> top > docs > PMC:7039716 > annotations

PMC:7039716 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2 26-48 Species denotes 2019 Novel Coronavirus Tax:2697049
3 0-9 Disease denotes Pneumonia MESH:D011014
9 270-292 Species denotes 2019 novel coronavirus Tax:2697049
10 294-303 Species denotes 2019-nCoV Tax:2697049
11 360-368 Disease denotes COVID-19 MESH:C000657245
12 370-379 Disease denotes pneumonia MESH:D011014
13 497-506 Disease denotes infection MESH:D007239
20 780-788 Species denotes patients Tax:9606
21 1021-1029 Species denotes patients Tax:9606
22 742-761 Disease denotes 2019-nCoV pneumonia MESH:C000657245
23 922-939 Disease denotes pulmonary nodules MESH:D055613
24 941-958 Disease denotes pleural effusions MESH:D010996
25 964-979 Disease denotes lymphadenopathy MESH:D008206
34 1166-1181 Disease denotes viral pneumonia
35 1274-1284 Disease denotes pneumonias MESH:D011014
36 1491-1507 Disease denotes Pleural effusion MESH:D010996
37 1511-1536 Disease denotes necrotic lung abnormality MESH:D008171
38 1570-1603 Disease denotes severe acute respiratory syndrome MESH:D045169
39 1741-1773 Disease denotes middle-east respiratory syndrome MESH:D018352
40 1775-1779 Disease denotes MERS MESH:D018352
41 1791-1812 Disease denotes coronavirus infection MESH:D018352
58 2621-2628 Species denotes patient Tax:9606
59 2983-2991 Species denotes patients Tax:9606
60 1964-1979 Disease denotes viral infection MESH:D001102
61 2018-2027 Disease denotes pneumonia MESH:D011014
62 2097-2106 Disease denotes pneumonia MESH:D011014
63 2218-2236 Disease denotes lung abnormalities MESH:D008171
64 2416-2431 Disease denotes viral pneumonia
65 2523-2539 Disease denotes bronchopneumonia MESH:D001996
66 2552-2561 Disease denotes pneumonia MESH:D011014
67 2776-2785 Disease denotes pneumonia MESH:D011014
68 2871-2881 Disease denotes pneumonias MESH:D011014
69 2898-2907 Disease denotes pneumonia MESH:D011014
70 2938-2963 Disease denotes bronchopneumonia patterns MESH:D001996
71 3147-3151 Disease denotes MERS MESH:D018352
72 3213-3222 Disease denotes mortality MESH:D003643
73 3262-3278 Disease denotes pleural effusion MESH:D010996
80 3769-3776 Species denotes patient Tax:9606
81 3341-3360 Disease denotes 2019-nCoV pneumonia MESH:C000657245
82 3514-3532 Disease denotes lung abnormalities MESH:D008171
83 3606-3624 Disease denotes lung abnormalities MESH:D008171
84 3647-3656 Disease denotes pneumonia MESH:D011014
85 3668-3684 Disease denotes bronchopneumonia MESH:D001996

