> top > docs > PMC:7039714 > spans > 3787-6939 > annotations

PMC:7039714 / 3787-6939 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
181 2433-2441 Disease denotes fibrosis MESH:D005355
117 70-81 Species denotes coronavirus Tax:11118
118 87-96 Species denotes 2019-nCoV Tax:2697049
119 126-137 Species denotes coronavirus Tax:11118
120 159-203 Species denotes Middle East Respiratory Syndrome Coronavirus Tax:1335626
121 208-253 Species denotes Severe Acute Respiratory Syndrome Coronavirus Tax:694009
122 255-263 Species denotes SARS-CoV Tax:694009
123 284-292 Species denotes patients Tax:9606
124 431-459 Species denotes Chinese rufous horseshoe bat Tax:89399
125 461-480 Species denotes Rhinolophus sinicus Tax:89399
126 506-515 Species denotes 2019-nCoV Tax:2697049
127 572-578 Species denotes People Tax:9606
128 648-656 Species denotes patients Tax:9606
129 745-754 Species denotes 2019-nCoV Tax:2697049
130 20-39 Disease denotes 2019-nCoV pneumonia MESH:C000657245
131 377-386 Disease denotes infection MESH:D007239
132 612-631 Disease denotes 2019-nCoV infection MESH:C000657245
133 882-887 Disease denotes fever MESH:D005334
134 937-944 Disease denotes fatigue MESH:D005221
135 946-955 Disease denotes dry cough MESH:D003371
136 961-969 Disease denotes diarrhea MESH:D003967
137 975-1010 Disease denotes acute respiratory distress syndrome MESH:D012128
146 1314-1317 Gene denotes CRP Gene:1401
147 1405-1408 Gene denotes CRP Gene:1401
148 1052-1060 Species denotes patients Tax:9606
149 1207-1215 Species denotes patients Tax:9606
150 1503-1510 Species denotes patient Tax:9606
151 1117-1122 Disease denotes fever MESH:D005334
152 1342-1358 Disease denotes viral infections MESH:D001102
153 1585-1604 Disease denotes 2019-nCoV pneumonia MESH:C000657245
168 1759-1767 Species denotes patients Tax:9606
169 2004-2011 Species denotes patient Tax:9606
170 2095-2103 Species denotes patients Tax:9606
171 2552-2560 Species denotes patients Tax:9606
172 2019-2035 Disease denotes pleural effusion MESH:D010996
173 2039-2054 Disease denotes lymphadenopathy MESH:D008206
174 2063-2067 Disease denotes SARS MESH:D045169
175 2086-2094 Disease denotes infected MESH:D007239
176 2135-2147 Disease denotes lung lesions MESH:D008171
177 2248-2269 Disease denotes mediastinal emphysema MESH:D008478
178 2297-2309 Disease denotes lung lesions MESH:D008171
179 2361-2377 Disease denotes bronchopneumonia MESH:D001996
180 2392-2407 Disease denotes viral infection MESH:D001102
187 2689-2697 Species denotes patients Tax:9606
188 2929-2937 Species denotes patients Tax:9606
189 3066-3083 Species denotes novel coronavirus Tax:2697049
190 2703-2722 Disease denotes 2019-nCoV pneumonia MESH:C000657245
191 2956-2961 Disease denotes fever MESH:D005334

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T25 1227-1236 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T26 1289-1300 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T27 1389-1400 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T28 1863-1868 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T29 2135-2139 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T30 2159-2164 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T31 2237-2242 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T32 2297-2301 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T33 2724-2729 Body_part denotes Chest http://purl.org/sig/ont/fma/fma9576
T34 2919-2924 Body_part denotes lungs http://purl.org/sig/ont/fma/fma68877
T35 3084-3087 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T13 2019-2035 Body_part denotes pleural effusion http://purl.obolibrary.org/obo/UBERON_0000175
T14 2135-2139 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T15 2297-2301 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T16 2626-2631 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542
T17 2724-2729 Body_part denotes Chest http://purl.obolibrary.org/obo/UBERON_0001443

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T19 30-39 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T20 208-241 Disease denotes Severe Acute Respiratory Syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T21 255-263 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T22 377-386 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T23 612-631 Disease denotes 2019-nCoV infection http://purl.obolibrary.org/obo/MONDO_0100096
T24 622-631 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T25 961-969 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T26 975-1010 Disease denotes acute respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0006502
T27 981-1010 Disease denotes respiratory distress syndrome http://purl.obolibrary.org/obo/MONDO_0009971
T28 1342-1358 Disease denotes viral infections http://purl.obolibrary.org/obo/MONDO_0005108
T29 1595-1604 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T30 2039-2054 Disease denotes lymphadenopathy http://purl.obolibrary.org/obo/MONDO_0005833
T31 2063-2067 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T32 2260-2269 Disease denotes emphysema http://purl.obolibrary.org/obo/MONDO_0004849
T33 2361-2377 Disease denotes bronchopneumonia http://purl.obolibrary.org/obo/MONDO_0005682
T34 2392-2407 Disease denotes viral infection http://purl.obolibrary.org/obo/MONDO_0005108
T35 2398-2407 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T36 2713-2722 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T41 54-55 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T42 297-298 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T43 409-416 http://purl.obolibrary.org/obo/NCBITaxon_33208 denotes animals
T44 456-459 http://purl.obolibrary.org/obo/NCBITaxon_9397 denotes bat
T45 813-818 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T46 893-894 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T47 1265-1266 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T48 1515-1516 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T49 1863-1868 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T50 2019-2035 http://purl.obolibrary.org/obo/UBERON_0000175 denotes pleural effusion
T51 2135-2139 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T52 2135-2139 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T53 2159-2164 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T54 2201-2202 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T55 2237-2242 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T56 2297-2301 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T57 2297-2301 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T58 2724-2729 http://www.ebi.ac.uk/efo/EFO_0000965 denotes Chest
T59 2919-2924 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lungs
T60 2943-2944 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 3084-3087 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T3 1342-1358 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infections
T4 2392-2407 http://purl.obolibrary.org/obo/GO_0016032 denotes viral infection

