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PMC:7039716 / 128-3813 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
9 142-164 Species denotes 2019 novel coronavirus Tax:2697049
10 166-175 Species denotes 2019-nCoV Tax:2697049
11 232-240 Disease denotes COVID-19 MESH:C000657245
12 242-251 Disease denotes pneumonia MESH:D011014
13 369-378 Disease denotes infection MESH:D007239
20 652-660 Species denotes patients Tax:9606
21 893-901 Species denotes patients Tax:9606
22 614-633 Disease denotes 2019-nCoV pneumonia MESH:C000657245
23 794-811 Disease denotes pulmonary nodules MESH:D055613
24 813-830 Disease denotes pleural effusions MESH:D010996
25 836-851 Disease denotes lymphadenopathy MESH:D008206
34 1038-1053 Disease denotes viral pneumonia
35 1146-1156 Disease denotes pneumonias MESH:D011014
36 1363-1379 Disease denotes Pleural effusion MESH:D010996
37 1383-1408 Disease denotes necrotic lung abnormality MESH:D008171
38 1442-1475 Disease denotes severe acute respiratory syndrome MESH:D045169
39 1613-1645 Disease denotes middle-east respiratory syndrome MESH:D018352
40 1647-1651 Disease denotes MERS MESH:D018352
41 1663-1684 Disease denotes coronavirus infection MESH:D018352
58 2493-2500 Species denotes patient Tax:9606
59 2855-2863 Species denotes patients Tax:9606
60 1836-1851 Disease denotes viral infection MESH:D001102
61 1890-1899 Disease denotes pneumonia MESH:D011014
62 1969-1978 Disease denotes pneumonia MESH:D011014
63 2090-2108 Disease denotes lung abnormalities MESH:D008171
64 2288-2303 Disease denotes viral pneumonia
65 2395-2411 Disease denotes bronchopneumonia MESH:D001996
66 2424-2433 Disease denotes pneumonia MESH:D011014
67 2648-2657 Disease denotes pneumonia MESH:D011014
68 2743-2753 Disease denotes pneumonias MESH:D011014
69 2770-2779 Disease denotes pneumonia MESH:D011014
70 2810-2835 Disease denotes bronchopneumonia patterns MESH:D001996
71 3019-3023 Disease denotes MERS MESH:D018352
72 3085-3094 Disease denotes mortality MESH:D003643
73 3134-3150 Disease denotes pleural effusion MESH:D010996
80 3641-3648 Species denotes patient Tax:9606
81 3213-3232 Disease denotes 2019-nCoV pneumonia MESH:C000657245
82 3386-3404 Disease denotes lung abnormalities MESH:D008171
83 3478-3496 Disease denotes lung abnormalities MESH:D008171
84 3519-3528 Disease denotes pneumonia MESH:D011014
85 3540-3556 Disease denotes bronchopneumonia MESH:D001996

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T88 507-512 UBERON:0000170 denotes lungs
T87 614-623 SP_7 denotes 2019-nCoV
T86 708-729 UBERON:0004883 denotes pulmonary parenchymal
T85 771-775 UBERON:0002048 denotes lung
T84 794-803 UBERON:0002048 denotes pulmonary
T83 813-830 UBERON:0000175 denotes pleural effusions
T82 1007-1011 UBERON:0002048 denotes lung
T81 1038-1043 NCBITaxon:10239 denotes viral
T80 1073-1079 UBERON:0007023 denotes adults
T79 1175-1180 NCBITaxon:10239 denotes viral
T78 1181-1190 NCBITaxon:1 denotes organisms
T77 1261-1268 UBERON:0009912 denotes lobular
T76 1339-1351 UBERON:0001066 denotes interlobular
T75 1352-1357 UBERON:0003037 denotes septa
T74 1363-1370 UBERON:0000175 denotes Pleural
T73 1371-1379 UBERON:0000115 denotes effusion
T72 1392-1396 UBERON:0002048 denotes lung
T71 1455-1466 UBERON:0001004 denotes respiratory
T70 1487-1493 NCBITaxon:11118 denotes corona
T69 1494-1501 NCBITaxon:10239 denotes viruses
T68 1566-1570 UBERON:3010752 denotes lobe
T67 1586-1590 UBERON:0002048 denotes lung
T66 1625-1636 UBERON:0001004 denotes respiratory
T65 1647-1651 SP_9 denotes MERS
T64 1663-1674 NCBITaxon:11118 denotes coronavirus
T63 1696-1706 UBERON:0003893 denotes subpleural
T62 1717-1721 UBERON:0002048 denotes lung
T61 1836-1841 NCBITaxon:10239 denotes viral
T60 2018-2027 NCBITaxon:1 denotes organisms
T59 2090-2094 UBERON:0002048 denotes lung
T92 153-164 NCBITaxon:11118 denotes coronavirus
T91 166-175 SP_7 denotes 2019-nCoV
T90 232-240 SP_7 denotes COVID-19
T89 471-481 UBERON:0003893 denotes subpleural
T58 2175-2185 CHEBI:33282;CHEBI:33282 denotes antibiotic
T57 2288-2293 NCBITaxon:10239 denotes viral
T56 2447-2455 UBERON:0003215 denotes alveolar
T55 2615-2620 UBERON:0001443 denotes chest
T54 2789-2797 UBERON:0003215 denotes alveolar
T53 2892-2900 UBERON:0003215 denotes alveolar
T52 2992-3001 UBERON:0007221 denotes care unit
T51 3019-3023 SP_9 denotes MERS
T50 3044-3048 UBERON:0002048 denotes lung
T49 3134-3141 UBERON:0000175 denotes pleural
T48 3213-3222 SP_7 denotes 2019-nCoV
T47 3386-3390 UBERON:0002048 denotes lung
T46 3478-3482 UBERON:0002048 denotes lung
T45 3570-3578 UBERON:0003215 denotes alveolar

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 444-467 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T2 507-512 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T3 771-775 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T4 1007-1011 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T5 1392-1396 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T6 1586-1590 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T7 1717-1721 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T8 2090-2094 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T9 2447-2455 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T10 2615-2620 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 2789-2797 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T12 2892-2900 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T13 3044-3048 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 3386-3390 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 3478-3482 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 3570-3578 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 771-775 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T2 813-830 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T3 1007-1011 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 1363-1379 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T5 1392-1396 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 1566-1570 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T7 1586-1590 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 1717-1721 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 2090-2094 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 2615-2620 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T11 3044-3048 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 3134-3150 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T13 3386-3390 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 3478-3482 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 232-240 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 242-251 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 369-378 