LitCovid-PMC-OGER-BB

Id Subject Object Predicate Lexical cue
T88 635-640 UBERON:0000170 denotes lungs
T87 742-751 SP_7 denotes 2019-nCoV
T86 836-857 UBERON:0004883 denotes pulmonary parenchymal
T85 899-903 UBERON:0002048 denotes lung
T84 922-931 UBERON:0002048 denotes pulmonary
T83 941-958 UBERON:0000175 denotes pleural effusions
T82 1135-1139 UBERON:0002048 denotes lung
T81 1166-1171 NCBITaxon:10239 denotes viral
T80 1201-1207 UBERON:0007023 denotes adults
T79 1303-1308 NCBITaxon:10239 denotes viral
T78 1309-1318 NCBITaxon:1 denotes organisms
T77 1389-1396 UBERON:0009912 denotes lobular
T76 1467-1479 UBERON:0001066 denotes interlobular
T75 1480-1485 UBERON:0003037 denotes septa
T74 1491-1498 UBERON:0000175 denotes Pleural
T73 1499-1507 UBERON:0000115 denotes effusion
T72 1520-1524 UBERON:0002048 denotes lung
T71 1583-1594 UBERON:0001004 denotes respiratory
T70 1615-1621 NCBITaxon:11118 denotes corona
T69 1622-1629 NCBITaxon:10239 denotes viruses
T68 1694-1698 UBERON:3010752 denotes lobe
T67 1714-1718 UBERON:0002048 denotes lung
T66 1753-1764 UBERON:0001004 denotes respiratory
T65 1775-1779 SP_9 denotes MERS
T64 1791-1802 NCBITaxon:11118 denotes coronavirus
T63 1824-1834 UBERON:0003893 denotes subpleural
T62 1845-1849 UBERON:0002048 denotes lung
T61 1964-1969 NCBITaxon:10239 denotes viral
T60 2146-2155 NCBITaxon:1 denotes organisms
T59 2218-2222 UBERON:0002048 denotes lung
T3 37-48 NCBITaxon:11118 denotes Coronavirus
T92 281-292 NCBITaxon:11118 denotes coronavirus
T91 294-303 SP_7 denotes 2019-nCoV
T90 360-368 SP_7 denotes COVID-19
T89 599-609 UBERON:0003893 denotes subpleural
T58 2303-2313 CHEBI:33282;CHEBI:33282 denotes antibiotic
T57 2416-2421 NCBITaxon:10239 denotes viral
T56 2575-2583 UBERON:0003215 denotes alveolar
T55 2743-2748 UBERON:0001443 denotes chest
T54 2917-2925 UBERON:0003215 denotes alveolar
T53 3020-3028 UBERON:0003215 denotes alveolar
T52 3120-3129 UBERON:0007221 denotes care unit
T51 3147-3151 SP_9 denotes MERS
T50 3172-3176 UBERON:0002048 denotes lung
T49 3262-3269 UBERON:0000175 denotes pleural
T48 3341-3350 SP_7 denotes 2019-nCoV
T47 3514-3518 UBERON:0002048 denotes lung
T46 3606-3610 UBERON:0002048 denotes lung
T45 3698-3706 UBERON:0003215 denotes alveolar

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T1 572-595 Body_part denotes bronchovascular bundles http://purl.org/sig/ont/fma/fma84474
T2 635-640 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T3 899-903 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T4 1135-1139 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T5 1520-1524 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T6 1714-1718 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T7 1845-1849 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T8 2218-2222 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T9 2575-2583 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T10 2743-2748 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T11 2917-2925 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T12 3020-3028 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783
T13 3172-3176 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T14 3514-3518 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 3606-3610 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T16 3698-3706 Body_part denotes alveolar http://purl.org/sig/ont/fma/fma264783