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T33 0-10 Sentence denotes DISCUSSION
T34 11-82 Sentence denotes Cases of 2019-nCoV pneumonia are caused by a novel type of coronavirus.
T35 83-272 Sentence denotes The 2019-nCoV is the seventh member of the coronavirus family that includes Middle East Respiratory Syndrome Coronavirus and Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV) (1234).
T36 273-362 Sentence denotes Most early patients had a history of exposure to the South China Seafood Market in Wuhan.
T37 363-489 Sentence denotes The source of infection is thought to be wild animals, possibly the Chinese rufous horseshoe bat (Rhinolophus sinicus) (5678).
T38 490-571 Sentence denotes Transmission of 2019-nCoV is mainly via droplets but can also be through contact.
T39 572-719 Sentence denotes People are generally susceptible to the 2019-nCoV infection and the elderly patients or those with underlying diseases are more seriously affected.
T40 720-861 Sentence denotes The incubation period of 2019-nCoV is generally 3–7 days but no longer than 14 days, and the virus is infective during the incubation period.
T41 862-913 Sentence denotes The main symptom is fever with a temperature > 38℃.
T42 914-1043 Sentence denotes Other symptoms include fatigue, dry cough, and diarrhea, and acute respiratory distress syndrome can occur in severe cases (910).
T43 1044-1152 Sentence denotes The two patients described here were admitted to our hospital because of fever and relatively mild symptoms.
T44 1153-1244 Sentence denotes According to the laboratory examination results, both patients had normal leukocyte counts.
T45 1245-1359 Sentence denotes However, case 1 had a reduced percentage of lymphocytes and elevated CRP levels, consistent with viral infections.
T46 1360-1511 Sentence denotes In case 2, the percentage of lymphocytes and CRP levels were normal, although this difference may be attributed to the milder symptoms of this patient.
T47 1512-1575 Sentence denotes As a result, this case was prone to misdiagnosis in the clinic.
T48 1576-1753 Sentence denotes However, 2019-nCoV pneumonia was diagnosed in case 2 based on the characteristic CT findings, which were further confirmed using positive results of the timely rRT-PCR analysis.
T49 1754-1995 Sentence denotes Both patients reported here showed multiple areas of patchy consolidation and ground-glass opacities in both lungs, with most of the lesions distributed along the bronchial bundles or in the subpleural areas, particularly in the lower lobes.
T50 1996-2055 Sentence denotes Neither patient showed pleural effusion or lymphadenopathy.
T51 2056-2277 Sentence denotes In the SARS outbreak in 2003, infected patients exhibited rapid progression of lung lesions, with both lungs showing diffuse infiltration within a short period and producing “white lungs” and mediastinal emphysema (1112).
T52 2278-2408 Sentence denotes In contrast, these lung lesions are relatively mild and are easily misdiagnosed as bronchopneumonia or any common viral infection.
T53 2409-2640 Sentence denotes In addition, no obvious fibrosis was found in these cases, which may be related to the short course and mild intensity of the disease in these patients; this speculation remains to be confirmed using subsequent large-scale studies.
T54 2641-2723 Sentence denotes In conclusion, we report the CT findings in two patients with 2019-nCoV pneumonia.
T55 2724-2808 Sentence denotes Chest CT showed multiple regions of patchy consolidation and ground-glass opacities.
T56 2809-2925 Sentence denotes Furthermore, the lesions were typically distributed along the bronchial bundles or subpleural regions in both lungs.
T57 2926-3152 Sentence denotes In patients with a history of fever or contact with the epidemic area combined with the CT findings described here, timely detection of the novel coronavirus DNA is required to ensure early diagnosis, isolation, and treatment.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T17 30-39 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T18 882-887 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T19 937-944 Phenotype denotes fatigue http://purl.obolibrary.org/obo/HP_0012378
T20 946-955 Phenotype denotes dry cough http://purl.obolibrary.org/obo/HP_0031246
T21 961-969 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014
T22 981-1001 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098
T23 1117-1122 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T24 1305-1317 Phenotype denotes elevated CRP http://purl.obolibrary.org/obo/HP_0011227
T25 1595-1604 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T26 2019-2035 Phenotype denotes pleural effusion http://purl.obolibrary.org/obo/HP_0002202
T27 2039-2054 Phenotype denotes lymphadenopathy http://purl.obolibrary.org/obo/HP_0002716
T28 2260-2269 Phenotype denotes emphysema http://purl.obolibrary.org/obo/HP_0002097
T29 2713-2722 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T30 2956-2961 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945

2_test

Id Subject Object Predicate Lexical cue
32056397-26798230-66065283 266-270 26798230 denotes 1234
32056397-31991541-66065284 483-486 31991541 denotes 567
32056397-31986259-66065285 483-487 31986259 denotes 5678
32056397-31953166-66065286 1038-1041 31953166 denotes 910
32056397-14990845-66065287 2271-2273 14990845 denotes 11
32056397-14684509-66065288 2271-2275 14684509 denotes 1112