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PMC:7039714 / 1394-2476 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
51 566-584 Gene denotes C-reactive protein Gene:1401
52 138-144 Species denotes People Tax:9606
53 161-168 Species denotes patient Tax:9606
54 603-610 Species denotes patient Tax:9606
55 678-705 Species denotes respiratory syncytial virus Tax:12814
56 707-717 Species denotes adenovirus Tax:10508
57 719-736 Species denotes influenza A virus Tax:11320
58 738-759 Species denotes Mycoplasma pneumoniae Tax:2104
59 761-781 Species denotes Chlamydia pneumoniae Tax:83558
60 832-849 Species denotes influenza B virus Tax:11520
61 939-948 Species denotes 2019-nCoV Tax:2697049
62 644-655 Species denotes respiratory Tax:12814
63 859-868 Species denotes influenza Tax:11520
64 531-538 Chemical denotes glucose MESH:D005947
65 33-38 Disease denotes fever MESH:D005334
66 54-59 Disease denotes cough MESH:D003371
67 337-342 Disease denotes fever MESH:D005334

LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 531-538 https://glytoucan.org/Structures/Glycans/G15021LG denotes glucose
T2 869-878 https://glytoucan.org/Structures/Glycans/G71832QJ denotes A antigen

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T6 351-355 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T7 433-442 Body_part denotes leukocyte http://purl.org/sig/ont/fma/fma62852
T8 470-481 Body_part denotes neutrophils http://purl.org/sig/ont/fma/fma62860
T9 501-512 Body_part denotes lymphocytes http://purl.org/sig/ont/fma/fma62863
T10 531-538 Body_part denotes glucose http://purl.org/sig/ont/fma/fma82743
T11 577-584 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T12 1057-1060 Body_part denotes DNA http://purl.org/sig/ont/fma/fma74412
T13 1068-1074 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 1068-1074 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 719-728 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T8 738-759 Disease denotes Mycoplasma pneumoniae http://purl.obolibrary.org/obo/MONDO_0005867
T9 761-781 Disease denotes Chlamydia pneumoniae http://purl.obolibrary.org/obo/MONDO_0025598
T10 783-793 Disease denotes Legionella http://purl.obolibrary.org/obo/MONDO_0005824
T11 832-841 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T12 859-868 Disease denotes influenza http://purl.obolibrary.org/obo/MONDO_0005812
T13 917-919 Disease denotes he http://purl.obolibrary.org/obo/MONDO_0017319

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T14 0-1 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T15 2-4 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T16 173-174 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T17 349-350 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T18 424-425 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 611-617 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T20 700-705 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T21 729-730 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T22 731-736 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T23 821-826 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T24 842-843 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T25 844-849 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T26 869-870 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T27 1066-1067 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T1 531-538 Chemical denotes glucose http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167
T3 577-584 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T4 869-878 Chemical denotes A antigen http://purl.obolibrary.org/obo/CHEBI_139352
T5 871-878 Chemical denotes antigen http://purl.obolibrary.org/obo/CHEBI_59132
T6 1057-1060 Chemical denotes DNA http://purl.obolibrary.org/obo/CHEBI_16991

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 980-993 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T2 980-993 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T16 0-156 Sentence denotes A 35-year-old man presented with fever for 3 days and cough for 2 days and was admitted to the emergency department of Jiangxi Provincial People's Hospital.
T17 157-308 Sentence denotes The patient had a history of good physical health with no underlying diseases but had returned to Nanchang, Jiangxi Province, from Wuhan 1 week before.
T18 309-598 Sentence denotes Physical examination showed fever, with a body temperature of 38.7℃, and the laboratory examination results showed a normal leukocyte count (5520/µL), increased neutrophils (76.2%), decreased lymphocytes (16.1%), elevated glucose (7.4 mmol/L), and elevated C-reactive protein (14.00 mg/L).
T19 599-907 Sentence denotes The patient tested negative for eight common respiratory pathogens, which were respiratory syncytial virus, adenovirus, influenza A virus, Mycoplasma pneumoniae, Chlamydia pneumoniae, Legionella pneumophila, parainfluenza virus, and influenza B virus, and the influenza A antigen screening was also negative.
T20 908-1082 Sentence denotes Finally, he was diagnosed with 2019-nCoV based on the real-time reverse-transcriptase-polymerase chain reaction (rRT-PCR) amplification of the viral DNA from a sputum sample.

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 33-38 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T6 54-59 Phenotype denotes cough http://purl.obolibrary.org/obo/HP_0012735
T7 337-342 Phenotype denotes fever http://purl.obolibrary.org/obo/HP_0001945
T8 749-759 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090
T9 771-781 Phenotype denotes pneumoniae http://purl.obolibrary.org/obo/HP_0002090