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 899-903 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T2 941-958 Body_part denotes pleural effusions http://purl.obolibrary.org/obo/UBERON_0000175
T3 1135-1139 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T4 1491-1507 Body_part denotes Pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T5 1520-1524 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 1694-1698 Body_part denotes lobe http://purl.obolibrary.org/obo/UBERON_3010752
T7 1714-1718 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T8 1845-1849 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T9 2218-2222 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T10 2743-2748 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T11 3172-3176 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T12 3262-3278 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T13 3514-3518 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T14 3606-3610 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 0-9 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T2 360-368 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T3 370-379 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T4 497-506 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 752-761 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T6 964-979 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T7 1166-1181 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T8 1172-1181 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T9 1274-1284 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T10 1570-1603 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T11 1803-1812 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T12 1964-1979 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T13 1970-1979 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T14 2018-2027 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T15 2097-2106 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T16 2416-2431 Disease denotes viral pneumonia http://purl.obolibrary.org/obo/MONDO_0006012
T17 2422-2431 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T18 2523-2539 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T19 2541-2561 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T21 2552-2561 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T22 2764-2773 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T23 2776-2785 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T24 2871-2881 Disease denotes pneumonias http://purl.obolibrary.org/obo/MONDO_0005249
T25 2887-2907 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T27 2898-2907 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T28 2938-2954 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T29 3351-3360 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 3636-3656 Disease denotes organizing pneumonia http://purl.obolibrary.org/obo/MONDO_0015265|http://purl.obolibrary.org/obo/MONDO_0056821
T32 3647-3656 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T33 3668-3684 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T1 344-356 http://purl.obolibrary.org/obo/OBI_0000245 denotes Organization
T2 635-640 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T3 656-657 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T4 899-903 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T5 899-903 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T6 941-958 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusions
T7 1009-1010 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T8 1135-1139 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T9 1135-1139 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T10 1309-1318 http://purl.obolibrary.org/obo/OBI_0100026 denotes organisms
T11 1309-1318 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organisms
T12 1387-1388 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 1491-1507 http://purl.obolibrary.org/obo/UBERON_0000175 denotes Pleural effusion
T14 1520-1524 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T15 1520-1524 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T16 1622-1629 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T17 1714-1718 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T18 1714-1718 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T19 1845-1849 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T20 1845-1849 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T21 2146-2155 http://purl.obolibrary.org/obo/OBI_0100026 denotes organisms
T22 2146-2155 http://purl.obolibrary.org/obo/UBERON_0000468 denotes organisms
T23 2218-2222 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T24 2218-2222 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T25 2541-2551 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T26 2743-2748 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T27 2774-2775 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T28 2887-2897 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T29 3057-3058 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T30 3172-3176 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T31 3172-3176 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T32 3262-3278 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T33 3295-3296 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T34 3514-3518 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T35 3514-3518 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T36 3539-3540 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T37 3606-3610 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T38 3606-3610 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T39 3636-3646 http://purl.obolibrary.org/obo/OBI_0000245 denotes organizing
T40 3732-3733 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 3849-3852 http://purl.obolibrary.org/obo/CLO_0051582 denotes has

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 184-187 Chemical denotes Lin http://purl.obolibrary.org/obo/CHEBI_32386
T2 1615-1621 Chemical denotes corona http://purl.obolibrary.org/obo/CHEBI_37409
T3 2303-2313 Chemical denotes antibiotic http://purl.obolibrary.org/obo/CHEBI_33281
T4 3223-3228 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433
T5 3251-3256 Chemical denotes group http://purl.obolibrary.org/obo/CHEBI_24433

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T1 0-9 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T2 370-379 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T3 752-761 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T4 941-958 Phenotype denotes pleural effusions http://purl.obolibrary.org/obo/HP_0002202
T5 964-979 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T6 1172-1181 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 1274-1284 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T8 1491-1507 Phenotype denotes Pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T9 2018-2027 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 2097-2106 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 2422-2431 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T12 2552-2561 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T13 2567-2590 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T14 2776-2785 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T15 2871-2881 Phenotype denotes pneumonias http://purl.obolibrary.org/obo/HP_0002090
T16 2898-2907 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T17 2909-2932 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T18 3012-3035 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006
T19 3262-3278 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T20 3351-3360 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T21 3647-3656 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T22 3690-3713 Phenotype denotes diffuse alveolar damage http://purl.obolibrary.org/obo/HP_0033006

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 1964-1979 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection
T2 2291-2313 http://purl.obolibrary.org/obo/GO_0046677 denotes response to antibiotic