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 624-633 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 836-851 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T7 1038-1053 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T8 1044-1053 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T9 1146-1156 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T10 1442-1475 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T11 1675-1684 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 1836-1851 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T13 1842-1851 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 1890-1899 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 1969-1978 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 2288-2303 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T17 2294-2303 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 2395-2411 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T19 2413-2433 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T21 2424-2433 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 2636-2645 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T23 2648-2657 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T24 2743-2753 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T25 2759-2779 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T27 2770-2779 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 2810-2826 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T29 3223-3232 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 3508-3528 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T32 3519-3528 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T33 3540-3556 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 216-228 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T2 507-512 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T3 528-529 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 771-775 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T5 771-775 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T6 813-830 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T7 881-882 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1007-1011 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T9 1007-1011 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T10 1181-1190 http://purl.obolibrary.org/obo/OBI_0100026 denotes organisms
T11 1181-1190 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organisms
T12 1259-1260 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1363-1379 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T14 1392-1396 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T15 1392-1396 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T16 1494-1501 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T17 1586-1590 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T18 1586-1590 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T19 1717-1721 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T20 1717-1721 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T21 2018-2027 http://purl.obolibrary.org/obo/OBI_0100026 denotes organisms
T22 2018-2027 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organisms
T23 2090-2094 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T24 2090-2094 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T25 2413-2423 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T26 2615-2620 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T27 2646-2647 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T28 2759-2769 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T29 2929-2930 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3044-3048 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T31 3044-3048 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T32 3134-3150 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T33 3167-3168 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 3386-3390 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T35 3386-3390 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T36 3411-3412 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3478-3482 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T38 3478-3482 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T39 3508-3518 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T40 3604-3605 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 56-59 Chemical denotes Lin http://purl.obolibrary.org/obo/CHEBI_32386
T2 1487-1493 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T3 2175-2185 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T4 3095-3100 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T5 3123-3128 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 242-251 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 624-633 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 813-830 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T5 836-851 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T6 1044-1053 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 1146-1156 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T8 1363-1379 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T9 1890-1899 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 1969-1978 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 2294-2303 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T12 2424-2433 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 2439-2462 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T14 2648-2657 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 2743-2753 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T16 2770-2779 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 2781-2804 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T18 2884-2907 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T19 3134-3150 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T20 3223-3232 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T21 3519-3528 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T22 3562-3585 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1836-1851 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T2 2163-2185 http://purl.obolibrary.org/obo/GO_0046677 denotes response to antibiotic

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T3 0-379 Sentence denotes In this issue of the Korean Journal of Radiology (KJR), Lin et al. (1), while reporting computed tomography (CT) findings of two cases of the 2019 novel coronavirus (2019-nCoV or officially named by the World Health Organization as COVID-19) pneumonia, demonstrated that multiple areas of patchy consolidation and ground-glass opacity (GGO) are main CT findings of the infection.
