infection MESH:D007239

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 94-99 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T79 404-414 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T80 417-427 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550
T81 1403-1407 Disease denotes SI∕N http://purl.obolibrary.org/obo/MONDO_0024475
T82 1415-1419 Disease denotes SI∕N http://purl.obolibrary.org/obo/MONDO_0024475
T83 1493-1502 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T84 1617-1627 Disease denotes infectious http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T74 37-44 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T75 669-670 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T76 722-723 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T77 1406-1410 http://purl.obolibrary.org/obo/CLO_0008147 denotes N,dE

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T7 1129-1133 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T8 1184-1188 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T9 1271-1276 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T10 1318-1323 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T11 1335-1339 Chemical denotes beta http://purl.obolibrary.org/obo/CHEBI_10545
T12 1361-1366 Chemical denotes gamma http://purl.obolibrary.org/obo/CHEBI_30212
T13 1403-1405 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326
T14 1415-1417 Chemical denotes SI http://purl.obolibrary.org/obo/CHEBI_90326

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T148 0-258 Sentence denotes We assumed no new transmissions from animals, no differences in individual immunity, the time-scale of the epidemic is much faster than characteristic times for demographic processes (natural birth and death), and no differences in natural births and deaths.
T149 259-529 Sentence denotes In this model, individuals are classified into four types: susceptible (S; at risk of contracting the disease), exposed (E; infected but not yet infectious), infectious (I; capable of transmitting the disease), and removed (R; those who recover or die from the disease).
T150 530-590 Sentence denotes The total population size (N) is given by N = S + E + I + R.
T151 591-749 Sentence denotes It is assumed that susceptible individuals who have been infected first enter a latent (exposed) stage, during which they may have a low level of infectivity.
T152 750-1635 Sentence denotes The differential equations of the SEIR model are given as:32,33\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$\begin{array}{l}{\mathrm{d}}S/{\mathrm{d}}t = - {\beta}\,{S}\,{I}/{N},\\ {\mathrm{d}}E/{\mathrm{d}}t = {\beta}\,{S}\,{I}/{N} - {\sigma}\,{E},\\ {\mathrm{d}}I/{\mathrm{d}}t = {\sigma}\,{E} - {\gamma}\,{I},\\ {\mathrm{d}}R/{\mathrm{d}}t = {\gamma}\,{I},\\ {\beta} = {R}_{\mathrm{0}}{\gamma},\end{array}$$\end{document}dS∕dt=−βSI∕N,dE∕dt=βSI∕N−σE,dI∕dt=σE−γI,dR∕dt=γI,β=R0γ,where β is the transmission rate, σ is the infection rate calculated by the inverse of the mean latent period, and γ is the recovery rate calculated by the inverse of infectious period.

2_test

Id Subject Object Predicate Lexical cue
32133152-17254982-19616457 808-810 17254982 denotes 32
32133152-15178190-19616458 811-813 15178190 denotes 33