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T1 0-49 Sentence denotes Pneumonia Associated with 2019 Novel Coronavirus:
T2 50-126 Sentence denotes Can Computed Tomographic Findings Help Predict the Prognosis of the Disease?
T3 128-507 Sentence denotes In this issue of the Korean Journal of Radiology (KJR), Lin et al. (1), while reporting computed tomography (CT) findings of two cases of the 2019 novel coronavirus (2019-nCoV or officially named by the World Health Organization as COVID-19) pneumonia, demonstrated that multiple areas of patchy consolidation and ground-glass opacity (GGO) are main CT findings of the infection.
T4 508-641 Sentence denotes The lesions in their cases were typically distributed along the bronchovascular bundles or subpleural regions in the bilateral lungs.
T5 642-789 Sentence denotes Similarly, in a recent report published in the Radiology, Chung et al. (2) described CT findings of 2019-nCoV pneumonia in 21 symptomatic patients.
T6 790-880 Sentence denotes Representative CT findings included bilateral pulmonary parenchymal GGO and consolidation.
T7 881-992 Sentence denotes Notably, cavitary lung lesions, discrete pulmonary nodules, pleural effusions, and lymphadenopathy were absent.
T8 993-1150 Sentence denotes Follow-up CT in a subset of patients demonstrated mild or moderate disease progression, as manifested by the increasing extent and density of lung opacities.
T9 1151-1229 Sentence denotes CT findings of viral pneumonia in immunocompetent adults have been well known.
T10 1230-1490 Sentence denotes Although the findings overlap among various pneumonias caused by diverse viral organisms, CT features include poorly defined centrilobular nodules, GGO with a lobular distribution, segmental consolidation, and diffuse GGO with thickened interlobular septa (3).
T11 1491-1552 Sentence denotes Pleural effusion or necrotic lung abnormality is rarely seen.
T12 1553-1737 Sentence denotes Particularly, in severe acute respiratory syndrome, for which corona viruses are also being implicated, common CT features are GGO and lower lobe and peripheral lung distributions (4).
T13 1738-1935 Sentence denotes In middle-east respiratory syndrome (MERS) caused by coronavirus infection, bilateral subpleural and lower lung zone-predominant GGO and consolidation were the most commonly observed findings (56).
T14 1936-2028 Sentence denotes The main role of imaging in viral infection lies in the detection or exclusion of pneumonia.
T15 2029-2237 Sentence denotes Other roles include narrowing down of the differential diagnosis of pneumonia with respect to the involved causative organisms in consideration of the patterns, distribution, and extent of lung abnormalities.
T16 2238-2286 Sentence denotes Further diagnostic approaches may be clued into.
T17 2287-2375 Sentence denotes The response to antibiotic therapy may be evaluated using follow-up imaging studies (7).
T18 2376-2600 Sentence denotes Particularly with the pattern approach, viral pneumonia in an immunocompetent cohort can be further divided into three patterns, namely, bilateral bronchopneumonia, organizing pneumonia, and diffuse alveolar damage patterns.
T19 2601-2716 Sentence denotes With this approach, patient management (necessitating ventilation support) and prognostication could be determined.
T20 2717-2839 Sentence denotes Kang et al. (8) evaluated chest CT findings of influenza A pneumonia and correlated the results with the clinical outcome.
T21 2840-3134 Sentence denotes They classified CT findings of pneumonias into organizing pneumonia, diffuse alveolar damage, and bronchopneumonia patterns and concluded that patients presenting with the diffuse alveolar damage pattern tend to show a poor prognosis and need ventilation therapy in the intensive care unit (8).
T22 3135-3316 Sentence denotes In cases of MERS, the mean number of lung segments involved was higher in the mortality group than in the recovered group, and pleural effusion correlated with a poor prognosis (9).
T23 3317-3533 Sentence denotes Although CT findings of 2019-nCoV pneumonia were well described in the current study (1) and in the study by Chung et al. (2), the authors did not depict the detailed distribution or the extent of lung abnormalities.
T24 3534-3723 Sentence denotes With a detailed analysis, authors could have drawn specific patterns of lung abnormalities, including organizing pneumonia, bilateral bronchopneumonia, and diffuse alveolar damage patterns.
T25 3724-3813 Sentence denotes If such a pattern could have been drawn, the patient prognosis could have been predicted.
T26 3815-3837 Sentence denotes Conflicts of Interest:
T27 3838-3900 Sentence denotes The author has no potential conflicts of interest to disclose.