T4 380-513 Sentence denotes The lesions in their cases were typically distributed along the bronchovascular bundles or subpleural regions in the bilateral lungs.
T5 514-661 Sentence denotes Similarly, in a recent report published in the Radiology, Chung et al. (2) described CT findings of 2019-nCoV pneumonia in 21 symptomatic patients.
T6 662-752 Sentence denotes Representative CT findings included bilateral pulmonary parenchymal GGO and consolidation.
T7 753-864 Sentence denotes Notably, cavitary lung lesions, discrete pulmonary nodules, pleural effusions, and lymphadenopathy were absent.
T8 865-1022 Sentence denotes Follow-up CT in a subset of patients demonstrated mild or moderate disease progression, as manifested by the increasing extent and density of lung opacities.
T9 1023-1101 Sentence denotes CT findings of viral pneumonia in immunocompetent adults have been well known.
T10 1102-1362 Sentence denotes Although the findings overlap among various pneumonias caused by diverse viral organisms, CT features include poorly defined centrilobular nodules, GGO with a lobular distribution, segmental consolidation, and diffuse GGO with thickened interlobular septa (3).
T11 1363-1424 Sentence denotes Pleural effusion or necrotic lung abnormality is rarely seen.
T12 1425-1609 Sentence denotes Particularly, in severe acute respiratory syndrome, for which corona viruses are also being implicated, common CT features are GGO and lower lobe and peripheral lung distributions (4).
T13 1610-1807 Sentence denotes In middle-east respiratory syndrome (MERS) caused by coronavirus infection, bilateral subpleural and lower lung zone-predominant GGO and consolidation were the most commonly observed findings (56).
T14 1808-1900 Sentence denotes The main role of imaging in viral infection lies in the detection or exclusion of pneumonia.
T15 1901-2109 Sentence denotes Other roles include narrowing down of the differential diagnosis of pneumonia with respect to the involved causative organisms in consideration of the patterns, distribution, and extent of lung abnormalities.
T16 2110-2158 Sentence denotes Further diagnostic approaches may be clued into.
T17 2159-2247 Sentence denotes The response to antibiotic therapy may be evaluated using follow-up imaging studies (7).
T18 2248-2472 Sentence denotes Particularly with the pattern approach, viral pneumonia in an immunocompetent cohort can be further divided into three patterns, namely, bilateral bronchopneumonia, organizing pneumonia, and diffuse alveolar damage patterns.
T19 2473-2588 Sentence denotes With this approach, patient management (necessitating ventilation support) and prognostication could be determined.
T20 2589-2711 Sentence denotes Kang et al. (8) evaluated chest CT findings of influenza A pneumonia and correlated the results with the clinical outcome.
T21 2712-3006 Sentence denotes They classified CT findings of pneumonias into organizing pneumonia, diffuse alveolar damage, and bronchopneumonia patterns and concluded that patients presenting with the diffuse alveolar damage pattern tend to show a poor prognosis and need ventilation therapy in the intensive care unit (8).
T22 3007-3188 Sentence denotes In cases of MERS, the mean number of lung segments involved was higher in the mortality group than in the recovered group, and pleural effusion correlated with a poor prognosis (9).
T23 3189-3405 Sentence denotes Although CT findings of 2019-nCoV pneumonia were well described in the current study (1) and in the study by Chung et al. (2), the authors did not depict the detailed distribution or the extent of lung abnormalities.
T24 3406-3595 Sentence denotes With a detailed analysis, authors could have drawn specific patterns of lung abnormalities, including organizing pneumonia, bilateral bronchopneumonia, and diffuse alveolar damage patterns.
T25 3596-3685 Sentence denotes If such a pattern could have been drawn, the patient prognosis could have been predicted.